Wall clock time and date at job start Tue Mar 9 2021 12:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86299 * 109.47011 * 2 1 4 4 C 1.50700 * 109.47247 * 240.00329 * 2 1 3 5 5 C 1.34846 * 125.90154 * 150.18407 * 4 2 1 6 6 C 1.40943 * 107.47041 * 180.22945 * 5 4 2 7 7 C 1.34861 * 107.46286 * 359.75764 * 6 5 4 8 8 N 1.36567 * 108.20150 * 0.02562 * 7 6 5 9 9 C 1.40198 * 125.66921 * 179.97438 * 8 7 6 10 10 C 1.38832 * 120.06251 * 310.02057 * 9 8 7 11 11 C 1.38115 * 119.93448 * 180.02562 * 10 9 8 12 12 C 1.38275 * 120.06722 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.93494 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47042 * 90.00395 * 13 12 11 15 15 O 1.21279 * 120.00024 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99935 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99771 * 179.97438 * 16 14 13 18 18 H 1.08992 * 109.47397 * 325.00275 * 17 16 14 19 19 C 1.53002 * 109.46799 * 85.00174 * 17 16 14 20 20 C 1.52997 * 109.46817 * 179.97438 * 19 17 16 21 21 C 1.53005 * 109.47452 * 300.00239 * 20 19 17 22 22 H 1.09002 * 109.46935 * 300.00125 * 21 20 19 23 23 C 1.53002 * 109.47197 * 180.02562 * 21 20 19 24 24 O 1.42901 * 109.46914 * 174.99854 * 23 21 20 25 25 C 1.52999 * 109.47159 * 59.99536 * 21 20 19 26 26 C 1.52997 * 109.47317 * 300.00546 * 25 21 20 27 27 C 1.38274 * 120.12908 * 0.23715 * 12 11 10 28 28 C 1.38126 * 120.06964 * 359.48997 * 27 12 11 29 29 H 0.96704 * 113.99784 * 300.00101 * 1 2 3 30 30 H 1.09000 * 109.47502 * 119.99770 * 2 1 3 31 31 H 1.48500 * 110.00029 * 178.67983 * 3 2 1 32 32 H 1.48503 * 110.00322 * 300.00305 * 3 2 1 33 33 H 1.08006 * 126.26982 * 359.97438 * 5 4 2 34 34 H 1.07997 * 126.27296 * 179.79203 * 6 5 4 35 35 H 1.08003 * 125.89556 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.02865 * 359.97438 * 10 9 8 37 37 H 1.08003 * 119.96955 * 179.97438 * 11 10 9 38 38 H 1.08995 * 109.47434 * 330.00291 * 13 12 11 39 39 H 1.08999 * 109.47190 * 210.00276 * 13 12 11 40 40 H 0.97006 * 119.99662 * 0.02562 * 16 14 13 41 41 H 1.08993 * 109.47662 * 299.99952 * 19 17 16 42 42 H 1.09002 * 109.47075 * 60.00457 * 19 17 16 43 43 H 1.09002 * 109.47153 * 60.00231 * 20 19 17 44 44 H 1.09001 * 109.47289 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.46791 * 294.99945 * 23 21 20 46 46 H 1.08998 * 109.47254 * 54.99840 * 23 21 20 47 47 H 0.96697 * 113.99597 * 179.97438 * 24 23 21 48 48 H 1.08996 * 109.46929 * 179.97438 * 25 21 20 49 49 H 1.09002 * 109.46716 * 60.00455 * 25 21 20 50 50 H 1.09002 * 109.47153 * 299.99641 * 26 25 21 51 51 H 1.09001 * 109.46832 * 179.97438 * 26 25 21 52 52 H 1.08003 * 119.97187 * 179.74218 * 27 12 11 53 53 H 1.07993 * 120.03819 * 180.25609 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 3.0885 -0.4547 -1.8741 6 6 3.1672 -1.3377 -2.9698 7 6 2.0577 -2.1042 -2.9524 8 7 1.2948 -1.7262 -1.8847 9 6 0.0607 -2.2846 -1.5231 10 6 -0.9420 -2.4295 -2.4724 11 6 -2.1569 -2.9795 -2.1133 12 6 -2.3754 -3.3852 -0.8096 13 6 -3.7023 -3.9844 -0.4208 14 6 -3.6541 -5.4785 -0.6117 15 8 -2.6417 -6.0049 -1.0226 16 7 -4.7357 -6.2298 -0.3250 17 6 -4.6889 -7.6821 -0.5111 18 1 -4.0735 -7.9175 -1.3794 19 6 -4.0863 -8.3366 0.7336 20 6 -4.0380 -9.8535 0.5395 21 6 -5.4558 -10.3849 0.3195 22 1 -6.0710 -10.1492 1.1878 23 6 -5.4076 -11.9019 0.1259 24 8 -6.7390 -12.4133 0.0368 25 6 -6.0584 -9.7303 -0.9252 26 6 -6.1067 -8.2135 -0.7311 27 6 -1.3806 -3.2372 0.1394 28 6 -0.1615 -2.6930 -0.2151 29 1 -0.3933 0.4417 0.7651 30 1 1.7924 -0.5138 0.8900 31 1 3.5346 1.7703 0.0321 32 1 1.5614 2.4680 -1.2085 33 1 3.8191 0.2928 -1.6023 34 1 3.9693 -1.3912 -3.6909 35 1 1.8146 -2.8825 -3.6606 36 1 -0.7723 -2.1116 -3.4905 37 1 -2.9374 -3.0920 -2.8512 38 1 -4.4887 -3.5633 -1.0472 39 1 -3.9107 -3.7583 0.6249 40 1 -5.5453 -5.8087 0.0040 41 1 -3.0764 -7.9578 0.8906 42 1 -4.7018 -8.1013 1.6019 43 1 -3.4228 -10.0892 -0.3289 44 1 -3.6092 -10.3199 1.4264 45 1 -4.8670 -12.1341 -0.7916 46 1 -4.8983 -12.3603 0.9736 47 1 -6.7848 -13.3712 -0.0871 48 1 -7.0683 -10.1093 -1.0822 49 1 -5.4432 -9.9661 -1.7936 50 1 -6.7219 -7.9777 0.1373 51 1 -6.5356 -7.7472 -1.6180 52 1 -1.5554 -3.5511 1.1578 53 1 0.6165 -2.5815 0.5255 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_13287746.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:26 Heat of formation + Delta-G solvation = -46.883881 kcal Electronic energy + Delta-G solvation = -33273.444263 eV Core-core repulsion = 28883.819413 eV Total energy + Delta-G solvation = -4389.624850 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.193 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.80201 -41.26545 -40.10312 -39.28085 -37.66627 -37.42808 -35.17985 -34.89749 -32.25692 -32.16389 -31.79821 -31.28259 -30.96694 -27.93891 -26.07820 -25.96889 -23.99724 -23.79118 -23.47259 -22.15982 -21.59948 -21.45475 -20.79178 -20.55634 -18.84210 -18.26994 -18.26561 -18.03092 -17.58761 -17.01980 -16.53524 -16.25406 -15.99768 -15.83815 -15.75112 -15.71688 -15.43270 -15.11993 -14.89654 -14.86116 -14.61900 -14.57043 -14.46021 -14.27557 -13.98183 -13.53996 -13.43771 -13.33995 -13.26902 -13.17167 -13.12325 -12.86372 -12.77781 -12.56950 -12.25992 -12.13533 -12.08765 -12.03149 -11.62489 -11.44337 -11.28422 -10.92216 -10.84038 -10.60656 -10.40042 -10.03920 -9.95792 -9.22865 -9.16891 -5.00368 -0.00906 0.36631 0.95855 1.35187 1.65044 1.66767 1.77127 1.88814 2.07292 2.17527 2.74528 3.27149 3.28686 3.63157 3.66287 3.67195 3.71374 3.75563 3.88403 3.95220 4.04553 4.06446 4.07590 4.16851 4.26992 4.32232 4.34548 4.35210 4.38936 4.40276 4.43905 4.49105 4.52319 4.59566 4.60203 4.62295 4.69897 4.80336 4.82291 4.96109 4.96288 5.03018 5.06034 5.07669 5.09449 5.13339 5.20434 5.21631 5.30343 5.37401 5.44039 5.51247 5.55271 5.75148 5.80127 6.04123 6.39189 6.59627 6.84816 6.86817 7.30702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.055 4.055 3 Si 0.814 3.186 4 C 0.020 3.980 5 C -0.226 4.226 6 C -0.200 4.200 7 C -0.022 4.022 8 N -0.393 5.393 9 C 0.117 3.883 10 C -0.132 4.132 11 C -0.098 4.098 12 C -0.066 4.066 13 C -0.096 4.096 14 C 0.513 3.487 15 O -0.580 6.580 16 N -0.717 5.717 17 C 0.148 3.852 18 H 0.061 0.939 19 C -0.121 4.121 20 C -0.108 4.108 21 C -0.086 4.086 22 H 0.076 0.924 23 C 0.076 3.924 24 O -0.593 6.593 25 C -0.105 4.105 26 C -0.118 4.118 27 C -0.092 4.092 28 C -0.093 4.093 29 H 0.403 0.597 30 H 0.095 0.905 31 H -0.287 1.287 32 H -0.313 1.313 33 H 0.143 0.857 34 H 0.157 0.843 35 H 0.179 0.821 36 H 0.122 0.878 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.417 0.583 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.395 0.605 48 H 0.069 0.931 49 H 0.057 0.943 50 H 0.082 0.918 51 H 0.074 0.926 52 H 0.147 0.853 53 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.445 0.061 6.213 8.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.164 4.164 3 Si 0.719 3.281 4 C -0.091 4.091 5 C -0.251 4.251 6 C -0.223 4.223 7 C -0.149 4.149 8 N -0.065 5.065 9 C 0.028 3.972 10 C -0.152 4.152 11 C -0.117 4.117 12 C -0.067 4.067 13 C -0.135 4.135 14 C 0.300 3.700 15 O -0.460 6.460 16 N -0.369 5.369 17 C 0.043 3.957 18 H 0.079 0.921 19 C -0.160 4.160 20 C -0.146 4.146 21 C -0.105 4.105 22 H 0.094 0.906 23 C -0.002 4.002 24 O -0.401 6.401 25 C -0.144 4.144 26 C -0.156 4.156 27 C -0.111 4.111 28 C -0.112 4.112 29 H 0.255 0.745 30 H 0.113 0.887 31 H -0.214 1.214 32 H -0.241 1.241 33 H 0.161 0.839 34 H 0.175 0.825 35 H 0.196 0.804 36 H 0.140 0.860 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.254 0.746 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.245 0.755 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.101 0.899 51 H 0.093 0.907 52 H 0.165 0.835 53 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.619 0.442 5.130 7.621 hybrid contribution 0.534 -1.082 -0.771 1.432 sum -5.085 -0.640 4.359 6.728 Atomic orbital electron populations 1.86522 1.16482 1.82203 1.51333 1.24610 0.86396 1.10698 0.94676 0.94721 0.77087 0.72288 0.84009 1.20612 0.95022 0.94045 0.99388 1.20878 0.98969 1.05311 0.99895 1.21168 1.00059 0.99682 1.01425 1.22358 0.93847 1.04705 0.94035 1.41631 1.15377 1.26825 1.22662 1.17820 0.84333 0.99829 0.95255 1.21061 0.93125 1.01795 0.99178 1.21026 0.96461 0.97670 0.96494 1.19563 0.95956 0.97812 0.93324 1.20756 0.96056 0.89690 1.07046 1.21033 0.82690 0.90112 0.76131 1.90745 1.33000 1.75289 1.46921 1.46007 1.16152 1.07283 1.67422 1.20900 0.97562 0.79504 0.97766 0.92080 1.21813 1.00777 0.95137 0.98249 1.21439 0.95811 0.95002 1.02338 1.21158 0.96789 0.93295 0.99213 0.90562 1.22278 0.83490 0.94241 1.00184 1.86415 1.28153 1.29005 1.96550 1.21432 1.01492 0.94205 0.97228 1.21749 0.94689 0.95808 1.03309 1.21057 0.91707 0.97859 1.00468 1.20868 0.98401 0.97950 0.94026 0.74521 0.88703 1.21421 1.24147 0.83940 0.82526 0.80400 0.86012 0.84109 0.85101 0.84643 0.74561 0.93209 0.90484 0.92194 0.90815 0.93305 0.92873 0.75509 0.91262 0.92437 0.89891 0.90699 0.83520 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.31 9.83 -148.98 -1.46 -1.78 16 2 C -0.06 -0.10 2.27 71.24 0.16 0.06 16 3 Si 0.81 -0.05 31.25 68.60 2.14 2.10 16 4 C 0.02 0.20 6.05 41.04 0.25 0.45 16 5 C -0.23 -2.45 9.43 22.15 0.21 -2.24 16 6 C -0.20 -1.99 10.86 22.16 0.24 -1.75 16 7 C -0.02 -0.22 11.12 83.18 0.93 0.71 16 8 N -0.39 -4.33 2.87 -333.40 -0.96 -5.29 16 9 C 0.12 1.07 4.89 38.08 0.19 1.25 16 10 C -0.13 -1.01 9.66 22.38 0.22 -0.79 16 11 C -0.10 -0.38 9.69 22.25 0.22 -0.16 16 12 C -0.07 -0.09 4.37 -19.85 -0.09 -0.18 16 13 C -0.10 0.53 5.83 29.10 0.17 0.70 16 14 C 0.51 0.52 7.79 87.66 0.68 1.20 16 15 O -0.58 -6.76 15.70 -3.03 -0.05 -6.80 16 16 N -0.72 2.80 5.08 -442.54 -2.25 0.55 16 17 C 0.15 -0.13 2.45 44.99 0.11 -0.02 16 18 H 0.06 0.31 7.58 -2.39 -0.02 0.29 16 19 C -0.12 0.07 5.49 30.59 0.17 0.24 16 20 C -0.11 0.14 5.20 30.60 0.16 0.30 16 21 C -0.09 0.12 2.43 -10.79 -0.03 0.09 16 22 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 23 C 0.08 -0.11 6.43 71.98 0.46 0.35 16 24 O -0.59 -0.29 13.20 -148.98 -1.97 -2.26 16 25 C -0.11 0.13 5.10 30.59 0.16 0.29 16 26 C -0.12 0.46 5.39 30.59 0.16 0.63 16 27 C -0.09 -0.19 9.69 22.25 0.22 0.02 16 28 C -0.09 -0.53 7.66 22.38 0.17 -0.36 16 29 H 0.40 -4.17 8.74 -74.05 -0.65 -4.82 16 30 H 0.10 -0.22 7.96 -2.39 -0.02 -0.24 16 31 H -0.29 -1.41 6.89 99.48 0.69 -0.73 16 32 H -0.31 -3.04 7.11 99.48 0.71 -2.34 16 33 H 0.14 1.26 6.75 -2.91 -0.02 1.24 16 34 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 35 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.12 0.85 8.06 -2.91 -0.02 0.82 16 37 H 0.14 -0.01 8.06 -2.91 -0.02 -0.04 16 38 H 0.13 -1.36 8.08 -2.39 -0.02 -1.38 16 39 H 0.14 -1.52 8.08 -2.39 -0.02 -1.54 16 40 H 0.42 -4.43 8.60 -92.70 -0.80 -5.23 16 41 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 43 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 46 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 47 H 0.40 -2.92 9.12 -74.06 -0.68 -3.60 16 48 H 0.07 0.04 7.82 -2.39 -0.02 0.02 16 49 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 50 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 51 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 52 H 0.15 -0.41 8.06 -2.91 -0.02 -0.43 16 53 H 0.12 0.56 7.67 -2.91 -0.02 0.54 16 Total: 0.00 -28.77 425.86 -0.96 -29.73 By element: Atomic # 1 Polarization: -15.86 SS G_CDS: -1.18 Total: -17.04 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 4.75 Total: 0.78 kcal Atomic # 7 Polarization: -1.53 SS G_CDS: -3.20 Total: -4.73 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -3.48 Total: -10.84 kcal Atomic # 14 Polarization: -0.05 SS G_CDS: 2.14 Total: 2.10 kcal Total: -28.77 -0.96 -29.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_13287746.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.152 kcal (2) G-P(sol) polarization free energy of solvation -28.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds