Wall clock time and date at job start Tue Mar 9 2021 12:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38899 * 119.67403 * 244.72832 * 4 2 1 6 6 C 1.36473 * 120.61443 * 179.71787 * 5 4 2 7 7 C 1.40064 * 119.83029 * 0.55811 * 6 5 4 8 8 C 1.41588 * 133.38484 * 179.72436 * 7 6 5 9 9 C 1.35867 * 107.72862 * 179.97438 * 8 7 6 10 10 C 1.47059 * 125.42262 * 179.97438 * 9 8 7 11 11 O 1.21642 * 120.00651 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99755 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00296 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.47293 * 35.00071 * 13 12 10 15 15 C 1.52999 * 109.47334 * 155.00199 * 13 12 10 16 16 C 1.53002 * 109.47158 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47117 * 299.99754 * 16 15 13 18 18 H 1.09005 * 109.47162 * 300.00404 * 17 16 15 19 19 C 1.53002 * 109.47117 * 179.97438 * 17 16 15 20 20 O 1.42902 * 109.46892 * 174.99934 * 19 17 16 21 21 C 1.52999 * 109.46906 * 60.00091 * 17 16 15 22 22 C 1.53001 * 109.47245 * 275.00140 * 13 12 10 23 23 N 1.38147 * 109.14810 * 359.97438 * 9 8 7 24 24 C 1.37488 * 108.78728 * 0.02562 * 23 9 8 25 25 C 1.37709 * 119.67598 * 65.00583 * 4 2 1 26 26 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 27 27 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 28 28 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 29 29 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 30 30 H 1.08000 * 119.68874 * 359.97438 * 5 4 2 31 31 H 1.07996 * 120.08208 * 180.25101 * 6 5 4 32 32 H 1.07998 * 126.13761 * 359.97438 * 8 7 6 33 33 H 0.97004 * 120.00110 * 0.02562 * 12 10 9 34 34 H 1.09000 * 109.46831 * 300.00109 * 15 13 12 35 35 H 1.08993 * 109.47322 * 60.00149 * 15 13 12 36 36 H 1.09002 * 109.46935 * 59.99945 * 16 15 13 37 37 H 1.08998 * 109.47270 * 179.97438 * 16 15 13 38 38 H 1.08996 * 109.46919 * 295.00190 * 19 17 16 39 39 H 1.09001 * 109.46693 * 55.00371 * 19 17 16 40 40 H 0.96699 * 113.99780 * 179.97438 * 20 19 17 41 41 H 1.08993 * 109.47322 * 59.99999 * 21 17 16 42 42 H 1.09000 * 109.46831 * 180.02562 * 21 17 16 43 43 H 1.09002 * 109.47374 * 299.99628 * 22 13 12 44 44 H 1.08998 * 109.46891 * 59.99669 * 22 13 12 45 45 H 0.97000 * 125.60885 * 180.02562 * 23 9 8 46 46 H 1.07999 * 120.09586 * 359.97121 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6461 -0.0036 2.1890 6 6 3.1049 -0.6264 3.3134 7 6 2.8643 -1.9935 3.4999 8 6 3.2015 -2.9093 4.5258 9 6 2.7023 -4.1238 4.1768 10 6 2.8300 -5.3570 4.9676 11 8 3.4225 -5.3400 6.0298 12 7 2.2906 -6.5064 4.5153 13 6 2.4182 -7.7352 5.3027 14 1 2.3778 -7.4922 6.3644 15 6 1.2720 -8.6863 4.9531 16 6 1.4050 -9.9694 5.7760 17 6 2.7414 -10.6429 5.4580 18 1 2.7822 -10.8862 4.3963 19 6 2.8747 -11.9256 6.2813 20 8 4.0672 -12.6146 5.9000 21 6 3.8877 -9.6917 5.8076 22 6 3.7547 -8.4085 4.9842 23 7 2.0556 -4.0155 2.9608 24 6 2.1436 -2.7138 2.5269 25 6 1.6818 -2.0552 1.3911 26 1 -0.3934 0.4418 0.7650 27 1 1.7924 -0.5139 -0.8899 28 1 3.5346 1.7702 0.0322 29 1 1.5616 2.4678 -1.2086 30 1 2.8371 1.0496 2.0451 31 1 3.6564 -0.0676 4.0549 32 1 3.7561 -2.6830 5.4244 33 1 1.8184 -6.5202 3.6681 34 1 0.3199 -8.2066 5.1801 35 1 1.3124 -8.9294 3.8914 36 1 1.3642 -9.7259 6.8377 37 1 0.5881 -10.6468 5.5273 38 1 2.9234 -11.6739 7.3407 39 1 2.0113 -12.5655 6.0992 40 1 4.2166 -13.4390 6.3828 41 1 3.8470 -9.4484 6.8692 42 1 4.8398 -10.1714 5.5806 43 1 3.7952 -8.6516 3.9224 44 1 4.5713 -7.7308 5.2332 45 1 1.6124 -4.7388 2.4905 46 1 1.1284 -2.5969 0.6382 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7207542_13158378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:00 Heat of formation + Delta-G solvation = -70.305928 kcal Electronic energy + Delta-G solvation = -27554.997257 eV Core-core repulsion = 23603.658129 eV Total energy + Delta-G solvation = -3951.339127 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.69793 -41.01728 -39.64550 -38.89808 -37.49431 -36.89715 -35.33762 -33.29324 -31.94257 -31.83783 -30.73017 -30.41205 -27.25737 -26.03747 -24.33947 -23.90413 -23.13083 -22.23258 -21.89595 -21.34389 -20.83781 -19.53733 -18.44822 -18.24070 -17.84223 -17.37053 -16.77799 -16.56184 -16.20631 -16.11440 -15.93630 -15.57053 -15.48067 -15.35626 -14.91400 -14.84861 -14.68642 -14.63083 -14.44430 -14.10411 -14.00257 -13.59746 -13.26300 -13.19357 -13.05607 -12.58603 -12.54832 -12.34635 -12.24601 -11.98937 -11.72800 -11.66780 -11.53947 -11.39431 -11.12731 -10.93184 -10.91275 -10.46171 -10.21186 -9.32586 -8.82971 -5.01049 -0.33870 0.51569 1.01213 1.28978 1.66197 1.75862 1.92186 2.00401 2.27580 2.77239 3.12756 3.41505 3.47500 3.58004 3.63482 3.68616 3.70100 3.85725 3.88765 4.00309 4.14649 4.23167 4.26016 4.28573 4.32884 4.36794 4.43048 4.43678 4.45663 4.50215 4.53356 4.60530 4.70117 4.83142 4.88888 4.91154 4.95789 4.98679 5.04468 5.18215 5.24097 5.33840 5.34657 5.39396 5.42848 5.52439 5.60974 5.96210 6.19316 6.35544 6.55446 6.63900 7.01096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.068 4.068 3 Si 0.691 3.309 4 C -0.088 4.088 5 C -0.145 4.145 6 C -0.051 4.051 7 C -0.116 4.116 8 C -0.100 4.100 9 C 0.014 3.986 10 C 0.585 3.415 11 O -0.516 6.516 12 N -0.726 5.726 13 C 0.145 3.855 14 H 0.093 0.907 15 C -0.125 4.125 16 C -0.110 4.110 17 C -0.090 4.090 18 H 0.079 0.921 19 C 0.079 3.921 20 O -0.574 6.574 21 C -0.107 4.107 22 C -0.130 4.130 23 N -0.578 5.578 24 C 0.115 3.885 25 C -0.104 4.104 26 H 0.380 0.620 27 H 0.113 0.887 28 H -0.257 1.257 29 H -0.256 1.256 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.159 0.841 33 H 0.395 0.605 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.381 0.619 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.417 0.583 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 -1.343 0.616 3.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.179 4.179 3 Si 0.593 3.407 4 C -0.090 4.090 5 C -0.163 4.163 6 C -0.069 4.069 7 C -0.121 4.121 8 C -0.127 4.127 9 C -0.096 4.096 10 C 0.372 3.628 11 O -0.391 6.391 12 N -0.376 5.376 13 C 0.041 3.959 14 H 0.111 0.889 15 C -0.163 4.163 16 C -0.148 4.148 17 C -0.109 4.109 18 H 0.097 0.903 19 C 0.001 3.999 20 O -0.379 6.379 21 C -0.146 4.146 22 C -0.169 4.169 23 N -0.183 5.183 24 C 0.005 3.995 25 C -0.124 4.124 26 H 0.227 0.773 27 H 0.130 0.870 28 H -0.182 1.182 29 H -0.181 1.181 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.176 0.824 33 H 0.228 0.772 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.228 0.772 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.255 0.745 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.336 -0.709 0.007 2.442 hybrid contribution -0.467 -1.586 -0.496 1.726 sum -2.804 -2.295 -0.489 3.656 Atomic orbital electron populations 1.86503 1.17059 1.81728 1.49318 1.25080 0.85249 1.10303 0.97264 0.94597 0.81197 0.77911 0.87037 1.20031 0.98768 0.93554 0.96690 1.20462 1.01543 0.99410 0.94913 1.20384 0.97538 0.91985 0.97012 1.18225 1.03658 0.94368 0.95836 1.20978 1.01994 0.89919 0.99827 1.20124 1.04730 0.96015 0.88683 1.17193 0.78971 0.81727 0.84928 1.90880 1.41516 1.85021 1.21658 1.45991 1.57758 1.08987 1.24905 1.21108 0.95284 0.82602 0.96870 0.88850 1.21783 0.97943 0.95587 1.00975 1.21456 0.96801 0.95922 1.00594 1.21204 0.95142 0.93664 1.00840 0.90296 1.22222 0.86888 0.93140 0.97672 1.86471 1.43801 1.40612 1.67025 1.21490 0.98912 0.94187 0.99962 1.21951 0.97183 0.97151 1.00574 1.41896 1.48917 1.08999 1.18516 1.18312 1.00719 0.83948 0.96531 1.19863 1.02722 0.93890 0.95961 0.77276 0.86956 1.18162 1.18106 0.85320 0.84971 0.82383 0.77156 0.90869 0.91161 0.91156 0.90965 0.93500 0.93610 0.77222 0.91711 0.90665 0.91723 0.91106 0.74509 0.85605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.05 12.83 -35.23 -0.45 -0.40 16 2 C -0.07 0.03 2.79 36.01 0.10 0.13 16 3 Si 0.69 -0.83 29.76 -169.99 -5.06 -5.89 16 4 C -0.09 0.00 5.36 -104.57 -0.56 -0.56 16 5 C -0.14 0.06 8.59 -39.97 -0.34 -0.28 16 6 C -0.05 -0.01 10.06 -39.53 -0.40 -0.41 16 7 C -0.12 -0.20 6.16 -106.93 -0.66 -0.86 16 8 C -0.10 -0.21 10.53 -39.16 -0.41 -0.62 16 9 C 0.01 0.02 6.97 -82.29 -0.57 -0.55 16 10 C 0.59 1.25 7.76 -12.68 -0.10 1.15 16 11 O -0.52 -2.95 16.50 5.24 0.09 -2.87 16 12 N -0.73 0.65 5.07 -55.00 -0.28 0.37 16 13 C 0.15 -0.09 2.45 -67.93 -0.17 -0.25 16 14 H 0.09 0.11 7.58 -51.93 -0.39 -0.28 16 15 C -0.12 0.32 5.39 -26.73 -0.14 0.17 16 16 C -0.11 0.25 5.20 -26.73 -0.14 0.11 16 17 C -0.09 0.08 2.43 -90.62 -0.22 -0.14 16 18 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 16 19 C 0.08 -0.08 6.43 37.16 0.24 0.16 16 20 O -0.57 -0.26 13.19 -35.23 -0.46 -0.72 16 21 C -0.11 -0.01 5.10 -26.71 -0.14 -0.15 16 22 C -0.13 -0.02 5.50 -26.71 -0.15 -0.17 16 23 N -0.58 0.32 6.07 -7.35 -0.04 0.27 16 24 C 0.11 0.12 7.25 -83.97 -0.61 -0.49 16 25 C -0.10 -0.05 9.69 -39.42 -0.38 -0.43 16 26 H 0.38 -1.46 8.70 45.56 0.40 -1.06 16 27 H 0.11 -0.02 7.96 -51.93 -0.41 -0.43 16 28 H -0.26 -0.32 7.11 56.52 0.40 0.08 16 29 H -0.26 -0.54 7.11 56.52 0.40 -0.13 16 30 H 0.13 -0.32 4.85 -52.49 -0.25 -0.58 16 31 H 0.13 -0.23 8.06 -52.49 -0.42 -0.65 16 32 H 0.16 0.22 8.06 -52.49 -0.42 -0.20 16 33 H 0.39 -1.42 7.66 -40.82 -0.31 -1.73 16 34 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 35 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 36 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 37 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 38 H 0.05 -0.07 8.14 -51.93 -0.42 -0.50 16 39 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 40 H 0.38 -1.35 9.12 45.56 0.42 -0.94 16 41 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 42 H 0.07 0.11 7.82 -51.93 -0.41 -0.30 16 43 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 44 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.42 -1.49 8.12 -40.82 -0.33 -1.83 16 46 H 0.13 -0.06 8.06 -52.49 -0.42 -0.48 16 LS Contribution 372.69 15.07 5.62 5.62 Total: 0.00 -9.12 372.69 -11.24 -20.36 By element: Atomic # 1 Polarization: -7.56 SS G_CDS: -5.99 Total: -13.56 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -4.65 Total: -3.19 kcal Atomic # 7 Polarization: 0.96 SS G_CDS: -0.32 Total: 0.64 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: -0.83 Total: -3.99 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: -5.06 Total: -5.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -9.12 -11.24 -20.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_13158378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.943 kcal (2) G-P(sol) polarization free energy of solvation -9.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds