Wall clock time and date at job start Tue Mar 9 2021 12:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.47406 * 2 1 4 4 C 1.50702 * 109.46954 * 240.00547 * 2 1 3 5 5 C 1.35083 * 126.08095 * 105.17886 * 4 2 1 6 6 N 1.35035 * 107.98169 * 179.87227 * 5 4 2 7 7 C 1.46508 * 125.93181 * 180.11408 * 6 5 4 8 8 C 1.50694 * 109.47105 * 125.30878 * 7 6 5 9 9 O 1.21282 * 120.00066 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99704 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99635 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47243 * 324.99635 * 11 10 8 13 13 C 1.52994 * 109.46949 * 85.00039 * 11 10 8 14 14 C 1.53006 * 109.47144 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46892 * 299.99891 * 14 13 11 16 16 H 1.09005 * 109.47005 * 300.00111 * 15 14 13 17 17 C 1.52994 * 109.47139 * 179.97438 * 15 14 13 18 18 O 1.42904 * 109.47012 * 65.00405 * 17 15 14 19 19 C 1.53005 * 109.47089 * 59.99736 * 15 14 13 20 20 C 1.52994 * 109.47204 * 300.00051 * 19 15 14 21 21 N 1.40075 * 108.13896 * 0.40005 * 6 5 4 22 22 C 1.31616 * 108.10544 * 359.75018 * 21 6 5 23 23 C 1.48418 * 126.03383 * 179.97438 * 22 21 6 24 24 C 1.39332 * 120.11593 * 137.23427 * 23 22 21 25 25 C 1.38028 * 119.87702 * 179.74297 * 24 23 22 26 26 C 1.38321 * 120.11657 * 0.54040 * 25 24 23 27 27 C 1.38320 * 120.24367 * 359.73485 * 26 25 24 28 28 C 1.38016 * 120.12042 * 359.97438 * 27 26 25 29 29 H 0.96703 * 114.00123 * 59.99340 * 1 2 3 30 30 H 1.08991 * 109.47450 * 120.00478 * 2 1 3 31 31 H 1.48499 * 110.00274 * 298.68769 * 3 2 1 32 32 H 1.48505 * 109.99890 * 60.00278 * 3 2 1 33 33 H 1.08002 * 126.00694 * 359.97438 * 5 4 2 34 34 H 1.08996 * 109.46881 * 245.30898 * 7 6 5 35 35 H 1.09008 * 109.46750 * 5.30483 * 7 6 5 36 36 H 0.96993 * 120.00207 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.47198 * 299.99328 * 13 11 10 38 38 H 1.08997 * 109.47478 * 59.99740 * 13 11 10 39 39 H 1.09001 * 109.47499 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.47241 * 59.99478 * 14 13 11 41 41 H 1.09006 * 109.47014 * 184.99581 * 17 15 14 42 42 H 1.08997 * 109.47520 * 305.00058 * 17 15 14 43 43 H 0.96702 * 113.99895 * 180.02562 * 18 17 15 44 44 H 1.09009 * 109.46833 * 180.02562 * 19 15 14 45 45 H 1.08997 * 109.47201 * 60.00317 * 19 15 14 46 46 H 1.09005 * 109.47405 * 299.99940 * 20 19 15 47 47 H 1.09001 * 109.47233 * 179.97438 * 20 19 15 48 48 H 1.08000 * 120.06231 * 0.02562 * 24 23 22 49 49 H 1.08000 * 119.94016 * 180.29859 * 25 24 23 50 50 H 1.08004 * 119.87351 * 179.72107 * 26 25 24 51 51 H 1.07997 * 119.93733 * 180.02562 * 27 26 25 52 52 H 1.08005 * 120.06319 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.4660 -0.1251 -2.3244 6 7 2.7928 -1.0992 -3.2006 7 6 3.4035 -0.9015 -4.5175 8 6 4.6642 -1.7214 -4.6148 9 8 5.0180 -2.4033 -3.6764 10 7 5.3990 -1.6960 -5.7444 11 6 6.6249 -2.4926 -5.8387 12 1 7.1166 -2.5193 -4.8663 13 6 6.2750 -3.9174 -6.2726 14 6 7.5553 -4.7496 -6.3706 15 6 8.4956 -4.1193 -7.3999 16 1 8.0043 -4.0926 -8.3726 17 6 9.7760 -4.9511 -7.4974 18 8 9.4643 -6.2466 -8.0136 19 6 8.8454 -2.6944 -6.9660 20 6 7.5653 -1.8624 -6.8680 21 7 2.4406 -2.3311 -2.6345 22 6 1.9210 -2.1020 -1.4471 23 6 1.4132 -3.1288 -0.5034 24 6 1.7059 -3.0351 0.8556 25 6 1.2267 -3.9898 1.7296 26 6 0.4666 -5.0444 1.2569 27 6 0.1778 -5.1454 -0.0920 28 6 0.6469 -4.1930 -0.9739 29 1 -0.3933 0.4418 -0.7650 30 1 1.7924 -0.5139 0.8898 31 1 1.5879 2.4586 -1.2241 32 1 1.5616 2.4678 1.2086 33 1 2.6086 0.9353 -2.4715 34 1 2.7049 -1.2159 -5.2928 35 1 3.6446 0.1531 -4.6516 36 1 5.1162 -1.1503 -6.4947 37 1 5.6055 -4.3665 -5.5391 38 1 5.7833 -3.8907 -7.2450 39 1 7.3060 -5.7648 -6.6793 40 1 8.0466 -4.7762 -5.3980 41 1 10.4818 -4.4548 -8.1636 42 1 10.2203 -5.0517 -6.5072 43 1 10.2308 -6.8296 -8.1022 44 1 9.5151 -2.2453 -7.6996 45 1 9.3368 -2.7211 -5.9934 46 1 7.0739 -1.8357 -7.8407 47 1 7.8144 -0.8474 -6.5585 48 1 2.3028 -2.2143 1.2251 49 1 1.4489 -3.9155 2.7839 50 1 0.0974 -5.7917 1.9437 51 1 -0.4165 -5.9706 -0.4556 52 1 0.4205 -4.2726 -2.0270 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_12622748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:37 Heat of formation + Delta-G solvation = -19.384030 kcal Electronic energy + Delta-G solvation = -33623.081972 eV Core-core repulsion = 29169.223694 eV Total energy + Delta-G solvation = -4453.858278 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.188 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.50820 -41.10411 -39.86691 -39.50588 -37.83798 -37.45200 -35.27147 -34.78996 -32.43242 -32.10470 -31.81565 -31.55833 -31.14883 -28.68971 -26.38212 -25.77625 -24.17570 -23.80208 -23.46330 -22.35530 -21.71187 -21.54238 -21.11723 -20.74612 -18.86285 -18.46001 -18.09542 -17.71077 -17.55031 -17.00394 -16.66072 -16.34901 -16.24355 -15.97182 -15.77361 -15.64468 -15.59040 -15.45893 -15.13078 -14.98729 -14.58637 -14.37470 -14.34539 -14.21074 -13.99218 -13.80572 -13.74037 -13.55552 -13.25392 -13.15733 -12.98107 -12.57226 -12.36905 -12.29135 -12.16822 -12.14714 -11.89658 -11.64070 -11.60167 -11.46293 -11.34081 -11.16371 -10.85706 -10.65005 -10.32922 -10.12096 -9.89500 -9.79820 -9.32096 -4.84719 0.10058 0.44670 0.79975 1.27676 1.41158 1.49746 1.61769 1.66921 2.02475 2.10000 2.86941 3.27892 3.34648 3.53621 3.55947 3.61644 3.69643 3.75689 3.91937 3.94676 3.97376 4.00278 4.05069 4.11554 4.17260 4.22867 4.28402 4.32923 4.38540 4.43281 4.47193 4.50205 4.51636 4.54767 4.58433 4.69519 4.76531 4.81299 4.86820 4.93651 4.96567 5.05451 5.06960 5.09290 5.12190 5.18866 5.27862 5.34809 5.40894 5.48815 5.54042 5.55361 5.59608 5.90470 6.01877 6.48698 6.57885 6.62716 6.86714 7.19001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.053 4.053 3 Si 0.773 3.227 4 C -0.262 4.262 5 C 0.075 3.925 6 N -0.359 5.359 7 C 0.110 3.890 8 C 0.495 3.505 9 O -0.564 6.564 10 N -0.709 5.709 11 C 0.151 3.849 12 H 0.062 0.938 13 C -0.123 4.123 14 C -0.105 4.105 15 C -0.086 4.086 16 H 0.076 0.924 17 C 0.074 3.926 18 O -0.597 6.597 19 C -0.108 4.108 20 C -0.115 4.115 21 N -0.294 5.294 22 C 0.110 3.890 23 C -0.027 4.027 24 C -0.105 4.105 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.128 4.128 28 C -0.114 4.114 29 H 0.382 0.618 30 H 0.107 0.893 31 H -0.256 1.256 32 H -0.303 1.303 33 H 0.219 0.781 34 H 0.138 0.862 35 H 0.181 0.819 36 H 0.421 0.579 37 H 0.035 0.965 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.395 0.605 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.134 0.866 49 H 0.148 0.852 50 H 0.147 0.853 51 H 0.141 0.859 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.634 6.879 -5.896 10.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.162 4.162 3 Si 0.676 3.324 4 C -0.273 4.273 5 C -0.070 4.070 6 N -0.140 5.140 7 C -0.014 4.014 8 C 0.281 3.719 9 O -0.441 6.441 10 N -0.363 5.363 11 C 0.046 3.954 12 H 0.080 0.920 13 C -0.162 4.162 14 C -0.143 4.143 15 C -0.105 4.105 16 H 0.094 0.906 17 C -0.003 4.003 18 O -0.406 6.406 19 C -0.146 4.146 20 C -0.152 4.152 21 N -0.115 5.115 22 C -0.056 4.056 23 C -0.029 4.029 24 C -0.124 4.124 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.146 4.146 28 C -0.133 4.133 29 H 0.230 0.770 30 H 0.124 0.876 31 H -0.181 1.181 32 H -0.231 1.231 33 H 0.236 0.764 34 H 0.156 0.844 35 H 0.198 0.802 36 H 0.258 0.742 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.245 0.755 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.152 0.848 49 H 0.166 0.834 50 H 0.165 0.835 51 H 0.159 0.841 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.579 6.323 -5.751 9.696 hybrid contribution -0.943 -0.291 -0.145 0.998 sum 3.636 6.032 -5.896 9.185 Atomic orbital electron populations 1.86590 1.18981 1.80493 1.49642 1.24753 0.82949 1.11972 0.96486 0.94200 0.89895 0.70577 0.77777 1.20561 1.14237 0.92296 1.00225 1.22848 0.98285 0.96773 0.89134 1.48133 1.47139 1.03586 1.15168 1.21997 0.92787 1.04753 0.81858 1.21067 0.85694 0.82395 0.82781 1.90825 1.71115 1.42704 1.39417 1.45850 1.25302 1.48428 1.16705 1.20906 0.84817 0.89904 0.99744 0.91958 1.21837 0.97607 0.95579 1.01137 1.21415 0.95326 0.98741 0.98808 1.21187 0.95133 0.94794 0.99352 0.90596 1.22329 0.96688 0.83452 0.97835 1.86436 1.39966 1.26378 1.87773 1.21467 0.97560 0.93053 1.02512 1.21736 0.94922 0.99657 0.98931 1.77719 1.19318 1.04187 1.10309 1.20824 0.98352 0.93670 0.92721 1.17999 0.98918 0.93692 0.92269 1.21340 0.99704 0.99663 0.91731 1.21422 0.97736 0.94263 1.00756 1.21578 0.97846 0.98588 0.95787 1.21355 1.00288 0.99092 0.93827 1.21261 0.97977 0.94242 0.99837 0.76953 0.87565 1.18128 1.23141 0.76427 0.84444 0.80202 0.74151 0.94648 0.90858 0.92706 0.92924 0.92064 0.93413 0.75532 0.89338 0.91666 0.89554 0.89426 0.84821 0.83389 0.83544 0.84123 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.28 12.88 -148.98 -1.92 -5.20 16 2 C -0.05 -0.14 2.50 71.24 0.18 0.03 16 3 Si 0.77 -2.15 30.80 68.60 2.11 -0.03 16 4 C -0.26 -1.31 5.35 -19.95 -0.11 -1.42 16 5 C 0.07 -0.02 9.96 83.47 0.83 0.81 16 6 N -0.36 -1.25 3.40 -351.90 -1.20 -2.44 16 7 C 0.11 -0.65 6.99 85.63 0.60 -0.05 16 8 C 0.50 0.77 7.82 87.66 0.69 1.46 16 9 O -0.56 -8.03 15.37 -3.03 -0.05 -8.08 16 10 N -0.71 3.48 5.08 -442.54 -2.25 1.23 16 11 C 0.15 -0.19 2.45 44.99 0.11 -0.08 16 12 H 0.06 0.30 7.58 -2.39 -0.02 0.28 16 13 C -0.12 -0.32 5.49 30.59 0.17 -0.15 16 14 C -0.10 -0.32 5.10 30.60 0.16 -0.17 16 15 C -0.09 0.12 2.43 -10.79 -0.03 0.09 16 16 H 0.08 -0.03 8.14 -2.38 -0.02 -0.05 16 17 C 0.07 -0.11 6.43 71.98 0.46 0.35 16 18 O -0.60 -1.17 13.20 -148.98 -1.97 -3.14 16 19 C -0.11 0.60 5.20 30.59 0.16 0.76 16 20 C -0.11 0.83 5.39 30.59 0.16 0.99 16 21 N -0.29 -3.84 11.67 -48.16 -0.56 -4.40 16 22 C 0.11 1.29 6.67 42.53 0.28 1.58 16 23 C -0.03 -0.33 5.74 -20.04 -0.12 -0.45 16 24 C -0.11 -0.95 8.89 22.48 0.20 -0.75 16 25 C -0.12 -0.74 10.03 22.24 0.22 -0.52 16 26 C -0.12 -0.66 10.04 22.31 0.22 -0.44 16 27 C -0.13 -0.97 10.03 22.24 0.22 -0.74 16 28 C -0.11 -1.32 9.78 22.48 0.22 -1.10 16 29 H 0.38 -0.18 8.70 -74.06 -0.64 -0.82 16 30 H 0.11 0.36 5.57 -2.39 -0.01 0.34 16 31 H -0.26 0.82 7.00 99.48 0.70 1.51 16 32 H -0.30 -1.63 7.11 99.48 0.71 -0.93 16 33 H 0.22 -2.15 6.33 -2.91 -0.02 -2.17 16 34 H 0.14 -1.37 8.14 -2.39 -0.02 -1.39 16 35 H 0.18 -3.03 8.07 -2.38 -0.02 -3.05 16 36 H 0.42 -5.51 8.60 -92.71 -0.80 -6.31 16 37 H 0.03 0.33 8.14 -2.39 -0.02 0.32 16 38 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.05 0.37 7.82 -2.39 -0.02 0.35 16 40 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.06 -0.28 8.14 -2.38 -0.02 -0.30 16 42 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.40 -2.46 9.12 -74.06 -0.68 -3.13 16 44 H 0.09 -0.72 8.14 -2.38 -0.02 -0.74 16 45 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.09 -0.83 8.14 -2.38 -0.02 -0.85 16 47 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 48 H 0.13 0.78 6.21 -2.91 -0.02 0.76 16 49 H 0.15 0.09 8.06 -2.91 -0.02 0.07 16 50 H 0.15 0.02 8.06 -2.91 -0.02 0.00 16 51 H 0.14 0.43 8.06 -2.91 -0.02 0.40 16 52 H 0.11 1.33 8.06 -2.91 -0.02 1.31 16 Total: 0.00 -34.93 422.59 -2.31 -37.24 By element: Atomic # 1 Polarization: -14.27 SS G_CDS: -1.13 Total: -15.40 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 4.64 Total: 0.21 kcal Atomic # 7 Polarization: -1.61 SS G_CDS: -4.01 Total: -5.61 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -3.93 Total: -16.41 kcal Atomic # 14 Polarization: -2.15 SS G_CDS: 2.11 Total: -0.03 kcal Total: -34.93 -2.31 -37.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_12622748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.860 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds