Wall clock time and date at job start Tue Mar 9 2021 12:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.46772 * 2 1 4 4 C 1.50694 * 109.47056 * 119.99617 * 2 1 3 5 5 C 1.38613 * 119.84429 * 75.00416 * 4 2 1 6 6 F 1.35103 * 119.91765 * 359.97438 * 5 4 2 7 7 C 1.38112 * 120.16615 * 180.02562 * 5 4 2 8 8 C 1.39611 * 119.85174 * 359.97438 * 7 5 4 9 9 C 1.47703 * 120.15182 * 179.97438 * 8 7 5 10 10 O 1.21571 * 119.99561 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00226 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99641 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47271 * 35.00685 * 12 11 9 14 14 C 1.53004 * 109.46780 * 155.00101 * 12 11 9 15 15 C 1.52998 * 109.47287 * 180.02562 * 14 12 11 16 16 C 1.53007 * 109.46862 * 299.99959 * 15 14 12 17 17 H 1.09000 * 109.46861 * 299.99954 * 16 15 14 18 18 C 1.52998 * 109.46862 * 179.97438 * 16 15 14 19 19 O 1.42901 * 109.46827 * 174.99950 * 18 16 15 20 20 C 1.52998 * 109.47120 * 59.99627 * 16 15 14 21 21 C 1.52995 * 109.47201 * 274.99666 * 12 11 9 22 22 C 1.39837 * 119.69355 * 0.02562 * 8 7 5 23 23 F 1.35104 * 120.08701 * 179.97438 * 22 8 7 24 24 C 1.38230 * 119.84279 * 255.23499 * 4 2 1 25 25 H 0.96693 * 114.00345 * 300.00211 * 1 2 3 26 26 H 1.08997 * 109.47495 * 239.99679 * 2 1 3 27 27 H 1.48508 * 109.99767 * 299.99691 * 3 2 1 28 28 H 1.48491 * 110.00229 * 61.31748 * 3 2 1 29 29 H 1.08002 * 120.06931 * 180.02562 * 7 5 4 30 30 H 0.96997 * 119.99943 * 359.97438 * 11 9 8 31 31 H 1.09000 * 109.47065 * 300.00129 * 14 12 11 32 32 H 1.09000 * 109.47240 * 59.99697 * 14 12 11 33 33 H 1.09000 * 109.47345 * 59.99617 * 15 14 12 34 34 H 1.09001 * 109.47441 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.47370 * 294.99803 * 18 16 15 36 36 H 1.09006 * 109.47214 * 55.00345 * 18 16 15 37 37 H 0.96698 * 113.99923 * 179.97438 * 19 18 16 38 38 H 1.09006 * 109.46662 * 60.00088 * 20 16 15 39 39 H 1.09000 * 109.47048 * 179.97438 * 20 16 15 40 40 H 1.08992 * 109.47419 * 300.00529 * 21 12 11 41 41 H 1.09000 * 109.47138 * 60.01076 * 21 12 11 42 42 H 1.08002 * 119.92879 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.8679 -2.0931 1.3029 6 9 1.3559 -2.7991 0.2711 7 6 2.3259 -2.7509 2.4277 8 6 2.8542 -2.0199 3.4933 9 6 3.3454 -2.7165 4.6996 10 8 3.8045 -2.0771 5.6261 11 7 3.2846 -4.0609 4.7732 12 6 3.7713 -4.7516 5.9699 13 1 3.5601 -4.1452 6.8506 14 6 3.0664 -6.1033 6.1006 15 6 3.5741 -6.8246 7.3507 16 6 5.0836 -7.0457 7.2342 17 1 5.2950 -7.6524 6.3536 18 6 5.5914 -7.7664 8.4846 19 8 6.9773 -8.0765 8.3258 20 6 5.7885 -5.6941 7.1035 21 6 5.2806 -4.9728 5.8528 22 6 2.9153 -0.6251 3.4138 23 9 3.4245 0.0902 4.4407 24 6 2.4487 0.0205 2.2836 25 1 -0.3933 0.4417 0.7650 26 1 1.7924 -0.5139 -0.8899 27 1 1.5613 2.4679 -1.2086 28 1 1.5878 2.4586 1.2241 29 1 2.2761 -3.8284 2.4823 30 1 2.9180 -4.5709 4.0341 31 1 1.9911 -5.9458 6.1840 32 1 3.2775 -6.7098 5.2198 33 1 3.3627 -6.2180 8.2313 34 1 3.0716 -7.7874 7.4441 35 1 5.4607 -7.1218 9.3538 36 1 5.0269 -8.6879 8.6274 37 1 7.3670 -8.5351 9.0827 38 1 5.5769 -5.0874 7.9841 39 1 6.8639 -5.8516 7.0210 40 1 5.4917 -5.5793 4.9721 41 1 5.7828 -4.0099 5.7598 42 1 2.4913 1.0979 2.2222 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_12360598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:26 Heat of formation + Delta-G solvation = -187.125148 kcal Electronic energy + Delta-G solvation = -28130.293083 eV Core-core repulsion = 23712.396153 eV Total energy + Delta-G solvation = -4417.896929 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.132 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.12283 -50.10426 -41.55793 -40.30404 -39.45118 -37.80385 -37.43895 -35.41873 -33.50898 -31.80256 -31.39555 -31.21913 -27.94931 -26.14268 -24.42807 -23.96951 -23.67475 -22.29869 -21.73264 -20.95145 -19.68867 -18.88333 -18.66616 -18.19665 -17.94222 -17.37846 -17.16956 -16.94880 -16.63017 -16.30978 -16.24003 -15.92709 -15.83661 -15.79459 -15.59336 -15.25513 -15.06072 -14.77730 -14.53136 -14.15959 -13.98819 -13.82844 -13.57262 -13.21198 -13.17691 -13.00543 -12.97286 -12.44374 -12.26166 -12.12872 -11.93599 -11.63376 -11.45723 -11.35521 -11.11683 -10.82816 -10.79041 -10.61150 -10.19466 -9.83653 -4.96380 -0.82663 -0.32349 1.15232 1.37449 1.53516 1.83299 1.90555 2.22716 2.77483 2.83237 3.09421 3.23436 3.30411 3.43375 3.50273 3.61472 3.75285 3.77747 3.94356 3.99936 4.16369 4.28721 4.30520 4.34158 4.37442 4.40733 4.48522 4.51812 4.52913 4.60884 4.67711 4.70494 4.71987 4.82704 4.94458 5.05276 5.08303 5.14239 5.20393 5.32442 5.37303 5.38744 5.48282 6.31110 6.38181 6.89182 6.98762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.087 4.087 3 Si 0.772 3.228 4 C -0.090 4.090 5 C 0.104 3.896 6 F -0.127 7.127 7 C -0.076 4.076 8 C -0.147 4.147 9 C 0.557 3.443 10 O -0.561 6.561 11 N -0.704 5.704 12 C 0.146 3.854 13 H 0.070 0.930 14 C -0.118 4.118 15 C -0.107 4.107 16 C -0.087 4.087 17 H 0.076 0.924 18 C 0.075 3.925 19 O -0.596 6.596 20 C -0.104 4.104 21 C -0.124 4.124 22 C 0.139 3.861 23 F -0.125 7.125 24 C -0.130 4.130 25 H 0.390 0.610 26 H 0.133 0.867 27 H -0.294 1.294 28 H -0.271 1.271 29 H 0.181 0.819 30 H 0.415 0.585 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.395 0.605 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.791 -4.249 -0.878 4.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.195 4.195 3 Si 0.676 3.324 4 C -0.092 4.092 5 C 0.085 3.915 6 F -0.105 7.105 7 C -0.096 4.096 8 C -0.152 4.152 9 C 0.344 3.656 10 O -0.440 6.440 11 N -0.356 5.356 12 C 0.042 3.958 13 H 0.088 0.912 14 C -0.156 4.156 15 C -0.145 4.145 16 C -0.106 4.106 17 H 0.094 0.906 18 C -0.003 4.003 19 O -0.405 6.405 20 C -0.142 4.142 21 C -0.163 4.163 22 C 0.118 3.882 23 F -0.103 7.103 24 C -0.149 4.149 25 H 0.240 0.760 26 H 0.151 0.849 27 H -0.221 1.221 28 H -0.197 1.197 29 H 0.198 0.802 30 H 0.254 0.746 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.245 0.755 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.694 -3.023 -1.319 3.371 hybrid contribution -0.972 -0.436 0.874 1.378 sum -1.666 -3.459 -0.445 3.865 Atomic orbital electron populations 1.86653 1.17462 1.80410 1.50266 1.25302 0.84186 1.12626 0.97381 0.93815 0.90129 0.71127 0.77375 1.20444 0.98867 0.92587 0.97302 1.17340 0.99152 0.89040 0.85986 1.91575 1.84372 1.78171 1.56416 1.21348 0.95910 1.02368 0.89937 1.19836 1.06320 0.92402 0.96600 1.18103 0.78389 0.83096 0.86044 1.90868 1.46617 1.66881 1.39654 1.45866 1.63152 1.05320 1.21245 1.21070 0.93575 0.93872 0.87248 0.91171 1.21765 1.00482 0.93521 0.99829 1.21454 0.93538 1.01594 0.97912 1.21191 0.95338 0.95822 0.98225 0.90583 1.22315 0.81776 0.98717 0.97452 1.86430 1.25106 1.81444 1.47491 1.21428 0.99976 0.95593 0.97244 1.21867 0.95145 1.00054 0.99205 1.17810 0.96238 0.88447 0.85675 1.91604 1.83944 1.77595 1.57170 1.21105 1.00258 1.02368 0.91126 0.76025 0.84937 1.22110 1.19689 0.80191 0.74609 0.89812 0.89498 0.91476 0.89472 0.93293 0.92283 0.75541 0.92552 0.92269 0.90671 0.93680 0.81181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.04 12.88 -148.98 -1.92 -1.88 16 2 C -0.09 0.29 2.44 71.23 0.17 0.46 16 3 Si 0.77 -3.70 30.24 68.60 2.07 -1.63 16 4 C -0.09 0.25 5.27 -19.78 -0.10 0.15 16 5 C 0.10 -0.21 7.23 22.33 0.16 -0.05 16 6 F -0.13 -0.07 16.73 44.97 0.75 0.68 16 7 C -0.08 0.33 9.51 22.57 0.21 0.54 16 8 C -0.15 -0.18 5.88 -20.06 -0.12 -0.29 16 9 C 0.56 2.77 7.73 86.74 0.67 3.44 16 10 O -0.56 -8.01 15.00 -3.94 -0.06 -8.07 16 11 N -0.70 1.39 5.03 -445.55 -2.24 -0.85 16 12 C 0.15 -0.11 2.45 44.99 0.11 0.00 16 13 H 0.07 0.30 7.58 -2.39 -0.02 0.28 16 14 C -0.12 0.74 5.39 30.60 0.16 0.91 16 15 C -0.11 0.58 5.20 30.60 0.16 0.74 16 16 C -0.09 0.17 2.43 -10.79 -0.03 0.15 16 17 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 18 C 0.07 -0.16 6.43 71.98 0.46 0.30 16 19 O -0.60 -0.66 13.19 -148.98 -1.97 -2.62 16 20 C -0.10 -0.16 5.10 30.61 0.16 0.00 16 21 C -0.12 -0.16 5.50 30.61 0.17 0.01 16 22 C 0.14 0.43 7.28 22.67 0.17 0.60 16 23 F -0.12 -1.16 15.55 44.97 0.70 -0.46 16 24 C -0.13 0.27 8.62 22.28 0.19 0.46 16 25 H 0.39 -2.49 8.70 -74.06 -0.64 -3.13 16 26 H 0.13 -0.58 7.89 -2.39 -0.02 -0.60 16 27 H -0.29 -0.84 7.11 99.48 0.71 -0.14 16 28 H -0.27 0.55 6.67 99.48 0.66 1.22 16 29 H 0.18 -1.98 6.40 -2.91 -0.02 -2.00 16 30 H 0.42 -3.70 6.63 -92.71 -0.62 -4.32 16 31 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 32 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 33 H 0.07 -0.31 8.14 -2.39 -0.02 -0.32 16 34 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.06 -0.28 8.14 -2.38 -0.02 -0.30 16 37 H 0.40 -2.75 9.12 -74.06 -0.68 -3.42 16 38 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 39 H 0.06 0.28 7.82 -2.39 -0.02 0.26 16 40 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.04 0.29 8.14 -2.39 -0.02 0.28 16 42 H 0.17 -0.87 4.83 -2.91 -0.01 -0.89 16 Total: 0.00 -21.88 349.27 -0.95 -22.83 By element: Atomic # 1 Polarization: -14.56 SS G_CDS: -0.85 Total: -15.41 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 2.55 Total: 7.41 kcal Atomic # 7 Polarization: 1.39 SS G_CDS: -2.24 Total: -0.85 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -3.94 Total: -12.57 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 1.45 Total: 0.22 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 2.07 Total: -1.63 kcal Total: -21.88 -0.95 -22.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_12360598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.297 kcal (2) G-P(sol) polarization free energy of solvation -21.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds