Wall clock time and date at job start Tue Mar 9 2021 12:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86300 * 109.47199 * 2 1 4 4 C 1.50692 * 109.46833 * 239.99690 * 2 1 3 5 5 C 1.34193 * 126.54329 * 104.96343 * 4 2 1 6 6 N 1.36862 * 109.97057 * 180.02562 * 5 4 2 7 7 C 1.37400 * 109.98067 * 359.97438 * 6 5 4 8 8 C 1.39326 * 133.25156 * 179.97438 * 7 6 5 9 9 C 1.36358 * 120.23828 * 179.74126 * 8 7 6 10 10 C 1.40164 * 120.66483 * 0.51848 * 9 8 7 11 11 C 1.47656 * 119.97198 * 179.75224 * 10 9 8 12 12 O 1.21573 * 120.00152 * 179.72663 * 11 10 9 13 13 N 1.34781 * 119.99930 * 359.73326 * 11 10 9 14 14 C 1.46496 * 119.99775 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47565 * 34.99894 * 14 13 11 16 16 C 1.52997 * 109.46953 * 154.99854 * 14 13 11 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46626 * 299.99539 * 17 16 14 19 19 H 1.08993 * 109.47839 * 299.99931 * 18 17 16 20 20 C 1.53006 * 109.47000 * 180.02562 * 18 17 16 21 21 O 1.42897 * 109.47254 * 175.00316 * 20 18 17 22 22 C 1.52997 * 109.46991 * 60.00378 * 18 17 16 23 23 C 1.52996 * 109.47131 * 299.99311 * 22 18 17 24 24 C 1.39188 * 120.05577 * 359.48422 * 10 9 8 25 25 C 1.39233 * 119.39336 * 0.25201 * 24 10 9 26 26 H 0.96706 * 113.99806 * 59.99524 * 1 2 3 27 27 H 1.09001 * 109.46672 * 119.99973 * 2 1 3 28 28 H 1.48502 * 109.99546 * 298.67837 * 3 2 1 29 29 H 1.48498 * 110.00439 * 59.99827 * 3 2 1 30 30 H 1.08004 * 125.01141 * 0.06686 * 5 4 2 31 31 H 0.96999 * 125.00908 * 180.02562 * 6 5 4 32 32 H 1.08006 * 119.88031 * 0.02562 * 8 7 6 33 33 H 1.08003 * 119.66687 * 180.25732 * 9 8 7 34 34 H 0.97001 * 119.99650 * 359.97438 * 13 11 10 35 35 H 1.09001 * 109.47502 * 60.00124 * 16 14 13 36 36 H 1.09001 * 109.47289 * 299.99920 * 16 14 13 37 37 H 1.08993 * 109.46955 * 60.00011 * 17 16 14 38 38 H 1.09000 * 109.47050 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.47164 * 295.00510 * 20 18 17 40 40 H 1.08998 * 109.46741 * 54.99859 * 20 18 17 41 41 H 0.96702 * 113.99667 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.47289 * 179.97438 * 22 18 17 43 43 H 1.09000 * 109.47611 * 59.99933 * 22 18 17 44 44 H 1.08996 * 109.47452 * 300.00000 * 23 22 18 45 45 H 1.09000 * 109.47054 * 180.02562 * 23 22 18 46 46 H 1.07996 * 120.30636 * 180.27006 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.4600 -0.1388 -2.3232 6 7 2.8017 -1.1006 -3.2350 7 6 2.4952 -2.3456 -2.7413 8 6 2.6336 -3.6351 -3.2503 9 6 2.2358 -4.7109 -2.5129 10 6 1.6735 -4.5371 -1.2408 11 6 1.2430 -5.7125 -0.4577 12 8 0.7598 -5.5626 0.6478 13 7 1.3857 -6.9516 -0.9685 14 6 0.9590 -8.1178 -0.1913 15 1 0.0715 -7.8635 0.3880 16 6 0.6345 -9.2726 -1.1410 17 6 0.1895 -10.4908 -0.3293 18 6 1.3148 -10.9108 0.6184 19 1 2.2022 -11.1649 0.0389 20 6 0.8700 -12.1295 1.4297 21 8 1.9598 -12.5927 2.2297 22 6 1.6393 -9.7560 1.5682 23 6 2.0843 -8.5379 0.7565 24 6 1.5259 -3.2577 -0.7128 25 6 1.9363 -2.1579 -1.4615 26 1 -0.3933 0.4418 -0.7651 27 1 1.7923 -0.5138 0.8900 28 1 1.5880 2.4584 -1.2243 29 1 1.5616 2.4680 1.2084 30 1 2.5965 0.9235 -2.4624 31 1 3.2019 -0.9287 -4.1017 32 1 3.0619 -3.7835 -4.2307 33 1 2.3512 -5.7067 -2.9148 34 1 1.7710 -7.0711 -1.8506 35 1 1.5221 -9.5270 -1.7203 36 1 -0.1668 -8.9732 -1.8166 37 1 -0.6979 -10.2367 0.2503 38 1 -0.0422 -11.3134 -1.0059 39 1 0.0374 -11.8516 2.0759 40 1 0.5546 -12.9221 0.7513 41 1 1.7490 -13.3650 2.7721 42 1 2.4407 -10.0554 2.2437 43 1 0.7519 -9.5020 2.1479 44 1 2.9717 -8.7919 0.1769 45 1 2.3159 -7.7153 1.4331 46 1 1.0972 -3.1194 0.2687 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_13287722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:12 Heat of formation + Delta-G solvation = -73.733154 kcal Electronic energy + Delta-G solvation = -27849.106746 eV Core-core repulsion = 23897.619003 eV Total energy + Delta-G solvation = -3951.487743 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.47018 -41.19364 -39.65862 -38.07129 -37.59796 -37.31995 -35.28391 -33.29586 -31.91604 -31.75159 -30.69894 -30.13846 -26.52275 -26.41009 -24.55128 -23.79460 -23.45804 -22.20928 -21.52807 -21.00011 -20.63870 -19.35522 -18.56803 -18.12356 -17.67762 -17.51462 -16.96344 -16.42198 -16.28685 -15.98148 -15.84566 -15.65614 -15.47348 -15.19420 -14.99225 -14.90125 -14.79535 -14.53068 -14.14712 -14.00276 -13.74125 -13.61835 -13.50326 -13.18241 -12.96889 -12.62657 -12.52354 -12.26811 -12.14124 -12.12817 -11.80163 -11.60643 -11.44756 -11.31314 -10.99764 -10.82212 -10.81317 -10.48747 -10.14502 -9.33609 -8.82098 -4.87244 -0.16123 0.19957 1.34685 1.50912 1.60889 1.83594 2.00912 2.08202 2.12471 2.88018 3.30744 3.51436 3.58357 3.63265 3.70833 3.78647 3.83259 3.90141 3.96891 4.01360 4.14242 4.29492 4.34123 4.36516 4.41113 4.45845 4.48966 4.51734 4.54978 4.58936 4.61934 4.71403 4.79749 4.83216 4.95361 5.00216 5.07055 5.08420 5.14041 5.20456 5.26551 5.33699 5.37661 5.42238 5.46874 5.53101 5.57135 5.97902 6.51399 6.55357 6.61413 6.89237 7.19052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.064 4.064 3 Si 0.789 3.211 4 C -0.217 4.217 5 C 0.082 3.918 6 N -0.571 5.571 7 C 0.112 3.888 8 C -0.125 4.125 9 C -0.067 4.067 10 C -0.179 4.179 11 C 0.559 3.441 12 O -0.589 6.589 13 N -0.708 5.708 14 C 0.146 3.854 15 H 0.063 0.937 16 C -0.116 4.116 17 C -0.107 4.107 18 C -0.086 4.086 19 H 0.077 0.923 20 C 0.076 3.924 21 O -0.596 6.596 22 C -0.104 4.104 23 C -0.123 4.123 24 C -0.022 4.022 25 C -0.128 4.128 26 H 0.384 0.616 27 H 0.098 0.902 28 H -0.258 1.258 29 H -0.311 1.311 30 H 0.210 0.790 31 H 0.439 0.561 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.415 0.585 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.395 0.605 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -0.553 -9.587 10.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.172 4.172 3 Si 0.692 3.308 4 C -0.224 4.224 5 C -0.046 4.046 6 N -0.174 5.174 7 C 0.002 3.998 8 C -0.145 4.145 9 C -0.086 4.086 10 C -0.183 4.183 11 C 0.348 3.652 12 O -0.471 6.471 13 N -0.360 5.360 14 C 0.042 3.958 15 H 0.081 0.919 16 C -0.154 4.154 17 C -0.145 4.145 18 C -0.105 4.105 19 H 0.095 0.905 20 C -0.002 4.002 21 O -0.404 6.404 22 C -0.142 4.142 23 C -0.162 4.162 24 C -0.042 4.042 25 C -0.133 4.133 26 H 0.233 0.767 27 H 0.116 0.884 28 H -0.183 1.183 29 H -0.240 1.240 30 H 0.226 0.774 31 H 0.280 0.720 32 H 0.180 0.820 33 H 0.178 0.822 34 H 0.253 0.747 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.245 0.755 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.058 0.942 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.072 0.587 -8.707 9.629 hybrid contribution -1.337 -0.625 -0.100 1.479 sum 2.735 -0.038 -8.806 9.221 Atomic orbital electron populations 1.86602 1.19405 1.80637 1.49909 1.24787 0.82736 1.12543 0.97096 0.94074 0.89604 0.69904 0.77264 1.20758 1.11243 0.91457 0.98957 1.22173 0.98419 0.95721 0.88261 1.41756 1.53796 1.03135 1.18731 1.18626 0.99733 0.87889 0.93553 1.20069 1.04366 0.87947 1.02101 1.20885 0.95895 1.00275 0.91583 1.19593 1.08989 0.92165 0.97576 1.18535 0.77247 0.84142 0.85227 1.90760 1.46993 1.86855 1.22483 1.45842 1.63906 1.04684 1.21549 1.21008 0.96827 0.84956 0.93056 0.91877 1.21751 1.03195 0.93101 0.97384 1.21455 0.97307 0.97846 0.97873 1.21181 0.99626 0.93514 0.96160 0.90465 1.22308 0.88495 0.95952 0.93442 1.86432 1.39703 1.52456 1.61858 1.21418 1.01066 0.94038 0.97697 1.21851 0.98742 0.97387 0.98207 1.20588 0.94502 0.90807 0.98319 1.19192 1.05148 0.93513 0.95409 0.76696 0.88378 1.18291 1.23966 0.77372 0.71969 0.81983 0.82196 0.74691 0.89417 0.89953 0.91675 0.89278 0.93387 0.92108 0.75535 0.92260 0.92774 0.90687 0.94168 0.87666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.20 12.88 -148.98 -1.92 -6.11 16 2 C -0.06 -0.21 3.06 71.23 0.22 0.01 16 3 Si 0.79 -2.04 30.82 68.60 2.11 0.07 16 4 C -0.22 -0.51 5.58 -18.61 -0.10 -0.61 16 5 C 0.08 -0.39 10.43 82.98 0.87 0.48 16 6 N -0.57 3.29 6.05 -187.48 -1.13 2.16 16 7 C 0.11 0.05 7.27 39.19 0.28 0.34 16 8 C -0.12 0.35 10.00 22.09 0.22 0.57 16 9 C -0.07 0.06 9.46 22.30 0.21 0.28 16 10 C -0.18 -1.32 5.87 -20.09 -0.12 -1.44 16 11 C 0.56 5.91 7.73 86.73 0.67 6.59 16 12 O -0.59 -11.94 15.99 -3.95 -0.06 -12.00 16 13 N -0.71 -1.70 5.03 -445.60 -2.24 -3.94 16 14 C 0.15 0.43 2.46 44.99 0.11 0.54 16 15 H 0.06 0.55 7.58 -2.39 -0.02 0.53 16 16 C -0.12 0.43 5.39 30.60 0.16 0.59 16 17 C -0.11 0.36 5.20 30.60 0.16 0.52 16 18 C -0.09 0.01 2.43 -10.79 -0.03 -0.02 16 19 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16 20 C 0.08 -0.05 6.43 71.98 0.46 0.41 16 21 O -0.60 -1.41 13.20 -148.98 -1.97 -3.37 16 22 C -0.10 -0.43 5.10 30.59 0.16 -0.27 16 23 C -0.12 -0.58 5.49 30.59 0.17 -0.41 16 24 C -0.02 -0.25 9.64 22.74 0.22 -0.03 16 25 C -0.13 -0.85 6.34 -20.21 -0.13 -0.98 16 26 H 0.38 0.09 8.70 -74.05 -0.64 -0.56 16 27 H 0.10 0.54 7.96 -2.39 -0.02 0.52 16 28 H -0.26 0.74 7.00 99.48 0.70 1.43 16 29 H -0.31 -2.08 7.11 99.48 0.71 -1.37 16 30 H 0.21 -2.48 6.27 -2.91 -0.02 -2.50 16 31 H 0.44 -5.67 8.96 -92.71 -0.83 -6.50 16 32 H 0.16 -1.60 8.06 -2.91 -0.02 -1.63 16 33 H 0.16 -1.35 6.36 -2.91 -0.02 -1.37 16 34 H 0.41 -2.05 6.60 -92.71 -0.61 -2.66 16 35 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 36 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.06 -0.23 8.14 -2.39 -0.02 -0.24 16 41 H 0.40 -2.32 9.12 -74.06 -0.68 -2.99 16 42 H 0.06 0.41 7.82 -2.39 -0.02 0.39 16 43 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.11 1.71 7.64 -2.91 -0.02 1.68 16 Total: 0.00 -29.51 372.46 -3.36 -32.87 By element: Atomic # 1 Polarization: -14.55 SS G_CDS: -1.69 Total: -16.24 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 3.54 Total: 6.57 kcal Atomic # 7 Polarization: 1.59 SS G_CDS: -3.37 Total: -1.79 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -3.95 Total: -21.49 kcal Atomic # 14 Polarization: -2.04 SS G_CDS: 2.11 Total: 0.07 kcal Total: -29.51 -3.36 -32.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_13287722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.861 kcal (2) G-P(sol) polarization free energy of solvation -29.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds