Wall clock time and date at job start Tue Mar 9 2021 12:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86303 * 109.47267 * 2 1 4 4 C 1.50701 * 109.47001 * 120.00295 * 2 1 3 5 5 C 1.34175 * 125.43885 * 65.26276 * 4 2 1 6 6 C 1.47020 * 105.95334 * 180.12439 * 5 4 2 7 7 C 1.47380 * 127.19015 * 179.89352 * 6 5 4 8 8 O 1.21613 * 120.00134 * 359.70981 * 7 6 5 9 9 N 1.34777 * 119.99615 * 179.70671 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72401 * 9 7 6 11 11 H 1.08999 * 109.47228 * 325.27715 * 10 9 7 12 12 C 1.52999 * 109.47341 * 85.27876 * 10 9 7 13 13 C 1.52997 * 109.47188 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46860 * 299.99296 * 13 12 10 15 15 H 1.08999 * 109.47459 * 300.00495 * 14 13 12 16 16 C 1.53005 * 109.47033 * 180.02562 * 14 13 12 17 17 O 1.42900 * 109.46892 * 65.00664 * 16 14 13 18 18 C 1.53003 * 109.46811 * 60.01012 * 14 13 12 19 19 C 1.53001 * 109.47193 * 205.27836 * 10 9 7 20 20 C 1.36415 * 105.61604 * 359.63348 * 6 5 4 21 21 O 1.33654 * 108.39634 * 0.22434 * 20 6 5 22 22 H 0.96706 * 114.00100 * 59.99429 * 1 2 3 23 23 H 1.09003 * 109.46976 * 240.00311 * 2 1 3 24 24 H 1.48498 * 110.00047 * 298.68263 * 3 2 1 25 25 H 1.48508 * 109.99871 * 59.99981 * 3 2 1 26 26 H 1.08004 * 127.02091 * 0.02562 * 5 4 2 27 27 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 28 28 H 1.09001 * 109.46823 * 300.00095 * 12 10 9 29 29 H 1.08999 * 109.47091 * 59.99755 * 12 10 9 30 30 H 1.09002 * 109.46693 * 180.02562 * 13 12 10 31 31 H 1.08993 * 109.47585 * 60.00233 * 13 12 10 32 32 H 1.08996 * 109.47170 * 185.00373 * 16 14 13 33 33 H 1.09000 * 109.47001 * 305.00824 * 16 14 13 34 34 H 0.96700 * 114.00026 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.47291 * 180.02562 * 18 14 13 36 36 H 1.08999 * 109.47531 * 59.99527 * 18 14 13 37 37 H 1.08999 * 109.46935 * 300.00059 * 19 10 9 38 38 H 1.09004 * 109.47138 * 59.99988 * 19 10 9 39 39 H 1.07992 * 125.80157 * 180.22796 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7593 -2.0133 1.5012 6 6 2.4122 -2.2462 2.7978 7 6 2.5003 -3.5193 3.5349 8 8 1.9929 -4.5245 3.0753 9 7 3.1434 -3.5697 4.7183 10 6 3.2258 -4.8339 5.4539 11 1 2.3089 -5.4033 5.3017 12 6 4.4196 -5.6437 4.9441 13 6 4.5052 -6.9643 5.7119 14 6 4.6844 -6.6761 7.2038 15 1 5.6014 -6.1069 7.3564 16 6 4.7707 -7.9967 7.9717 17 8 5.9508 -8.7001 7.5782 18 6 3.4906 -5.8663 7.7137 19 6 3.4051 -4.5452 6.9457 20 6 2.9243 -1.0388 3.1731 21 8 2.6268 -0.1421 2.2278 22 1 -0.3934 0.4418 -0.7650 23 1 1.7923 -0.5138 -0.8900 24 1 1.5879 2.4586 -1.2242 25 1 1.5615 2.4679 1.2086 26 1 1.2449 -2.7418 0.8920 27 1 3.5478 -2.7679 5.0851 28 1 4.2918 -5.8494 3.8813 29 1 5.3365 -5.0744 5.0963 30 1 5.3560 -7.5410 5.3490 31 1 3.5884 -7.5335 5.5593 32 1 4.8090 -7.7930 9.0417 33 1 3.8940 -8.6046 7.7486 34 1 6.0703 -9.5489 8.0258 35 1 3.6184 -5.6605 8.7765 36 1 2.5736 -6.4355 7.5612 37 1 4.3220 -3.9758 7.0979 38 1 2.5546 -3.9682 7.3090 39 1 3.4764 -0.8412 4.0800 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:01 Heat of formation + Delta-G solvation = -114.375941 kcal Electronic energy + Delta-G solvation = -22002.191142 eV Core-core repulsion = 18491.438374 eV Total energy + Delta-G solvation = -3510.752768 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.72873 -41.04842 -39.48687 -38.08722 -37.43366 -35.32371 -34.00375 -32.27876 -31.78923 -30.97069 -26.93731 -26.25702 -24.58392 -23.76153 -22.26515 -22.09043 -21.23499 -20.51855 -19.02627 -18.78146 -18.18979 -17.39765 -17.32958 -17.15463 -16.38697 -16.06800 -15.82039 -15.76542 -15.70439 -15.06542 -14.91277 -14.57374 -14.21648 -14.06071 -13.97594 -13.71482 -13.53573 -13.17493 -12.99069 -12.81318 -12.28288 -12.14708 -12.12197 -11.63182 -11.44847 -11.33862 -11.10944 -10.97643 -10.82003 -10.65161 -10.16140 -9.78768 -4.92351 0.24791 0.78473 1.17338 1.45982 1.74416 1.96315 2.02714 2.23799 3.29859 3.34157 3.49398 3.55925 3.62788 3.77319 3.90025 3.97776 4.01921 4.25545 4.29878 4.33877 4.40761 4.42888 4.49469 4.50263 4.52857 4.62184 4.71257 4.83131 4.88502 4.95954 5.07101 5.09023 5.11679 5.14686 5.21082 5.36830 5.41371 5.50009 5.83786 6.47511 6.49980 6.89303 7.14680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.052 4.052 3 Si 0.787 3.213 4 C -0.015 4.015 5 C -0.151 4.151 6 C -0.269 4.269 7 C 0.587 3.413 8 O -0.586 6.586 9 N -0.706 5.706 10 C 0.147 3.853 11 H 0.063 0.937 12 C -0.123 4.123 13 C -0.105 4.105 14 C -0.086 4.086 15 H 0.078 0.922 16 C 0.075 3.925 17 O -0.596 6.596 18 C -0.108 4.108 19 C -0.116 4.116 20 C 0.067 3.933 21 O -0.167 6.167 22 H 0.405 0.595 23 H 0.121 0.879 24 H -0.268 1.268 25 H -0.303 1.303 26 H 0.145 0.855 27 H 0.416 0.584 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.395 0.605 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.224 3.927 3.376 6.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.159 4.159 3 Si 0.690 3.310 4 C -0.063 4.063 5 C -0.171 4.171 6 C -0.274 4.274 7 C 0.376 3.624 8 O -0.468 6.468 9 N -0.358 5.358 10 C 0.043 3.957 11 H 0.082 0.918 12 C -0.162 4.162 13 C -0.143 4.143 14 C -0.105 4.105 15 H 0.096 0.904 16 C -0.003 4.003 17 O -0.404 6.404 18 C -0.146 4.146 19 C -0.154 4.154 20 C -0.004 4.004 21 O -0.063 6.063 22 H 0.258 0.742 23 H 0.138 0.862 24 H -0.194 1.194 25 H -0.230 1.230 26 H 0.163 0.837 27 H 0.254 0.746 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.245 0.755 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 3.879 4.558 3.200 6.787 hybrid contribution -1.380 -0.990 -0.206 1.711 sum 2.499 3.568 2.994 5.286 Atomic orbital electron populations 1.86526 1.17704 1.81068 1.51744 1.24220 0.84551 1.13518 0.93649 0.93533 0.89941 0.70402 0.77137 1.21358 1.01016 0.91699 0.92254 1.22551 1.02095 0.96051 0.96428 1.21487 1.11387 0.95111 0.99407 1.17515 0.77208 0.86795 0.80920 1.90781 1.49298 1.37601 1.69094 1.45751 1.56371 1.13414 1.20225 1.21017 0.98340 0.84239 0.92146 0.91846 1.21850 0.98637 0.96745 0.98931 1.21424 1.01453 0.96377 0.95031 1.21187 0.99665 0.95389 0.94252 0.90399 1.22315 0.86943 0.92950 0.98051 1.86430 1.45012 1.38594 1.70410 1.21469 0.97396 0.95140 1.00548 1.21764 1.04094 0.98424 0.91145 1.25337 0.97074 0.84982 0.92959 1.83698 1.57090 1.39110 1.26411 0.74232 0.86173 1.19375 1.23017 0.83729 0.74597 0.94066 0.90479 0.92251 0.92798 0.92181 0.93417 0.75541 0.89358 0.91709 0.89216 0.89927 0.71847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.28 12.86 -148.98 -1.92 -3.19 16 2 C -0.05 0.03 2.96 71.24 0.21 0.24 16 3 Si 0.79 -2.28 32.09 68.60 2.20 -0.08 16 4 C -0.02 -0.06 6.22 24.76 0.15 0.09 16 5 C -0.15 -1.20 10.90 23.65 0.26 -0.94 16 6 C -0.27 -1.31 6.31 -18.99 -0.12 -1.43 16 7 C 0.59 4.75 7.78 86.65 0.67 5.42 16 8 O -0.59 -10.75 16.64 -4.07 -0.07 -10.82 16 9 N -0.71 0.36 5.07 -445.84 -2.26 -1.90 16 10 C 0.15 0.12 2.45 44.99 0.11 0.23 16 11 H 0.06 0.43 7.57 -2.39 -0.02 0.41 16 12 C -0.12 -0.32 5.50 30.59 0.17 -0.15 16 13 C -0.10 -0.27 5.10 30.59 0.16 -0.12 16 14 C -0.09 0.12 2.43 -10.79 -0.03 0.09 16 15 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 16 C 0.07 -0.12 6.43 71.98 0.46 0.35 16 17 O -0.60 -0.91 13.19 -148.98 -1.97 -2.88 16 18 C -0.11 0.50 5.21 30.61 0.16 0.66 16 19 C -0.12 0.64 5.39 30.61 0.17 0.81 16 20 C 0.07 -0.22 11.61 67.39 0.78 0.56 16 21 O -0.17 -0.13 8.90 4.45 0.04 -0.09 16 22 H 0.41 -2.87 8.74 -74.05 -0.65 -3.52 16 23 H 0.12 -0.68 7.96 -2.39 -0.02 -0.69 16 24 H -0.27 0.15 7.11 99.48 0.71 0.85 16 25 H -0.30 -1.74 7.11 99.48 0.71 -1.03 16 26 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 27 H 0.42 -3.72 7.57 -92.71 -0.70 -4.42 16 28 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 0.33 7.82 -2.39 -0.02 0.31 16 31 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.40 -2.60 9.12 -74.06 -0.68 -3.27 16 35 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 36 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 38 H 0.08 -0.55 8.14 -2.38 -0.02 -0.57 16 39 H 0.27 -4.06 7.47 -2.91 -0.02 -4.08 16 Total: 0.00 -27.67 327.00 -1.72 -29.38 By element: Atomic # 1 Polarization: -15.33 SS G_CDS: -0.91 Total: -16.23 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 3.16 Total: 5.80 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -2.26 Total: -1.90 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -3.91 Total: -16.98 kcal Atomic # 14 Polarization: -2.28 SS G_CDS: 2.20 Total: -0.08 kcal Total: -27.67 -1.72 -29.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.993 kcal (2) G-P(sol) polarization free energy of solvation -27.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds