Wall clock time and date at job start Tue Mar 9 2021 12:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86303 * 109.47267 * 2 1 4 4 C 1.50701 * 109.47001 * 120.00295 * 2 1 3 5 5 C 1.34175 * 125.43885 * 65.26276 * 4 2 1 6 6 C 1.47020 * 105.95334 * 180.12439 * 5 4 2 7 7 C 1.47380 * 127.19015 * 179.89352 * 6 5 4 8 8 O 1.21613 * 120.00134 * 359.70981 * 7 6 5 9 9 N 1.34777 * 119.99615 * 179.70671 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72401 * 9 7 6 11 11 H 1.08999 * 109.47228 * 325.27715 * 10 9 7 12 12 C 1.52999 * 109.47341 * 85.27876 * 10 9 7 13 13 C 1.52997 * 109.47188 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46860 * 299.99296 * 13 12 10 15 15 H 1.08999 * 109.47459 * 300.00495 * 14 13 12 16 16 C 1.53005 * 109.47033 * 180.02562 * 14 13 12 17 17 O 1.42900 * 109.46892 * 65.00664 * 16 14 13 18 18 C 1.53003 * 109.46811 * 60.01012 * 14 13 12 19 19 C 1.53001 * 109.47193 * 205.27836 * 10 9 7 20 20 C 1.36415 * 105.61604 * 359.63348 * 6 5 4 21 21 O 1.33654 * 108.39634 * 0.22434 * 20 6 5 22 22 H 0.96706 * 114.00100 * 59.99429 * 1 2 3 23 23 H 1.09003 * 109.46976 * 240.00311 * 2 1 3 24 24 H 1.48498 * 110.00047 * 298.68263 * 3 2 1 25 25 H 1.48508 * 109.99871 * 59.99981 * 3 2 1 26 26 H 1.08004 * 127.02091 * 0.02562 * 5 4 2 27 27 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 28 28 H 1.09001 * 109.46823 * 300.00095 * 12 10 9 29 29 H 1.08999 * 109.47091 * 59.99755 * 12 10 9 30 30 H 1.09002 * 109.46693 * 180.02562 * 13 12 10 31 31 H 1.08993 * 109.47585 * 60.00233 * 13 12 10 32 32 H 1.08996 * 109.47170 * 185.00373 * 16 14 13 33 33 H 1.09000 * 109.47001 * 305.00824 * 16 14 13 34 34 H 0.96700 * 114.00026 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.47291 * 180.02562 * 18 14 13 36 36 H 1.08999 * 109.47531 * 59.99527 * 18 14 13 37 37 H 1.08999 * 109.46935 * 300.00059 * 19 10 9 38 38 H 1.09004 * 109.47138 * 59.99988 * 19 10 9 39 39 H 1.07992 * 125.80157 * 180.22796 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7593 -2.0133 1.5012 6 6 2.4122 -2.2462 2.7978 7 6 2.5003 -3.5193 3.5349 8 8 1.9929 -4.5245 3.0753 9 7 3.1434 -3.5697 4.7183 10 6 3.2258 -4.8339 5.4539 11 1 2.3089 -5.4033 5.3017 12 6 4.4196 -5.6437 4.9441 13 6 4.5052 -6.9643 5.7119 14 6 4.6844 -6.6761 7.2038 15 1 5.6014 -6.1069 7.3564 16 6 4.7707 -7.9967 7.9717 17 8 5.9508 -8.7001 7.5782 18 6 3.4906 -5.8663 7.7137 19 6 3.4051 -4.5452 6.9457 20 6 2.9243 -1.0388 3.1731 21 8 2.6268 -0.1421 2.2278 22 1 -0.3934 0.4418 -0.7650 23 1 1.7923 -0.5138 -0.8900 24 1 1.5879 2.4586 -1.2242 25 1 1.5615 2.4679 1.2086 26 1 1.2449 -2.7418 0.8920 27 1 3.5478 -2.7679 5.0851 28 1 4.2918 -5.8494 3.8813 29 1 5.3365 -5.0744 5.0963 30 1 5.3560 -7.5410 5.3490 31 1 3.5884 -7.5335 5.5593 32 1 4.8090 -7.7930 9.0417 33 1 3.8940 -8.6046 7.7486 34 1 6.0703 -9.5489 8.0258 35 1 3.6184 -5.6605 8.7765 36 1 2.5736 -6.4355 7.5612 37 1 4.3220 -3.9758 7.0979 38 1 2.5546 -3.9682 7.3090 39 1 3.4764 -0.8412 4.0800 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7207542_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:02 Heat of formation + Delta-G solvation = -109.577043 kcal Electronic energy + Delta-G solvation = -22001.983046 eV Core-core repulsion = 18491.438374 eV Total energy + Delta-G solvation = -3510.544672 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.66453 -40.92638 -39.39770 -38.09392 -37.41211 -35.18380 -33.90618 -32.22988 -31.80712 -30.95825 -26.91845 -26.26064 -24.50215 -23.79049 -22.17491 -22.06112 -21.17018 -20.47783 -19.02346 -18.78498 -18.22239 -17.30548 -17.23418 -17.07663 -16.35819 -16.05401 -15.82709 -15.78476 -15.58820 -14.99973 -14.83227 -14.55788 -14.09377 -14.03235 -13.95864 -13.67039 -13.50456 -13.17855 -13.02692 -12.78269 -12.26161 -12.16932 -12.09208 -11.63425 -11.45842 -11.28810 -10.93708 -10.86409 -10.80630 -10.66408 -10.03283 -9.74801 -5.02180 0.28036 0.91844 1.11619 1.40965 1.71194 1.92163 2.09913 2.42308 3.17662 3.22185 3.48516 3.56465 3.63192 3.75407 3.86865 3.95291 3.96971 4.18326 4.22864 4.32632 4.38782 4.44047 4.44993 4.51309 4.58830 4.60566 4.64254 4.77374 4.83286 4.90878 5.00724 5.07335 5.13019 5.26460 5.28237 5.38405 5.43648 5.54126 5.90323 6.26451 6.50369 6.67851 7.27533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.039 4.039 3 Si 0.701 3.299 4 C -0.011 4.011 5 C -0.121 4.121 6 C -0.237 4.237 7 C 0.589 3.411 8 O -0.531 6.531 9 N -0.725 5.725 10 C 0.146 3.854 11 H 0.090 0.910 12 C -0.129 4.129 13 C -0.108 4.108 14 C -0.090 4.090 15 H 0.079 0.921 16 C 0.078 3.922 17 O -0.573 6.573 18 C -0.110 4.110 19 C -0.125 4.125 20 C 0.033 3.967 21 O -0.166 6.166 22 H 0.388 0.612 23 H 0.098 0.902 24 H -0.253 1.253 25 H -0.252 1.252 26 H 0.161 0.839 27 H 0.397 0.603 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.380 0.620 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.120 2.387 2.022 4.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.147 4.147 3 Si 0.600 3.400 4 C -0.059 4.059 5 C -0.141 4.141 6 C -0.241 4.241 7 C 0.377 3.623 8 O -0.407 6.407 9 N -0.376 5.376 10 C 0.042 3.958 11 H 0.108 0.892 12 C -0.168 4.168 13 C -0.146 4.146 14 C -0.108 4.108 15 H 0.097 0.903 16 C 0.001 3.999 17 O -0.379 6.379 18 C -0.148 4.148 19 C -0.163 4.163 20 C -0.038 4.038 21 O -0.062 6.062 22 H 0.238 0.762 23 H 0.116 0.884 24 H -0.177 1.177 25 H -0.175 1.175 26 H 0.179 0.821 27 H 0.231 0.769 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.227 0.773 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.750 3.015 1.840 4.476 hybrid contribution -1.023 -0.499 0.193 1.155 sum 1.727 2.516 2.032 3.666 Atomic orbital electron populations 1.86577 1.16880 1.80414 1.50319 1.23841 0.84959 1.12304 0.93629 0.94497 0.91328 0.73202 0.80950 1.21060 1.01221 0.92008 0.91606 1.22490 1.00834 0.95397 0.95359 1.21520 1.09109 0.94390 0.99112 1.17255 0.77702 0.87036 0.80356 1.90814 1.46648 1.35718 1.67562 1.45915 1.57621 1.12645 1.21466 1.21050 0.99931 0.84428 0.90413 0.89162 1.21932 0.97853 0.96333 1.00663 1.21484 1.02647 0.96769 0.93683 1.21202 0.99141 0.94938 0.95526 0.90268 1.22229 0.87268 0.93122 0.97321 1.86472 1.44433 1.37385 1.69604 1.21469 0.98299 0.95365 0.99670 1.21792 1.02756 0.98173 0.93537 1.24445 0.99715 0.86730 0.92884 1.83660 1.57322 1.38877 1.26296 0.76224 0.88443 1.17729 1.17534 0.82110 0.76902 0.91206 0.91668 0.90739 0.91827 0.93632 0.93552 0.77269 0.91037 0.91249 0.91090 0.90912 0.76888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.45 12.86 -35.23 -0.45 -0.90 16 2 C -0.04 0.01 2.96 36.01 0.11 0.12 16 3 Si 0.70 -0.86 32.09 -169.99 -5.46 -6.32 16 4 C -0.01 -0.02 6.22 -35.74 -0.22 -0.24 16 5 C -0.12 -0.37 10.90 -37.46 -0.41 -0.78 16 6 C -0.24 -0.49 6.31 -103.28 -0.65 -1.14 16 7 C 0.59 1.94 7.78 -12.54 -0.10 1.84 16 8 O -0.53 -3.98 16.64 5.27 0.09 -3.89 16 9 N -0.73 0.15 5.07 -54.90 -0.28 -0.13 16 10 C 0.15 0.02 2.45 -67.93 -0.17 -0.15 16 11 H 0.09 0.21 7.57 -51.93 -0.39 -0.19 16 12 C -0.13 -0.09 5.50 -26.73 -0.15 -0.24 16 13 C -0.11 -0.07 5.10 -26.73 -0.14 -0.20 16 14 C -0.09 0.05 2.43 -90.61 -0.22 -0.17 16 15 H 0.08 0.01 8.14 -51.93 -0.42 -0.42 16 16 C 0.08 -0.05 6.43 37.16 0.24 0.19 16 17 O -0.57 -0.39 13.19 -35.23 -0.46 -0.86 16 18 C -0.11 0.20 5.21 -26.70 -0.14 0.06 16 19 C -0.12 0.25 5.39 -26.70 -0.14 0.11 16 20 C 0.03 -0.03 11.61 30.08 0.35 0.32 16 21 O -0.17 -0.14 8.90 7.65 0.07 -0.07 16 22 H 0.39 -1.43 8.74 45.56 0.40 -1.03 16 23 H 0.10 -0.26 7.96 -51.93 -0.41 -0.67 16 24 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 25 H -0.25 -0.63 7.11 56.52 0.40 -0.23 16 26 H 0.16 0.52 8.06 -52.48 -0.42 0.09 16 27 H 0.40 -1.38 7.57 -40.82 -0.31 -1.69 16 28 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 30 H 0.07 0.14 7.82 -51.93 -0.41 -0.27 16 31 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.05 -0.07 8.14 -51.93 -0.42 -0.50 16 33 H 0.05 -0.05 8.14 -51.93 -0.42 -0.48 16 34 H 0.38 -1.27 9.12 45.56 0.42 -0.86 16 35 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 36 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 37 H 0.07 -0.20 8.14 -51.93 -0.42 -0.63 16 38 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 39 H 0.21 -1.22 7.47 -52.49 -0.39 -1.61 16 LS Contribution 327.00 15.07 4.93 4.93 Total: 0.00 -10.18 327.00 -8.15 -18.33 By element: Atomic # 1 Polarization: -5.88 SS G_CDS: -4.95 Total: -10.83 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -1.64 Total: -0.27 kcal Atomic # 7 Polarization: 0.15 SS G_CDS: -0.28 Total: -0.13 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.76 Total: -5.72 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: -5.46 Total: -6.32 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -10.18 -8.15 -18.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.244 kcal (2) G-P(sol) polarization free energy of solvation -10.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds