Wall clock time and date at job start Tue Mar 9 2021 12:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.36447 * 120.29165 * 120.00494 * 4 2 1 6 6 C 1.40090 * 119.25387 * 179.97438 * 5 4 2 7 7 C 1.40852 * 132.86903 * 179.97438 * 6 5 4 8 8 C 1.46566 * 126.57903 * 359.97438 * 7 6 5 9 9 O 1.21719 * 119.99973 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99812 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99763 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.46729 * 35.00135 * 11 10 8 13 13 C 1.52998 * 109.47125 * 154.99721 * 11 10 8 14 14 C 1.52994 * 109.47307 * 180.02562 * 13 11 10 15 15 C 1.53011 * 109.47064 * 300.00257 * 14 13 11 16 16 H 1.08994 * 109.46863 * 299.99619 * 15 14 13 17 17 C 1.53004 * 109.47039 * 179.97438 * 15 14 13 18 18 O 1.42897 * 109.46982 * 175.00018 * 17 15 14 19 19 C 1.52996 * 109.46778 * 59.99916 * 15 14 13 20 20 C 1.52994 * 109.47391 * 299.99883 * 19 15 14 21 21 C 1.40558 * 106.84070 * 180.02562 * 7 6 5 22 22 N 1.30741 * 108.74508 * 359.97438 * 21 7 6 23 23 N 1.36577 * 120.22825 * 359.97438 * 6 5 4 24 24 C 1.36242 * 120.08176 * 359.97438 * 23 6 5 25 25 C 1.35185 * 120.70411 * 359.77045 * 24 23 6 26 26 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 27 27 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 28 28 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 29 29 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 30 30 H 1.08006 * 120.37517 * 359.97438 * 5 4 2 31 31 H 0.97002 * 120.00275 * 0.02562 * 10 8 7 32 32 H 1.08999 * 109.47434 * 300.00290 * 13 11 10 33 33 H 1.09008 * 109.46749 * 60.00138 * 13 11 10 34 34 H 1.08998 * 109.47434 * 59.99808 * 14 13 11 35 35 H 1.09001 * 109.47530 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.46939 * 294.99864 * 17 15 14 37 37 H 1.09000 * 109.47098 * 54.99669 * 17 15 14 38 38 H 0.96694 * 113.99830 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.47437 * 60.00624 * 19 15 14 40 40 H 1.08999 * 109.46943 * 179.97438 * 19 15 14 41 41 H 1.08999 * 109.47415 * 300.00187 * 20 19 15 42 42 H 1.09003 * 109.47412 * 180.02562 * 20 19 15 43 43 H 1.08001 * 125.62628 * 180.02562 * 21 7 6 44 44 H 1.08001 * 119.64550 * 179.97438 * 24 23 6 45 45 H 1.07999 * 119.83925 * 180.24610 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.7161 -1.8203 1.1125 6 6 3.1713 -2.4633 2.2708 7 6 3.9750 -3.6005 2.4826 8 6 4.5745 -4.4509 1.4504 9 8 4.3948 -4.1978 0.2734 10 7 5.3248 -5.5131 1.8044 11 6 5.9245 -6.3628 0.7726 12 1 6.2126 -5.7492 -0.0811 13 6 7.1626 -7.0588 1.3413 14 6 7.7893 -7.9457 0.2636 15 6 6.7734 -8.9982 -0.1851 16 1 6.4854 -9.6120 0.6683 17 6 7.3999 -9.8847 -1.2633 18 8 6.4947 -10.9382 -1.5990 19 6 5.5354 -8.3021 -0.7538 20 6 4.9087 -7.4152 0.3239 21 6 4.0907 -3.7639 3.8739 22 7 3.4186 -2.8117 4.4662 23 7 2.8319 -1.9818 3.5030 24 6 2.0486 -0.8723 3.6107 25 6 1.6022 -0.2327 2.5065 26 1 -0.3934 0.4418 0.7650 27 1 1.7924 -0.5139 -0.8899 28 1 1.5616 2.4678 -1.2086 29 1 1.5878 2.4586 1.2241 30 1 2.9834 -2.1989 0.1369 31 1 5.4677 -5.7150 2.7424 32 1 7.8865 -6.3090 1.6605 33 1 6.8746 -7.6723 2.1950 34 1 8.0774 -7.3319 -0.5899 35 1 8.6712 -8.4419 0.6688 36 1 7.6064 -9.2865 -2.1508 37 1 8.3303 -10.3108 -0.8879 38 1 6.8269 -11.5406 -2.2785 39 1 5.8234 -7.6883 -1.6072 40 1 4.8118 -9.0519 -1.0738 41 1 4.6205 -8.0290 1.1773 42 1 4.0264 -6.9196 -0.0811 43 1 4.6444 -4.5464 4.3715 44 1 1.7842 -0.4978 4.5886 45 1 0.9854 0.6479 2.6080 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_11618758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:33 Heat of formation + Delta-G solvation = -27.645159 kcal Electronic energy + Delta-G solvation = -28188.770530 eV Core-core repulsion = 24173.855401 eV Total energy + Delta-G solvation = -4014.915129 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.32472 -40.91653 -39.57525 -39.21492 -37.39276 -37.31766 -35.13938 -34.23444 -32.13306 -31.79128 -31.60639 -30.00610 -27.39266 -26.17216 -24.92464 -23.90505 -23.58532 -23.06960 -22.00200 -21.34105 -20.72939 -19.10421 -18.63700 -18.17726 -17.97447 -17.56784 -17.04994 -17.00695 -16.48853 -16.24159 -15.89741 -15.79149 -15.59391 -15.47770 -15.09752 -14.92697 -14.68051 -14.54634 -14.20922 -13.93436 -13.82453 -13.50389 -13.47561 -13.24360 -13.13627 -12.92324 -12.48236 -12.22777 -12.13257 -12.08594 -11.90417 -11.61494 -11.55110 -11.39531 -11.24954 -10.91421 -10.88331 -10.78955 -10.33306 -10.03897 -8.80540 -4.89311 -0.57302 -0.15031 1.01498 1.02755 1.20821 1.59628 1.88618 2.07673 2.24148 2.50135 3.07480 3.22391 3.33762 3.36406 3.53374 3.65932 3.70162 3.81862 3.85966 3.93511 4.01636 4.06591 4.18653 4.33773 4.34231 4.37319 4.42446 4.45847 4.53098 4.56161 4.56834 4.64714 4.73871 4.76722 4.87201 4.99684 5.09439 5.12655 5.13042 5.15144 5.17976 5.24280 5.27928 5.41240 5.48731 5.59479 5.64331 6.27705 6.45760 6.64114 6.90801 7.32898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.086 4.086 3 Si 0.770 3.230 4 C -0.051 4.051 5 C -0.116 4.116 6 C 0.152 3.848 7 C -0.340 4.340 8 C 0.598 3.402 9 O -0.590 6.590 10 N -0.712 5.712 11 C 0.151 3.849 12 H 0.068 0.932 13 C -0.117 4.117 14 C -0.106 4.106 15 C -0.087 4.087 16 H 0.074 0.926 17 C 0.075 3.925 18 O -0.597 6.597 19 C -0.103 4.103 20 C -0.123 4.123 21 C 0.131 3.869 22 N -0.340 5.340 23 N -0.274 5.274 24 C 0.117 3.883 25 C -0.157 4.157 26 H 0.390 0.610 27 H 0.122 0.878 28 H -0.294 1.294 29 H -0.253 1.253 30 H 0.150 0.850 31 H 0.412 0.588 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.395 0.605 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.234 0.766 44 H 0.206 0.794 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 1.556 3.548 5.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.193 4.193 3 Si 0.670 3.330 4 C -0.057 4.057 5 C -0.136 4.136 6 C 0.030 3.970 7 C -0.355 4.355 8 C 0.388 3.612 9 O -0.472 6.472 10 N -0.363 5.363 11 C 0.047 3.953 12 H 0.086 0.914 13 C -0.155 4.155 14 C -0.144 4.144 15 C -0.106 4.106 16 H 0.092 0.908 17 C -0.002 4.002 18 O -0.405 6.405 19 C -0.142 4.142 20 C -0.162 4.162 21 C -0.050 4.050 22 N -0.160 5.160 23 N -0.038 5.038 24 C -0.008 4.008 25 C -0.178 4.178 26 H 0.241 0.759 27 H 0.140 0.860 28 H -0.220 1.220 29 H -0.177 1.177 30 H 0.168 0.832 31 H 0.249 0.751 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.244 0.756 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.250 0.750 44 H 0.222 0.778 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 3.290 2.939 3.895 5.885 hybrid contribution -0.653 -1.101 -0.572 1.402 sum 2.637 1.838 3.323 4.623 Atomic orbital electron populations 1.86681 1.17383 1.80638 1.50354 1.25321 0.84023 1.12597 0.97353 0.93412 0.90653 0.70407 0.78535 1.20570 0.94610 0.93885 0.96604 1.20652 0.99896 0.95557 0.97486 1.19550 0.95952 0.94604 0.86849 1.19727 1.17277 1.04222 0.94279 1.17035 0.77428 0.79869 0.86876 1.90751 1.62892 1.73432 1.20150 1.45663 1.51919 1.27812 1.10901 1.20939 0.92977 0.90527 0.90859 0.91406 1.21747 0.95462 0.99240 0.99050 1.21453 0.97804 0.96348 0.98824 1.21189 0.95513 0.95950 0.97904 0.90782 1.22319 0.91856 0.88544 0.97502 1.86433 1.47243 1.43498 1.63343 1.21412 0.97365 0.97836 0.97556 1.21852 0.98026 0.97093 0.99234 1.24604 0.93414 0.95722 0.91209 1.77567 1.19664 1.07290 1.11477 1.46305 1.32500 1.19596 1.05379 1.22195 0.91007 0.84157 1.03468 1.21094 1.04007 1.03152 0.89518 0.75934 0.86031 1.22049 1.17689 0.83214 0.75094 0.89856 0.89796 0.91402 0.89510 0.93207 0.92227 0.75562 0.92477 0.92528 0.91189 0.94066 0.74973 0.77752 0.79228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.13 12.88 -148.98 -1.92 -2.04 16 2 C -0.09 0.17 2.84 71.24 0.20 0.37 16 3 Si 0.77 -3.61 31.95 68.60 2.19 -1.42 16 4 C -0.05 0.04 4.54 -19.82 -0.09 -0.05 16 5 C -0.12 -0.60 9.35 22.30 0.21 -0.39 16 6 C 0.15 1.09 6.76 39.49 0.27 1.36 16 7 C -0.34 -2.22 6.17 -19.90 -0.12 -2.35 16 8 C 0.60 5.00 7.75 86.41 0.67 5.66 16 9 O -0.59 -9.34 15.37 -4.41 -0.07 -9.41 16 10 N -0.71 -0.77 5.07 -446.58 -2.26 -3.04 16 11 C 0.15 0.23 2.45 44.99 0.11 0.34 16 12 H 0.07 0.43 7.58 -2.39 -0.02 0.41 16 13 C -0.12 0.52 5.39 30.59 0.16 0.68 16 14 C -0.11 0.44 5.20 30.60 0.16 0.59 16 15 C -0.09 0.04 2.43 -10.79 -0.03 0.02 16 16 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 17 C 0.08 -0.08 6.43 71.98 0.46 0.38 16 18 O -0.60 -1.29 13.19 -148.98 -1.97 -3.25 16 19 C -0.10 -0.34 5.10 30.59 0.16 -0.19 16 20 C -0.12 -0.47 5.50 30.59 0.17 -0.30 16 21 C 0.13 0.21 11.44 85.42 0.98 1.19 16 22 N -0.34 -1.80 12.57 -56.61 -0.71 -2.51 16 23 N -0.27 -1.21 3.86 -187.28 -0.72 -1.94 16 24 C 0.12 -0.31 11.17 83.30 0.93 0.62 16 25 C -0.16 0.81 8.38 22.03 0.18 0.99 16 26 H 0.39 -3.12 8.10 -74.06 -0.60 -3.72 16 27 H 0.12 -0.16 7.71 -2.39 -0.02 -0.18 16 28 H -0.29 -0.94 7.11 99.48 0.71 -0.23 16 29 H -0.25 1.13 7.03 99.48 0.70 1.83 16 30 H 0.15 1.12 7.01 -2.91 -0.02 1.09 16 31 H 0.41 -2.33 7.52 -92.71 -0.70 -3.03 16 32 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H 0.08 -0.56 8.14 -2.38 -0.02 -0.57 16 34 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 35 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 36 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 38 H 0.39 -2.41 9.12 -74.06 -0.68 -3.08 16 39 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.06 0.37 7.82 -2.39 -0.02 0.35 16 41 H 0.07 0.16 8.14 -2.39 -0.02 0.15 16 42 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.23 -1.88 7.46 -2.91 -0.02 -1.90 16 44 H 0.21 -1.89 8.06 -2.91 -0.02 -1.91 16 45 H 0.19 -2.34 7.25 -2.91 -0.02 -2.36 16 Total: 0.00 -27.01 368.97 -1.94 -28.95 By element: Atomic # 1 Polarization: -13.36 SS G_CDS: -0.90 Total: -14.27 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 4.42 Total: 8.93 kcal Atomic # 7 Polarization: -3.79 SS G_CDS: -3.70 Total: -7.49 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -3.95 Total: -14.71 kcal Atomic # 14 Polarization: -3.61 SS G_CDS: 2.19 Total: -1.42 kcal Total: -27.01 -1.94 -28.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_11618758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.305 kcal (2) G-P(sol) polarization free energy of solvation -27.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds