Wall clock time and date at job start Tue Mar 9 2021 12:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86306 * 109.46799 * 2 1 4 4 C 1.50703 * 109.47200 * 119.99699 * 2 1 3 5 5 C 1.34833 * 125.65105 * 65.32614 * 4 2 1 6 6 C 1.40795 * 107.04981 * 180.13580 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.56997 * 6 5 4 8 8 C 1.47569 * 125.94728 * 180.26566 * 7 6 5 9 9 C 1.39919 * 119.95145 * 359.72585 * 8 7 6 10 10 C 1.36433 * 120.27573 * 179.71740 * 9 8 7 11 11 C 1.39880 * 120.18186 * 0.55763 * 10 9 8 12 12 C 1.47296 * 120.04121 * 179.69704 * 11 10 9 13 13 O 1.21620 * 119.99718 * 180.02562 * 12 11 10 14 14 N 1.34771 * 120.00375 * 0.02562 * 12 11 10 15 15 C 1.46502 * 120.00522 * 180.02562 * 14 12 11 16 16 H 1.09010 * 109.46652 * 325.00341 * 15 14 12 17 17 C 1.52996 * 109.47230 * 85.00005 * 15 14 12 18 18 C 1.52996 * 109.47167 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47040 * 299.99635 * 18 17 15 20 20 H 1.08992 * 109.47677 * 300.00135 * 19 18 17 21 21 C 1.53006 * 109.46939 * 179.97438 * 19 18 17 22 22 O 1.42894 * 109.47046 * 65.00187 * 21 19 18 23 23 C 1.53005 * 109.46879 * 60.00301 * 19 18 17 24 24 C 1.52994 * 109.47331 * 205.00405 * 15 14 12 25 25 C 1.40397 * 119.91115 * 359.72127 * 11 10 9 26 26 O 1.35679 * 120.14056 * 179.97438 * 25 11 10 27 27 C 1.38279 * 119.72393 * 359.97438 * 25 11 10 28 28 O 1.34236 * 125.65151 * 244.97919 * 4 2 1 29 29 H 0.96706 * 114.00179 * 299.99661 * 1 2 3 30 30 H 1.08993 * 109.47236 * 240.00444 * 2 1 3 31 31 H 1.48500 * 110.00116 * 300.00122 * 3 2 1 32 32 H 1.48498 * 110.00076 * 61.31870 * 3 2 1 33 33 H 1.07995 * 126.47650 * 359.97438 * 5 4 2 34 34 H 1.08002 * 126.63743 * 179.83926 * 6 5 4 35 35 H 1.08005 * 119.86467 * 0.02562 * 9 8 7 36 36 H 1.07995 * 119.90845 * 180.27889 * 10 9 8 37 37 H 0.97010 * 119.99953 * 0.02562 * 14 12 11 38 38 H 1.09004 * 109.46935 * 300.00553 * 17 15 14 39 39 H 1.09003 * 109.47135 * 60.00155 * 17 15 14 40 40 H 1.09005 * 109.46934 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.47428 * 60.00285 * 18 17 15 42 42 H 1.08994 * 109.46951 * 185.00413 * 21 19 18 43 43 H 1.09006 * 109.46912 * 305.00182 * 21 19 18 44 44 H 0.96703 * 114.00314 * 179.97438 * 22 21 19 45 45 H 1.08995 * 109.47155 * 179.97438 * 23 19 18 46 46 H 1.09010 * 109.47120 * 59.99560 * 23 19 18 47 47 H 1.08998 * 109.47137 * 300.00024 * 24 15 14 48 48 H 1.09005 * 109.47631 * 59.99714 * 24 15 14 49 49 H 0.96700 * 113.99352 * 270.02073 * 26 25 11 50 50 H 1.08003 * 120.09519 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7621 -2.0192 1.5065 6 6 2.3810 -2.2629 2.7475 7 6 2.9084 -1.0784 3.1616 8 6 3.6580 -0.8542 4.4128 9 6 3.8741 -1.9164 5.2976 10 6 4.5711 -1.7178 6.4535 11 6 5.0648 -0.4472 6.7675 12 6 5.8113 -0.2349 8.0195 13 8 6.2397 0.8702 8.2919 14 7 6.0194 -1.2651 8.8630 15 6 6.7613 -1.0538 10.1085 16 1 7.5451 -0.3145 9.9435 17 6 5.8057 -0.5507 11.1923 18 6 6.5806 -0.3295 12.4928 19 6 7.2112 -1.6493 12.9416 20 1 6.4276 -2.3887 13.1068 21 6 7.9866 -1.4278 14.2418 22 8 7.0769 -1.0699 15.2839 23 6 8.1668 -2.1524 11.8577 24 6 7.3915 -2.3738 10.5570 25 6 4.8475 0.6254 5.8881 26 8 5.3239 1.8598 6.1883 27 6 4.1460 0.4185 4.7146 28 8 2.6271 -0.1462 2.2303 29 1 -0.3934 0.4417 0.7651 30 1 1.7923 -0.5137 -0.8900 31 1 1.5614 2.4680 -1.2085 32 1 1.5878 2.4586 1.2242 33 1 1.2468 -2.7433 0.8930 34 1 2.4316 -3.2078 3.2679 35 1 3.4918 -2.8987 5.0622 36 1 4.7383 -2.5428 7.1300 37 1 5.6779 -2.1467 8.6455 38 1 5.3567 0.3897 10.8727 39 1 5.0218 -1.2900 11.3572 40 1 5.8999 0.0294 13.2648 41 1 7.3642 0.4100 12.3276 42 1 8.5086 -2.3451 14.5142 43 1 8.7112 -0.6258 14.1006 44 1 7.5001 -0.9144 16.1394 45 1 8.6164 -3.0924 12.1776 46 1 8.9505 -1.4129 11.6925 47 1 6.6077 -3.1131 10.7219 48 1 8.0723 -2.7323 9.7849 49 1 4.7071 2.4071 6.6934 50 1 3.9757 1.2392 4.0335 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:47 Heat of formation + Delta-G solvation = -124.333513 kcal Electronic energy + Delta-G solvation = -33221.321708 eV Core-core repulsion = 28567.475155 eV Total energy + Delta-G solvation = -4653.846553 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.74712 -41.68076 -40.38069 -39.21752 -38.21530 -37.89531 -37.38085 -35.28580 -34.25015 -33.51169 -31.79745 -31.54545 -31.15781 -30.26666 -27.23662 -26.07816 -24.41150 -24.06160 -23.77522 -22.62274 -22.18637 -21.77873 -21.32901 -20.87891 -19.75051 -18.84651 -18.59368 -18.14077 -17.73266 -17.56123 -17.43842 -16.66374 -16.51138 -16.38478 -16.07723 -15.93815 -15.80390 -15.74064 -15.39162 -14.98509 -14.82785 -14.52624 -14.44448 -14.33231 -13.98051 -13.94996 -13.80000 -13.63324 -13.59198 -13.42619 -13.16494 -12.97269 -12.95683 -12.71153 -12.27174 -12.20050 -12.12234 -11.89959 -11.57190 -11.43532 -11.28847 -11.13803 -10.88868 -10.85184 -10.80418 -10.63107 -10.09809 -9.96163 -9.02223 -4.99355 -0.79884 0.13605 0.63830 1.11804 1.42791 1.44347 1.68537 1.87060 1.92737 2.04554 2.63577 3.00946 3.20679 3.30854 3.35647 3.59292 3.59945 3.67935 3.79057 3.86377 3.95607 3.98898 4.00920 4.02388 4.22092 4.30367 4.34921 4.36738 4.42031 4.42990 4.49896 4.53046 4.60055 4.63969 4.69579 4.71980 4.78936 4.84170 4.88900 4.96237 5.04677 5.07124 5.09482 5.11795 5.15140 5.20567 5.22252 5.37672 5.42808 5.43275 5.50322 5.53856 5.95503 6.30795 6.49114 6.67298 6.88914 7.18098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.032 4.032 3 Si 0.760 3.240 4 C -0.052 4.052 5 C -0.181 4.181 6 C -0.172 4.172 7 C 0.005 3.995 8 C 0.025 3.975 9 C -0.109 4.109 10 C -0.051 4.051 11 C -0.179 4.179 12 C 0.555 3.445 13 O -0.564 6.564 14 N -0.709 5.709 15 C 0.148 3.852 16 H 0.065 0.935 17 C -0.122 4.122 18 C -0.104 4.104 19 C -0.087 4.087 20 H 0.076 0.924 21 C 0.075 3.925 22 O -0.596 6.596 23 C -0.107 4.107 24 C -0.117 4.117 25 C 0.159 3.841 26 O -0.495 6.495 27 C -0.153 4.153 28 O -0.177 6.177 29 H 0.390 0.610 30 H 0.157 0.843 31 H -0.280 1.280 32 H -0.296 1.296 33 H 0.167 0.833 34 H 0.183 0.817 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.414 0.586 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.395 0.605 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.407 0.593 50 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 -8.002 1.255 8.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.142 4.142 3 Si 0.664 3.336 4 C -0.102 4.102 5 C -0.200 4.200 6 C -0.190 4.190 7 C -0.044 4.044 8 C 0.024 3.976 9 C -0.127 4.127 10 C -0.069 4.069 11 C -0.183 4.183 12 C 0.343 3.657 13 O -0.444 6.444 14 N -0.362 5.362 15 C 0.043 3.957 16 H 0.083 0.917 17 C -0.161 4.161 18 C -0.142 4.142 19 C -0.105 4.105 20 H 0.095 0.905 21 C -0.002 4.002 22 O -0.405 6.405 23 C -0.145 4.145 24 C -0.155 4.155 25 C 0.113 3.887 26 O -0.308 6.308 27 C -0.172 4.172 28 O -0.075 6.075 29 H 0.239 0.761 30 H 0.175 0.825 31 H -0.206 1.206 32 H -0.222 1.222 33 H 0.185 0.815 34 H 0.200 0.800 35 H 0.188 0.812 36 H 0.190 0.810 37 H 0.253 0.747 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.244 0.756 45 H 0.106 0.894 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.101 0.899 49 H 0.267 0.733 50 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.221 -6.634 0.153 6.748 hybrid contribution -1.287 0.325 1.140 1.750 sum -0.066 -6.310 1.294 6.441 Atomic orbital electron populations 1.86640 1.17196 1.80368 1.50034 1.24445 0.83547 1.11895 0.94283 0.93626 0.90642 0.72246 0.77038 1.23164 1.00637 0.94220 0.92155 1.21841 1.04060 0.95687 0.98389 1.22251 1.00835 0.98909 0.97034 1.20578 1.04613 0.87995 0.91258 1.17954 0.95443 0.93873 0.90285 1.21061 0.99280 0.99356 0.92984 1.21178 0.93726 0.95134 0.96887 1.20551 1.05536 0.96163 0.96061 1.18259 0.79397 0.84496 0.83517 1.90818 1.51641 1.25437 1.76468 1.45878 1.57073 1.12327 1.20919 1.20990 0.93422 0.98800 0.82466 0.91717 1.21846 0.98554 1.00896 0.94815 1.21415 0.99386 0.97386 0.96038 1.21189 0.98424 0.97441 0.93487 0.90529 1.22316 0.91276 0.99271 0.87384 1.86429 1.38764 1.92440 1.22841 1.21464 0.97408 1.02395 0.93251 1.21760 1.00630 0.95291 0.97837 1.18501 0.92304 0.85742 0.92187 1.84729 1.45692 1.23636 1.76747 1.21564 0.99496 0.98152 0.97944 1.83939 1.57955 1.38632 1.26952 0.76052 0.82526 1.20649 1.22245 0.81495 0.80013 0.81209 0.81014 0.74745 0.93844 0.90759 0.92353 0.92710 0.92222 0.93367 0.75550 0.89437 0.91645 0.89444 0.89936 0.73302 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.37 12.88 -148.98 -1.92 -2.29 16 2 C -0.03 0.05 2.98 71.24 0.21 0.26 16 3 Si 0.76 -0.34 32.11 68.60 2.20 1.86 16 4 C -0.05 -0.04 6.21 24.90 0.15 0.11 16 5 C -0.18 0.09 10.78 22.11 0.24 0.33 16 6 C -0.17 0.30 10.26 22.40 0.23 0.53 16 7 C 0.00 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.02 5.87 -20.08 -0.12 -0.10 16 9 C -0.11 0.54 9.48 22.26 0.21 0.75 16 10 C -0.05 0.25 9.47 22.25 0.21 0.46 16 11 C -0.18 -0.50 5.89 -19.97 -0.12 -0.61 16 12 C 0.56 3.38 7.72 86.63 0.67 4.05 16 13 O -0.56 -8.43 14.80 16.90 0.25 -8.18 16 14 N -0.71 0.83 5.03 -445.93 -2.24 -1.41 16 15 C 0.15 0.02 2.45 44.99 0.11 0.13 16 16 H 0.06 0.38 7.58 -2.38 -0.02 0.36 16 17 C -0.12 -0.23 5.49 30.59 0.17 -0.06 16 18 C -0.10 -0.21 5.10 30.59 0.16 -0.06 16 19 C -0.09 0.14 2.43 -10.79 -0.03 0.11 16 20 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 21 C 0.08 -0.13 6.43 71.98 0.46 0.33 16 22 O -0.60 -0.80 13.20 -148.98 -1.97 -2.77 16 23 C -0.11 0.53 5.20 30.61 0.16 0.69 16 24 C -0.12 0.67 5.39 30.61 0.17 0.83 16 25 C 0.16 0.92 6.71 22.81 0.15 1.07 16 26 O -0.50 -4.23 11.56 -68.97 -0.80 -5.02 16 27 C -0.15 -0.56 9.65 22.61 0.22 -0.35 16 28 O -0.18 -0.59 8.79 -6.09 -0.05 -0.65 16 29 H 0.39 -1.61 8.70 -74.05 -0.64 -2.26 16 30 H 0.16 -0.86 7.96 -2.39 -0.02 -0.88 16 31 H -0.28 -1.36 7.11 99.48 0.71 -0.65 16 32 H -0.30 -1.81 7.11 99.48 0.71 -1.10 16 33 H 0.17 -0.56 8.06 -2.91 -0.02 -0.59 16 34 H 0.18 -1.46 7.24 -2.91 -0.02 -1.48 16 35 H 0.17 -1.94 6.95 -2.91 -0.02 -1.96 16 36 H 0.17 -2.22 6.37 -2.91 -0.02 -2.24 16 37 H 0.41 -3.49 6.61 -92.70 -0.61 -4.11 16 38 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.07 -0.02 8.14 -2.39 -0.02 -0.03 16 40 H 0.06 0.30 7.82 -2.38 -0.02 0.28 16 41 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 43 H 0.05 -0.12 8.14 -2.38 -0.02 -0.13 16 44 H 0.39 -2.66 9.12 -74.06 -0.68 -3.34 16 45 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 46 H 0.06 -0.24 8.14 -2.38 -0.02 -0.26 16 47 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 48 H 0.08 -0.56 8.14 -2.38 -0.02 -0.58 16 49 H 0.41 0.71 9.06 -74.06 -0.67 0.04 16 50 H 0.14 0.51 7.90 -2.91 -0.02 0.49 16 Total: 0.00 -26.95 411.90 -2.64 -29.59 By element: Atomic # 1 Polarization: -18.25 SS G_CDS: -1.55 Total: -19.79 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 3.43 Total: 8.66 kcal Atomic # 7 Polarization: 0.83 SS G_CDS: -2.24 Total: -1.41 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -4.49 Total: -18.91 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: 2.20 Total: 1.86 kcal Total: -26.95 -2.64 -29.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.740 kcal (2) G-P(sol) polarization free energy of solvation -26.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds