Wall clock time and date at job start Tue Mar 9 2021 12:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.47060 * 2 1 4 4 C 1.50706 * 109.46735 * 119.99802 * 2 1 3 5 5 C 1.38234 * 120.00196 * 65.00425 * 4 2 1 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00346 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47297 * 89.99469 * 8 7 6 10 10 O 1.21279 * 119.99681 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99940 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99436 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.47504 * 34.99924 * 12 11 9 14 14 C 1.53001 * 109.46897 * 154.99992 * 12 11 9 15 15 C 1.52999 * 109.47084 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47143 * 299.99610 * 15 14 12 17 17 H 1.08992 * 109.47570 * 300.00166 * 16 15 14 18 18 C 1.52999 * 109.47143 * 180.02562 * 16 15 14 19 19 O 1.42899 * 109.47257 * 175.00341 * 18 16 15 20 20 C 1.53001 * 109.46812 * 60.00223 * 16 15 14 21 21 C 1.52996 * 109.46850 * 274.99308 * 12 11 9 22 22 C 1.38243 * 120.00076 * 0.02562 * 7 6 5 23 23 C 1.38235 * 119.99598 * 359.97438 * 22 7 6 24 24 H 0.96698 * 114.00410 * 299.99859 * 1 2 3 25 25 H 1.09000 * 109.47430 * 239.99485 * 2 1 3 26 26 H 1.48501 * 110.00099 * 178.67858 * 3 2 1 27 27 H 1.48503 * 109.99900 * 299.99656 * 3 2 1 28 28 H 1.08000 * 119.99516 * 0.24808 * 5 4 2 29 29 H 1.08000 * 119.99318 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.47144 * 209.99851 * 8 7 6 31 31 H 1.09000 * 109.47061 * 329.99795 * 8 7 6 32 32 H 0.96994 * 120.00335 * 0.02562 * 11 9 8 33 33 H 1.08999 * 109.47030 * 299.99895 * 14 12 11 34 34 H 1.09004 * 109.47362 * 59.99376 * 14 12 11 35 35 H 1.08998 * 109.46923 * 60.00573 * 15 14 12 36 36 H 1.09007 * 109.47120 * 179.97438 * 15 14 12 37 37 H 1.09006 * 109.47461 * 295.00635 * 18 16 15 38 38 H 1.09000 * 109.47189 * 54.99788 * 18 16 15 39 39 H 0.96707 * 113.99684 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.47362 * 59.99964 * 20 16 15 41 41 H 1.08999 * 109.47030 * 179.97438 * 20 16 15 42 42 H 1.08998 * 109.47997 * 300.00714 * 21 12 11 43 43 H 1.09007 * 109.46811 * 60.00589 * 21 12 11 44 44 H 1.07999 * 120.00221 * 179.97438 * 22 7 6 45 45 H 1.08005 * 119.99808 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2306 5 6 1.6847 -2.0602 1.3985 6 6 2.1459 -2.7118 2.5270 7 6 2.8541 -2.0139 3.4873 8 6 3.3573 -2.7244 4.7173 9 6 4.7386 -3.2668 4.4543 10 8 5.2628 -3.0930 3.3746 11 7 5.3912 -3.9450 5.4190 12 6 6.7342 -4.4717 5.1634 13 1 7.2769 -3.7840 4.5150 14 6 7.4837 -4.6220 6.4888 15 6 8.8860 -5.1727 6.2220 16 6 8.7766 -6.5381 5.5404 17 1 8.2337 -7.2255 6.1890 18 6 10.1789 -7.0890 5.2742 19 8 10.0781 -8.4125 4.7448 20 6 8.0270 -6.3878 4.2151 21 6 6.6252 -5.8370 4.4816 22 6 3.1007 -0.6641 3.3194 23 6 2.6395 -0.0124 2.1909 24 1 -0.3934 0.4417 0.7650 25 1 1.7924 -0.5139 -0.8899 26 1 3.5346 1.7703 0.0322 27 1 1.5615 2.4679 -1.2086 28 1 1.1356 -2.6065 0.6459 29 1 1.9529 -3.7663 2.6583 30 1 3.3947 -2.0241 5.5517 31 1 2.6849 -3.5465 4.9627 32 1 4.9717 -4.0843 6.2824 33 1 7.5613 -3.6493 6.9746 34 1 6.9409 -5.3097 7.1373 35 1 9.4290 -4.4852 5.5735 36 1 9.4202 -5.2793 7.1662 37 1 10.6908 -6.4484 4.5561 38 1 10.7430 -7.1126 6.2066 39 1 10.9313 -8.8247 4.5514 40 1 8.5700 -5.7004 3.5664 41 1 7.9494 -7.3605 3.7293 42 1 6.0824 -6.5248 5.1300 43 1 6.0911 -5.7300 3.5374 44 1 3.6536 -0.1187 4.0699 45 1 2.8318 1.0423 2.0599 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:48 Heat of formation + Delta-G solvation = -112.904327 kcal Electronic energy + Delta-G solvation = -24810.166500 eV Core-core repulsion = 21178.858359 eV Total energy + Delta-G solvation = -3631.308141 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.166 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34779 -40.45678 -39.47447 -37.70986 -37.38071 -35.19037 -34.04528 -31.95269 -31.82475 -31.51975 -29.51702 -26.47381 -25.36940 -23.83170 -23.80762 -22.58531 -21.86422 -21.38095 -20.75539 -18.49011 -18.32406 -17.92769 -17.58136 -16.96779 -16.57536 -16.33921 -16.23892 -15.91406 -15.77105 -15.54079 -15.07701 -14.98803 -14.73923 -14.56972 -14.45341 -14.13223 -13.98579 -13.59778 -13.26905 -13.20718 -13.11228 -12.93005 -12.77264 -12.28160 -12.26090 -12.14342 -12.01555 -11.72725 -11.61039 -11.45271 -11.30468 -10.92747 -10.83195 -10.45327 -10.05508 -9.88519 -9.62420 -5.04950 0.23184 0.44293 1.28354 1.61395 1.64971 1.92633 2.16981 2.78356 3.29127 3.49737 3.60194 3.63624 3.75400 3.79118 3.87344 3.91661 4.01248 4.04825 4.09601 4.28555 4.34645 4.34734 4.40125 4.46148 4.47458 4.48034 4.50965 4.59708 4.61665 4.69443 4.71337 4.81915 4.94436 5.00840 5.07114 5.07912 5.09062 5.12436 5.19384 5.35497 5.36999 5.43530 5.52474 5.54238 5.58571 6.01000 6.58430 6.75420 6.86554 7.29646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.076 4.076 3 Si 0.783 3.217 4 C -0.129 4.129 5 C -0.109 4.109 6 C -0.117 4.117 7 C -0.071 4.071 8 C -0.098 4.098 9 C 0.511 3.489 10 O -0.582 6.582 11 N -0.716 5.716 12 C 0.147 3.853 13 H 0.062 0.938 14 C -0.116 4.116 15 C -0.108 4.108 16 C -0.086 4.086 17 H 0.075 0.925 18 C 0.075 3.925 19 O -0.597 6.597 20 C -0.105 4.105 21 C -0.123 4.123 22 C -0.110 4.110 23 C -0.121 4.121 24 H 0.395 0.605 25 H 0.099 0.901 26 H -0.293 1.293 27 H -0.297 1.297 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.418 0.582 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.395 0.605 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.144 0.856 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 0.874 9.606 9.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.186 4.186 3 Si 0.690 3.310 4 C -0.129 4.129 5 C -0.128 4.128 6 C -0.135 4.135 7 C -0.071 4.071 8 C -0.137 4.137 9 C 0.299 3.701 10 O -0.462 6.462 11 N -0.368 5.368 12 C 0.043 3.957 13 H 0.080 0.920 14 C -0.154 4.154 15 C -0.146 4.146 16 C -0.105 4.105 17 H 0.094 0.906 18 C -0.003 4.003 19 O -0.405 6.405 20 C -0.143 4.143 21 C -0.161 4.161 22 C -0.128 4.128 23 C -0.139 4.139 24 H 0.245 0.755 25 H 0.117 0.883 26 H -0.220 1.220 27 H -0.225 1.225 28 H 0.139 0.861 29 H 0.147 0.853 30 H 0.154 0.846 31 H 0.146 0.854 32 H 0.255 0.745 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.245 0.755 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.162 0.838 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.806 1.396 7.964 8.125 hybrid contribution 0.634 -1.060 -0.560 1.356 sum 1.441 0.336 7.404 7.550 Atomic orbital electron populations 1.86459 1.17128 1.82248 1.50478 1.25203 0.85362 1.11038 0.97007 0.93750 0.77483 0.75192 0.84589 1.20406 1.00320 0.95099 0.97109 1.21086 0.99480 0.94299 0.97895 1.21228 0.98192 1.00160 0.93966 1.19589 0.97330 0.94065 0.96125 1.20769 0.92548 1.02823 0.97542 1.21083 0.88174 0.77207 0.83644 1.90743 1.69634 1.59522 1.26258 1.45998 1.17720 1.55944 1.17144 1.20910 0.83050 0.94038 0.97749 0.92021 1.21736 0.95646 1.02832 0.95185 1.21460 0.96904 0.94776 1.01441 1.21179 0.95193 0.97357 0.96760 0.90618 1.22320 0.96969 0.83157 0.97824 1.86433 1.36851 1.30476 1.86728 1.21412 0.95089 1.00439 0.97374 1.21833 0.97354 0.96818 1.00122 1.21255 0.99011 0.94298 0.98204 1.21166 0.98471 1.00045 0.94192 0.75454 0.88348 1.22039 1.22518 0.86126 0.85278 0.84627 0.85413 0.74499 0.89839 0.89689 0.91704 0.89493 0.93401 0.92161 0.75527 0.92878 0.92505 0.90883 0.94133 0.83846 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.68 12.83 -148.98 -1.91 -3.59 16 2 C -0.08 -0.25 2.80 71.24 0.20 -0.05 16 3 Si 0.78 0.54 29.80 68.60 2.04 2.59 16 4 C -0.13 -0.56 5.35 -19.86 -0.11 -0.66 16 5 C -0.11 -0.63 9.69 22.27 0.22 -0.42 16 6 C -0.12 -0.49 9.70 22.27 0.22 -0.28 16 7 C -0.07 -0.14 4.37 -19.87 -0.09 -0.23 16 8 C -0.10 0.43 5.83 29.10 0.17 0.60 16 9 C 0.51 1.17 7.79 87.66 0.68 1.85 16 10 O -0.58 -7.74 15.70 -3.03 -0.05 -7.78 16 11 N -0.72 2.27 5.08 -442.54 -2.25 0.03 16 12 C 0.15 -0.05 2.45 44.99 0.11 0.06 16 13 H 0.06 0.34 7.58 -2.39 -0.02 0.32 16 14 C -0.12 0.67 5.39 30.59 0.16 0.84 16 15 C -0.11 0.50 5.20 30.59 0.16 0.66 16 16 C -0.09 0.09 2.43 -10.79 -0.03 0.06 16 17 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 18 C 0.07 -0.10 6.43 71.98 0.46 0.36 16 19 O -0.60 -1.11 13.20 -148.98 -1.97 -3.07 16 20 C -0.10 -0.29 5.10 30.58 0.16 -0.14 16 21 C -0.12 -0.29 5.49 30.58 0.17 -0.12 16 22 C -0.11 -0.17 9.70 22.27 0.22 0.04 16 23 C -0.12 -0.25 8.67 22.27 0.19 -0.06 16 24 H 0.40 -2.22 8.70 -74.06 -0.64 -2.86 16 25 H 0.10 0.54 7.96 -2.39 -0.02 0.52 16 26 H -0.29 -1.90 7.11 99.48 0.71 -1.19 16 27 H -0.30 -2.25 7.11 99.48 0.71 -1.54 16 28 H 0.12 0.65 8.06 -2.91 -0.02 0.63 16 29 H 0.13 0.19 8.06 -2.91 -0.02 0.17 16 30 H 0.14 -1.42 8.09 -2.39 -0.02 -1.44 16 31 H 0.13 -1.15 8.09 -2.39 -0.02 -1.17 16 32 H 0.42 -4.29 8.60 -92.71 -0.80 -5.09 16 33 H 0.08 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.08 -0.69 8.14 -2.38 -0.02 -0.70 16 35 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 36 H 0.09 -0.62 8.14 -2.38 -0.02 -0.64 16 37 H 0.05 -0.09 8.14 -2.38 -0.02 -0.11 16 38 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.40 -2.50 9.12 -74.05 -0.68 -3.18 16 40 H 0.05 0.23 8.14 -2.38 -0.02 0.22 16 41 H 0.06 0.34 7.82 -2.39 -0.02 0.32 16 42 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.04 0.32 8.14 -2.38 -0.02 0.30 16 44 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 45 H 0.14 -0.36 4.91 -2.91 -0.01 -0.38 16 Total: 0.00 -24.45 363.68 -2.31 -26.76 By element: Atomic # 1 Polarization: -16.38 SS G_CDS: -1.08 Total: -17.46 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 2.89 Total: 2.53 kcal Atomic # 7 Polarization: 2.27 SS G_CDS: -2.25 Total: 0.03 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -3.93 Total: -14.45 kcal Atomic # 14 Polarization: 0.54 SS G_CDS: 2.04 Total: 2.59 kcal Total: -24.45 -2.31 -26.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.143 kcal (2) G-P(sol) polarization free energy of solvation -24.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds