Wall clock time and date at job start Tue Mar 9 2021 12:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86305 * 109.46774 * 2 1 4 4 C 1.50692 * 109.47047 * 119.99916 * 2 1 3 5 5 C 1.38333 * 119.87336 * 65.00707 * 4 2 1 6 6 C 1.37997 * 120.13167 * 180.02562 * 5 4 2 7 7 C 1.39403 * 119.86759 * 359.97438 * 6 5 4 8 8 C 1.48278 * 120.12636 * 180.02562 * 7 6 5 9 9 C 1.39505 * 119.97849 * 179.97438 * 8 7 6 10 10 C 1.37667 * 120.02546 * 180.02562 * 9 8 7 11 11 C 1.39704 * 119.97648 * 359.97438 * 10 9 8 12 12 C 1.47715 * 120.02461 * 180.02562 * 11 10 9 13 13 O 1.21575 * 120.00205 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00323 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00366 * 179.97438 * 14 12 11 16 16 H 1.09000 * 109.47175 * 34.99887 * 15 14 12 17 17 C 1.53006 * 109.46998 * 154.99756 * 15 14 12 18 18 C 1.52999 * 109.46626 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47592 * 300.00035 * 18 17 15 20 20 H 1.09000 * 109.47140 * 300.00346 * 19 18 17 21 21 C 1.53002 * 109.47092 * 180.02562 * 19 18 17 22 22 O 1.42900 * 109.47073 * 65.00407 * 21 19 18 23 23 C 1.52996 * 109.47165 * 60.00300 * 19 18 17 24 24 C 1.52997 * 109.47204 * 274.99782 * 15 14 12 25 25 C 1.39708 * 119.95300 * 0.27912 * 11 10 9 26 26 C 1.37674 * 119.97171 * 359.42305 * 25 11 10 27 27 C 1.39401 * 119.75163 * 0.27292 * 7 6 5 28 28 C 1.38007 * 119.86570 * 359.44827 * 27 7 6 29 29 H 0.96693 * 114.00681 * 299.99645 * 1 2 3 30 30 H 1.09003 * 109.47414 * 240.00387 * 2 1 3 31 31 H 1.48497 * 109.99790 * 178.68134 * 3 2 1 32 32 H 1.48501 * 110.00000 * 300.00073 * 3 2 1 33 33 H 1.08002 * 119.93256 * 359.97438 * 5 4 2 34 34 H 1.07994 * 120.06865 * 179.97438 * 6 5 4 35 35 H 1.07998 * 119.98736 * 359.97438 * 9 8 7 36 36 H 1.08003 * 120.01046 * 179.97438 * 10 9 8 37 37 H 0.97001 * 119.99752 * 359.97438 * 14 12 11 38 38 H 1.08993 * 109.46955 * 300.00226 * 17 15 14 39 39 H 1.09000 * 109.47050 * 60.00054 * 17 15 14 40 40 H 1.09000 * 109.47160 * 60.00369 * 18 17 15 41 41 H 1.09002 * 109.46719 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.46847 * 185.00127 * 21 19 18 43 43 H 1.08999 * 109.47369 * 304.99894 * 21 19 18 44 44 H 0.96700 * 113.99971 * 180.02562 * 22 21 19 45 45 H 1.08992 * 109.47534 * 180.02562 * 23 19 18 46 46 H 1.08996 * 109.47134 * 59.99508 * 23 19 18 47 47 H 1.09000 * 109.47140 * 300.00127 * 24 15 14 48 48 H 1.09001 * 109.47230 * 59.99271 * 24 15 14 49 49 H 1.07997 * 120.01726 * 179.72256 * 25 11 10 50 50 H 1.07998 * 119.98782 * 180.30090 * 26 25 11 51 51 H 1.07994 * 120.07074 * 179.70804 * 27 7 6 52 52 H 1.08000 * 119.93519 * 180.27296 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6831 -2.0612 1.3957 6 6 2.1401 -2.7169 2.5206 7 6 2.8537 -2.0154 3.4913 8 6 3.3479 -2.7143 4.7020 9 6 4.0621 -2.0094 5.6711 10 6 4.5219 -2.6575 6.7953 11 6 4.2726 -4.0215 6.9657 12 6 4.7649 -4.7179 8.1718 13 8 5.3870 -4.1039 9.0169 14 7 4.5246 -6.0339 8.3355 15 6 5.0134 -6.7246 9.5314 16 1 4.9666 -6.0493 10.3857 17 6 4.1417 -7.9523 9.8034 18 6 4.6526 -8.6739 11.0520 19 6 6.1003 -9.1157 10.8292 20 1 6.1468 -9.7909 9.9748 21 6 6.6110 -9.8380 12.0777 22 8 5.8716 -11.0464 12.2648 23 6 6.9721 -7.8882 10.5573 24 6 6.4613 -7.1664 9.3092 25 6 3.5618 -4.7277 5.9920 26 6 3.0977 -4.0763 4.8715 27 6 3.0963 -0.6531 3.3219 28 6 2.6393 -0.0092 2.1900 29 1 -0.3934 0.4416 0.7650 30 1 1.7924 -0.5138 -0.8900 31 1 3.5345 1.7704 0.0321 32 1 1.5613 2.4679 -1.2085 33 1 1.1299 -2.6035 0.6432 34 1 1.9455 -3.7714 2.6488 35 1 4.2551 -0.9551 5.5390 36 1 5.0751 -2.1116 7.5452 37 1 4.0280 -6.5237 7.6614 38 1 3.1102 -7.6376 9.9616 39 1 4.1885 -8.6276 8.9491 40 1 4.6061 -7.9988 11.9064 41 1 4.0318 -9.5488 11.2455 42 1 7.6679 -10.0742 11.9540 43 1 6.4819 -9.1946 12.9480 44 1 6.1421 -11.5570 13.0402 45 1 8.0034 -8.2029 10.3982 46 1 6.9255 -7.2130 11.4117 47 1 6.5081 -7.8417 8.4549 48 1 7.0823 -6.2918 9.1153 49 1 3.3724 -5.7831 6.1206 50 1 2.5440 -4.6209 4.1210 51 1 3.6444 -0.1037 4.0728 52 1 2.8305 1.0452 2.0556 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:55 Heat of formation + Delta-G solvation = -77.246121 kcal Electronic energy + Delta-G solvation = -31456.086728 eV Core-core repulsion = 27157.882662 eV Total energy + Delta-G solvation = -4298.204066 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.182 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.57872 -40.84362 -39.88949 -39.06444 -37.54784 -37.39624 -35.36735 -34.02925 -32.63846 -31.87301 -31.71748 -31.46924 -30.41282 -27.19121 -26.11159 -24.66102 -24.34145 -23.79025 -22.65992 -22.49477 -21.91125 -21.34312 -20.82628 -19.25150 -18.44081 -18.19438 -17.75787 -17.48254 -16.86298 -16.40702 -16.33247 -16.13925 -15.93639 -15.90921 -15.62985 -15.40326 -15.13823 -14.99505 -14.95123 -14.86337 -14.73849 -14.33721 -14.21977 -14.06363 -13.96291 -13.58433 -13.44295 -13.21621 -13.16189 -13.01868 -12.75218 -12.54085 -12.27733 -12.14103 -12.11273 -11.94405 -11.63875 -11.60362 -11.47123 -11.30387 -11.00872 -10.83191 -10.76673 -10.41678 -10.14258 -10.06804 -9.95866 -9.07799 -5.01395 -0.69399 0.34456 0.40298 0.49936 1.30289 1.62242 1.78595 1.95545 2.04223 2.60567 3.00917 3.29057 3.39604 3.53507 3.59341 3.64807 3.65653 3.71608 3.81223 3.87047 3.95406 4.01415 4.05340 4.05830 4.25590 4.26661 4.28392 4.32878 4.36999 4.39558 4.47450 4.48151 4.51651 4.59016 4.64607 4.67608 4.69631 4.81201 4.88626 4.91445 4.94851 5.04503 5.06870 5.08401 5.12828 5.13705 5.20134 5.20346 5.26477 5.37147 5.40055 5.41445 5.48750 5.49962 5.65095 5.79390 5.93021 6.45057 6.75593 6.88343 7.12031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.074 4.074 3 Si 0.772 3.228 4 C -0.119 4.119 5 C -0.103 4.103 6 C -0.108 4.108 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.122 4.122 10 C -0.070 4.070 11 C -0.152 4.152 12 C 0.556 3.444 13 O -0.580 6.580 14 N -0.710 5.710 15 C 0.146 3.854 16 H 0.068 0.932 17 C -0.118 4.118 18 C -0.104 4.104 19 C -0.087 4.087 20 H 0.075 0.925 21 C 0.076 3.924 22 O -0.593 6.593 23 C -0.106 4.106 24 C -0.123 4.123 25 C -0.075 4.075 26 C -0.121 4.121 27 C -0.107 4.107 28 C -0.118 4.118 29 H 0.395 0.605 30 H 0.106 0.894 31 H -0.287 1.287 32 H -0.301 1.301 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.128 0.872 37 H 0.414 0.586 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.395 0.605 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.049 0.951 49 H 0.156 0.844 50 H 0.155 0.845 51 H 0.147 0.853 52 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.674 -2.019 0.560 2.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.184 4.184 3 Si 0.678 3.322 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.126 4.126 7 C -0.060 4.060 8 C -0.023 4.023 9 C -0.139 4.139 10 C -0.089 4.089 11 C -0.155 4.155 12 C 0.345 3.655 13 O -0.461 6.461 14 N -0.361 5.361 15 C 0.042 3.958 16 H 0.086 0.914 17 C -0.156 4.156 18 C -0.142 4.142 19 C -0.105 4.105 20 H 0.093 0.907 21 C -0.001 4.001 22 O -0.401 6.401 23 C -0.144 4.144 24 C -0.162 4.162 25 C -0.093 4.093 26 C -0.138 4.138 27 C -0.124 4.124 28 C -0.135 4.135 29 H 0.245 0.755 30 H 0.124 0.876 31 H -0.214 1.214 32 H -0.229 1.229 33 H 0.149 0.851 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.146 0.854 37 H 0.252 0.748 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.245 0.755 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.068 0.932 49 H 0.174 0.826 50 H 0.173 0.827 51 H 0.165 0.835 52 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.978 -1.130 -0.325 1.529 hybrid contribution 0.418 -0.835 0.070 0.936 sum -0.559 -1.965 -0.256 2.059 Atomic orbital electron populations 1.86472 1.17163 1.82165 1.50517 1.25156 0.85322 1.10635 0.97251 0.93775 0.77888 0.75593 0.84924 1.20531 0.99362 0.95187 0.96900 1.21102 0.99040 0.94023 0.97912 1.21512 0.96924 1.00987 0.93153 1.18937 0.99214 0.93918 0.93947 1.19152 0.96063 0.93898 0.93181 1.21394 0.98195 1.01303 0.93043 1.21265 0.96936 0.93369 0.97370 1.20009 1.04326 0.95257 0.95951 1.18572 0.78696 0.82332 0.85906 1.90767 1.42635 1.67254 1.45440 1.45918 1.57180 1.08633 1.24373 1.21018 0.93850 0.93691 0.87255 0.91411 1.21765 0.99040 0.95329 0.99497 1.21428 0.95647 0.99957 0.97190 1.21164 0.95450 0.96150 0.97783 0.90656 1.22268 0.94624 0.85738 0.97491 1.86414 1.63939 1.36897 1.52898 1.21419 0.99382 0.95988 0.97647 1.21824 0.95442 0.99917 0.98969 1.21464 0.94760 1.00802 0.92316 1.21467 1.00357 0.93583 0.98434 1.21494 0.99243 0.93665 0.98021 1.21141 0.98360 1.00206 0.93840 0.75474 0.87609 1.21382 1.22922 0.85119 0.83705 0.83274 0.85392 0.74838 0.90566 0.89937 0.92117 0.91096 0.92876 0.93118 0.75502 0.90693 0.91806 0.90644 0.93214 0.82635 0.82746 0.83497 0.83615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.23 12.83 -148.98 -1.91 -1.68 16 2 C -0.07 0.09 2.80 71.23 0.20 0.29 16 3 Si 0.77 -1.95 29.79 68.60 2.04 0.09 16 4 C -0.12 0.13 5.36 -19.82 -0.11 0.02 16 5 C -0.10 0.06 9.67 22.24 0.21 0.28 16 6 C -0.11 0.18 9.43 22.49 0.21 0.39 16 7 C -0.06 0.04 5.88 -20.05 -0.12 -0.08 16 8 C -0.02 0.01 5.88 -19.99 -0.12 -0.11 16 9 C -0.12 -0.04 9.41 22.44 0.21 0.17 16 10 C -0.07 -0.27 9.58 22.49 0.22 -0.05 16 11 C -0.15 -0.46 5.88 -20.06 -0.12 -0.58 16 12 C 0.56 3.59 7.73 86.75 0.67 4.26 16 13 O -0.58 -8.64 16.00 -3.95 -0.06 -8.70 16 14 N -0.71 0.01 5.03 -445.52 -2.24 -2.23 16 15 C 0.15 0.12 2.46 44.99 0.11 0.23 16 16 H 0.07 0.40 7.58 -2.39 -0.02 0.38 16 17 C -0.12 0.35 5.39 30.60 0.16 0.52 16 18 C -0.10 0.11 5.10 30.59 0.16 0.27 16 19 C -0.09 0.10 2.43 -10.80 -0.03 0.07 16 20 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 21 C 0.08 -0.12 6.43 71.98 0.46 0.35 16 22 O -0.59 -0.29 13.19 -148.98 -1.97 -2.26 16 23 C -0.11 0.10 5.20 30.58 0.16 0.26 16 24 C -0.12 -0.10 5.49 30.58 0.17 0.07 16 25 C -0.07 0.21 9.52 22.49 0.21 0.42 16 26 C -0.12 0.35 9.41 22.44 0.21 0.56 16 27 C -0.11 0.23 9.43 22.50 0.21 0.44 16 28 C -0.12 0.31 8.65 22.24 0.19 0.51 16 29 H 0.40 -3.30 8.70 -74.06 -0.64 -3.95 16 30 H 0.11 0.01 7.96 -2.39 -0.02 -0.01 16 31 H -0.29 -0.68 7.11 99.48 0.71 0.02 16 32 H -0.30 -1.60 7.11 99.48 0.71 -0.89 16 33 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 34 H 0.15 -0.85 6.19 -2.91 -0.02 -0.87 16 35 H 0.15 -0.58 6.19 -2.91 -0.02 -0.60 16 36 H 0.13 0.68 7.64 -2.91 -0.02 0.66 16 37 H 0.41 -2.62 6.62 -92.71 -0.61 -3.23 16 38 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 39 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.06 -0.02 8.14 -2.39 -0.02 -0.03 16 41 H 0.07 0.04 7.82 -2.39 -0.02 0.02 16 42 H 0.05 -0.16 8.14 -2.38 -0.02 -0.18 16 43 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.40 -2.93 9.12 -74.06 -0.68 -3.61 16 45 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 49 H 0.16 -1.45 6.39 -2.91 -0.02 -1.46 16 50 H 0.16 -1.19 6.19 -2.91 -0.02 -1.21 16 51 H 0.15 -0.88 6.19 -2.91 -0.02 -0.90 16 52 H 0.15 -1.00 4.89 -2.91 -0.01 -1.01 16 Total: 0.00 -22.77 413.11 -1.77 -24.54 By element: Atomic # 1 Polarization: -17.12 SS G_CDS: -0.92 Total: -18.04 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 3.29 Total: 8.28 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -2.24 Total: -2.23 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -3.94 Total: -12.64 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: 2.04 Total: 0.09 kcal Total: -22.77 -1.77 -24.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.704 kcal (2) G-P(sol) polarization free energy of solvation -22.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds