Wall clock time and date at job start Tue Mar 9 2021 12:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34655 * 124.85229 * 2 1 4 4 C 1.36772 * 108.40293 * 180.02562 * 3 2 1 5 5 C 1.47259 * 126.94744 * 180.02562 * 4 3 2 6 6 O 1.21625 * 119.99734 * 179.97438 * 5 4 3 7 7 N 1.34775 * 119.99916 * 359.97438 * 5 4 3 8 8 C 1.46501 * 119.99925 * 180.02562 * 7 5 4 9 9 H 1.08991 * 109.47269 * 34.99707 * 8 7 5 10 10 C 1.52995 * 109.47027 * 155.00243 * 8 7 5 11 11 C 1.53006 * 109.47066 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47002 * 299.99911 * 11 10 8 13 13 H 1.09005 * 109.46865 * 299.99756 * 12 11 10 14 14 C 1.52997 * 109.47105 * 180.02562 * 12 11 10 15 15 O 1.42897 * 109.47243 * 174.99986 * 14 12 11 16 16 C 1.53003 * 109.47403 * 59.99764 * 12 11 10 17 17 C 1.52995 * 109.46914 * 299.99994 * 16 12 11 18 18 C 1.46688 * 106.11009 * 0.02562 * 4 3 2 19 19 C 1.34483 * 106.33484 * 359.73220 * 18 4 3 20 20 C 1.50703 * 125.57463 * 180.26350 * 19 18 4 21 21 O 1.42898 * 109.47325 * 210.18054 * 20 19 18 22 22 Si 1.86299 * 109.47305 * 330.18589 * 20 19 18 23 23 H 1.09002 * 109.47391 * 90.01864 * 1 2 3 24 24 H 1.09001 * 109.46813 * 330.01920 * 1 2 3 25 25 H 1.09004 * 109.47041 * 210.02047 * 1 2 3 26 26 H 1.08008 * 125.79960 * 359.97438 * 3 2 1 27 27 H 0.97000 * 119.99806 * 359.97438 * 7 5 4 28 28 H 1.09003 * 109.47020 * 299.99388 * 10 8 7 29 29 H 1.08999 * 109.47846 * 59.99712 * 10 8 7 30 30 H 1.09005 * 109.47111 * 59.99517 * 11 10 8 31 31 H 1.08995 * 109.47241 * 179.97438 * 11 10 8 32 32 H 1.09004 * 109.46796 * 294.99946 * 14 12 11 33 33 H 1.09003 * 109.47281 * 54.99710 * 14 12 11 34 34 H 0.96701 * 114.00325 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.46502 * 59.99803 * 16 12 11 36 36 H 1.08993 * 109.47221 * 180.02562 * 16 12 11 37 37 H 1.08997 * 109.47580 * 299.99763 * 17 16 12 38 38 H 1.08999 * 109.47078 * 179.97438 * 17 16 12 39 39 H 1.08004 * 126.83758 * 180.02562 * 18 4 3 40 40 H 1.09008 * 109.46805 * 90.18911 * 20 19 18 41 41 H 0.96707 * 113.99770 * 60.00354 * 21 20 19 42 42 H 1.48501 * 109.99509 * 58.68081 * 22 20 19 43 43 H 1.48500 * 109.99953 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1050 0.0000 4 6 3.5462 0.7177 -0.0006 5 6 4.7284 1.5958 -0.0003 6 8 5.8446 1.1128 -0.0004 7 7 4.5734 2.9346 0.0002 8 6 5.7495 3.8081 -0.0001 9 1 6.5428 3.3492 -0.5899 10 6 5.3791 5.1619 -0.6091 11 6 6.6072 6.0744 -0.6088 12 6 7.0916 6.2771 0.8283 13 1 6.2979 6.7359 1.4179 14 6 8.3193 7.1901 0.8287 15 8 8.7016 7.4736 2.1760 16 6 7.4620 4.9233 1.4374 17 6 6.2338 4.0109 1.4371 18 6 3.5375 -0.7491 -0.0016 19 6 2.2448 -1.1197 0.0045 20 6 1.7398 -2.5396 0.0116 21 8 0.4804 -2.6007 -0.6609 22 14 2.9643 -3.6387 -0.8621 23 1 -0.3634 -0.0003 -1.0277 24 1 -0.3633 0.8902 0.5135 25 1 -0.3633 -0.8898 0.5142 26 1 1.8767 2.1241 -0.0004 27 1 3.6831 3.3197 -0.0001 28 1 5.0336 5.0174 -1.6328 29 1 4.5857 5.6209 -0.0193 30 1 7.4010 5.6156 -1.1984 31 1 6.3435 7.0387 -1.0431 32 1 9.1419 6.6930 0.3145 33 1 8.0797 8.1214 0.3153 34 1 9.4749 8.0492 2.2527 35 1 8.2556 4.4646 0.8477 36 1 7.8066 5.0677 2.4613 37 1 5.4402 4.4696 2.0267 38 1 6.4978 3.0463 1.8706 39 1 4.3981 -1.4018 -0.0018 40 1 1.6186 -2.8770 1.0411 41 1 0.5131 -2.3141 -1.5839 42 1 4.2867 -3.5594 -0.1911 43 1 2.4782 -5.0418 -0.8613 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_13287730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:19 Heat of formation + Delta-G solvation = -83.748646 kcal Electronic energy + Delta-G solvation = -23961.040526 eV Core-core repulsion = 20393.796900 eV Total energy + Delta-G solvation = -3567.243626 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.47102 -40.83966 -39.36868 -37.74000 -37.38873 -35.17821 -33.75692 -32.00294 -31.76253 -30.74524 -27.64097 -26.54102 -25.77603 -23.90644 -23.52613 -22.01172 -21.25279 -20.79951 -20.36004 -19.04894 -18.17426 -17.46249 -17.12958 -16.95569 -16.76268 -16.22202 -15.80098 -15.69733 -15.46794 -15.34573 -15.01315 -14.89211 -14.72057 -14.54186 -14.10710 -13.94639 -13.51482 -13.42364 -13.23342 -13.16467 -13.08000 -12.91533 -12.26698 -12.18748 -12.11356 -12.10190 -11.58904 -11.42253 -11.28433 -10.94650 -10.80859 -10.75392 -10.09496 -9.58818 -9.22321 -5.01037 0.73672 1.02111 1.38401 1.61747 1.88189 2.04580 2.27441 2.54644 3.32103 3.33928 3.54853 3.63608 3.79323 3.85729 3.93761 3.99513 4.05146 4.30104 4.32131 4.37016 4.39708 4.42862 4.44591 4.51063 4.54307 4.54327 4.62751 4.72944 4.80506 4.85116 4.91175 4.93351 4.99167 5.10324 5.12799 5.15785 5.22916 5.38881 5.46806 5.55003 5.63322 5.95351 6.23831 6.61905 6.66726 6.89718 7.35556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.422 5.422 3 C 0.078 3.922 4 C -0.262 4.262 5 C 0.586 3.414 6 O -0.599 6.599 7 N -0.711 5.711 8 C 0.148 3.852 9 H 0.063 0.937 10 C -0.115 4.115 11 C -0.107 4.107 12 C -0.086 4.086 13 H 0.076 0.924 14 C 0.075 3.925 15 O -0.597 6.597 16 C -0.104 4.104 17 C -0.123 4.123 18 C -0.170 4.170 19 C -0.014 4.014 20 C -0.033 4.033 21 O -0.546 6.546 22 Si 0.784 3.216 23 H 0.098 0.902 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.212 0.788 27 H 0.413 0.587 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.395 0.605 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.396 0.604 42 H -0.301 1.301 43 H -0.284 1.284 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 5.753 -4.496 10.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.095 5.095 3 C -0.060 4.060 4 C -0.271 4.271 5 C 0.376 3.624 6 O -0.481 6.481 7 N -0.362 5.362 8 C 0.044 3.956 9 H 0.081 0.919 10 C -0.153 4.153 11 C -0.145 4.145 12 C -0.105 4.105 13 H 0.094 0.906 14 C -0.002 4.002 15 O -0.405 6.405 16 C -0.142 4.142 17 C -0.162 4.162 18 C -0.194 4.194 19 C -0.123 4.123 20 C -0.144 4.144 21 O -0.353 6.353 22 Si 0.690 3.310 23 H 0.116 0.884 24 H 0.120 0.880 25 H 0.110 0.890 26 H 0.228 0.772 27 H 0.250 0.750 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.245 0.755 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.147 0.853 40 H 0.132 0.868 41 H 0.246 0.754 42 H -0.229 1.229 43 H -0.211 1.211 Dipole moment (debyes) X Y Z Total from point charges -6.819 4.108 -3.753 8.801 hybrid contribution 0.566 0.441 0.773 1.055 sum -6.253 4.549 -2.980 8.287 Atomic orbital electron populations 1.22507 0.74027 1.05760 1.05515 1.43724 1.08206 1.04304 1.53288 1.22405 0.88714 0.93320 1.01557 1.20301 0.92479 0.93570 1.20799 1.17748 0.87795 0.82358 0.74460 1.90747 1.27993 1.76277 1.53072 1.45743 1.10505 1.04713 1.75274 1.20949 0.87833 0.90824 0.96028 0.91916 1.21736 0.98945 0.92505 1.02097 1.21459 0.97531 1.00629 0.94879 1.21183 0.97259 0.94578 0.97461 0.90593 1.22317 0.96551 0.98370 0.82987 1.86433 1.53195 1.73098 1.27782 1.21418 0.96939 0.94881 1.00995 1.21854 0.98521 0.98828 0.97000 1.21720 0.95487 0.93895 1.08309 1.20781 0.90011 0.90033 1.11510 1.24648 0.93817 0.93997 1.01983 1.86455 1.28742 1.89681 1.30436 0.93262 0.73489 0.75357 0.88895 0.88392 0.88034 0.88971 0.77176 0.74968 0.89781 0.89598 0.91605 0.89310 0.93341 0.92086 0.75545 0.92723 0.92465 0.90915 0.94412 0.85306 0.86820 0.75354 1.22860 1.21094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.60 9.82 127.77 1.25 0.65 16 2 N -0.42 1.34 3.09 -533.22 -1.65 -0.30 16 3 C 0.08 -0.23 10.83 83.92 0.91 0.68 16 4 C -0.26 -1.52 6.29 -19.04 -0.12 -1.64 16 5 C 0.59 5.80 7.77 86.62 0.67 6.47 16 6 O -0.60 -12.10 16.63 -4.11 -0.07 -12.17 16 7 N -0.71 -1.03 5.07 -445.96 -2.26 -3.29 16 8 C 0.15 0.35 2.46 44.99 0.11 0.46 16 9 H 0.06 0.51 7.58 -2.39 -0.02 0.49 16 10 C -0.12 0.51 5.39 30.59 0.16 0.68 16 11 C -0.11 0.42 5.20 30.60 0.16 0.58 16 12 C -0.09 0.03 2.43 -10.79 -0.03 0.00 16 13 H 0.08 0.04 8.14 -2.38 -0.02 0.02 16 14 C 0.08 -0.07 6.43 71.98 0.46 0.39 16 15 O -0.60 -1.35 13.20 -148.98 -1.97 -3.32 16 16 C -0.10 -0.42 5.10 30.59 0.16 -0.27 16 17 C -0.12 -0.57 5.49 30.60 0.17 -0.41 16 18 C -0.17 -1.27 9.49 23.62 0.22 -1.05 16 19 C -0.01 -0.02 6.14 40.98 0.25 0.23 16 20 C -0.03 0.04 2.86 71.24 0.20 0.25 16 21 O -0.55 2.52 10.31 -148.98 -1.54 0.98 16 22 Si 0.78 -0.02 31.29 68.60 2.15 2.13 16 23 H 0.10 -1.29 8.14 -2.39 -0.02 -1.31 16 24 H 0.10 -1.35 8.13 -2.39 -0.02 -1.37 16 25 H 0.09 -0.68 6.71 -2.38 -0.02 -0.70 16 26 H 0.21 -2.56 7.45 -2.91 -0.02 -2.58 16 27 H 0.41 -2.61 7.54 -92.71 -0.70 -3.31 16 28 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.09 -0.62 8.14 -2.39 -0.02 -0.63 16 30 H 0.07 -0.19 8.14 -2.38 -0.02 -0.21 16 31 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H 0.05 -0.08 8.14 -2.38 -0.02 -0.09 16 33 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.40 -2.37 9.12 -74.06 -0.68 -3.04 16 35 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.06 0.40 7.82 -2.39 -0.02 0.39 16 37 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.13 1.42 6.67 -2.91 -0.02 1.40 16 40 H 0.11 -0.03 7.96 -2.38 -0.02 -0.05 16 41 H 0.40 -4.69 8.70 -74.05 -0.64 -5.34 16 42 H -0.30 -2.46 6.77 99.48 0.67 -1.78 16 43 H -0.28 -1.48 7.11 99.48 0.71 -0.77 16 Total: 0.00 -26.70 346.41 -1.72 -28.42 By element: Atomic # 1 Polarization: -18.50 SS G_CDS: -0.98 Total: -19.48 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 4.59 Total: 7.04 kcal Atomic # 7 Polarization: 0.31 SS G_CDS: -3.91 Total: -3.59 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -3.57 Total: -14.51 kcal Atomic # 14 Polarization: -0.02 SS G_CDS: 2.15 Total: 2.13 kcal Total: -26.70 -1.72 -28.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_13287730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.328 kcal (2) G-P(sol) polarization free energy of solvation -26.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds