Wall clock time and date at job start Tue Mar 9 2021 12:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86302 * 109.47655 * 2 1 4 4 C 1.50698 * 109.47091 * 120.00115 * 2 1 3 5 5 C 1.31120 * 118.54867 * 249.99765 * 4 2 1 6 6 N 1.38921 * 121.85196 * 180.42279 * 5 4 2 7 7 C 1.47030 * 118.88337 * 346.68692 * 6 5 4 8 8 C 1.50703 * 109.82112 * 163.19980 * 7 6 5 9 9 O 1.21277 * 120.00063 * 339.99645 * 8 7 6 10 10 N 1.34773 * 119.99847 * 160.00085 * 8 7 6 11 11 C 1.46504 * 120.00111 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.46891 * 325.00262 * 11 10 8 13 13 C 1.53006 * 109.46883 * 84.99828 * 11 10 8 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47060 * 300.00449 * 14 13 11 16 16 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 17 17 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 18 18 O 1.42899 * 109.47310 * 174.99904 * 17 15 14 19 19 C 1.52996 * 109.47328 * 60.00126 * 15 14 13 20 20 C 1.52997 * 109.47417 * 204.99914 * 11 10 8 21 21 C 1.53547 * 107.65729 * 43.66400 * 7 6 5 22 22 C 1.50210 * 118.54688 * 70.01574 * 4 2 1 23 23 H 0.96703 * 114.00217 * 59.99993 * 1 2 3 24 24 H 1.09005 * 109.47335 * 239.99600 * 2 1 3 25 25 H 1.48503 * 109.99717 * 298.68058 * 3 2 1 26 26 H 1.48494 * 109.99827 * 59.99700 * 3 2 1 27 27 H 1.07997 * 119.07287 * 0.44688 * 5 4 2 28 28 H 0.96997 * 120.55772 * 166.70122 * 6 5 4 29 29 H 1.08997 * 109.82375 * 284.06174 * 7 6 5 30 30 H 0.97003 * 120.00265 * 0.02562 * 10 8 7 31 31 H 1.08998 * 109.46505 * 59.99948 * 13 11 10 32 32 H 1.08996 * 109.46884 * 300.00829 * 13 11 10 33 33 H 1.09002 * 109.47153 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.46832 * 60.00321 * 14 13 11 35 35 H 1.09002 * 109.46989 * 294.99668 * 17 15 14 36 36 H 1.08994 * 109.47704 * 54.99481 * 17 15 14 37 37 H 0.96693 * 114.00385 * 179.97438 * 18 17 15 38 38 H 1.08992 * 109.47554 * 59.99639 * 19 15 14 39 39 H 1.09004 * 109.47108 * 179.97438 * 19 15 14 40 40 H 1.09002 * 109.47045 * 60.00127 * 20 11 10 41 41 H 1.09001 * 109.47375 * 300.00052 * 20 11 10 42 42 H 1.08993 * 109.62314 * 58.77067 * 21 7 6 43 43 H 1.09002 * 109.61842 * 179.32991 * 21 7 6 44 44 H 1.09000 * 109.32938 * 280.18388 * 22 4 2 45 45 H 1.08995 * 109.32631 * 39.67255 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.5116 -0.0029 2.1695 6 7 3.0074 -0.5882 3.3277 7 6 2.6236 -1.9716 3.6447 8 6 3.5635 -2.5389 4.6772 9 8 4.6526 -2.0336 4.8485 10 7 3.1937 -3.6078 5.4101 11 6 4.1076 -4.1597 6.4134 12 1 5.1344 -4.0674 6.0593 13 6 3.9495 -3.3893 7.7258 14 6 4.9043 -3.9651 8.7734 15 6 4.5762 -5.4414 9.0058 16 1 3.5496 -5.5340 9.3600 17 6 5.5307 -6.0170 10.0539 18 8 5.1514 -7.3611 10.3564 19 6 4.7344 -6.2117 7.6934 20 6 3.7789 -5.6357 6.6457 21 6 2.7184 -2.7899 2.3489 22 6 1.7454 -2.1979 1.3267 23 1 -0.3934 0.4417 -0.7651 24 1 1.7923 -0.5139 -0.8900 25 1 1.5880 2.4585 -1.2243 26 1 1.5616 2.4678 1.2084 27 1 2.6064 1.0650 2.0391 28 1 3.5967 -0.0924 3.9175 29 1 1.6017 -1.9942 4.0233 30 1 2.3228 -4.0123 5.2728 31 1 2.9227 -3.4815 8.0797 32 1 4.1835 -2.3377 7.5603 33 1 4.7913 -3.4166 9.7086 34 1 5.9310 -3.8725 8.4192 35 1 6.5484 -6.0058 9.6637 36 1 5.4824 -5.4132 10.9600 37 1 5.7146 -7.7900 11.0151 38 1 5.7610 -6.1191 7.3392 39 1 4.5011 -7.2635 7.8591 40 1 3.8916 -6.1846 5.7107 41 1 2.7521 -5.7280 6.9997 42 1 3.7347 -2.7403 1.9583 43 1 2.4510 -3.8271 2.5507 44 1 0.7225 -2.4144 1.6347 45 1 1.9288 -2.6482 0.3512 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_15413834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:11 Heat of formation + Delta-G solvation = -113.399184 kcal Electronic energy + Delta-G solvation = -24604.361328 eV Core-core repulsion = 21008.520479 eV Total energy + Delta-G solvation = -3595.840848 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55489 -40.13438 -39.18209 -37.61065 -37.31753 -35.30524 -33.33223 -33.16231 -31.81361 -31.20548 -27.70588 -26.03561 -25.26782 -23.82177 -23.58088 -22.29196 -21.60696 -20.86530 -19.11387 -19.07480 -18.40440 -18.20471 -17.51401 -17.47295 -16.49141 -16.13532 -15.87567 -15.75214 -15.42096 -15.25408 -14.99846 -14.86197 -14.61202 -14.41986 -14.07206 -13.96761 -13.83477 -13.65500 -13.39162 -13.15892 -13.04501 -12.90324 -12.44488 -12.27688 -12.13322 -11.77695 -11.71068 -11.60474 -11.44589 -11.29473 -11.24875 -10.83148 -10.81142 -10.26354 -10.12754 -8.46831 -4.90369 1.30471 1.39382 1.46330 1.58510 1.88728 1.95336 2.62704 3.29117 3.48070 3.62081 3.65772 3.72208 3.77650 3.92316 3.96174 4.03559 4.08281 4.24157 4.26796 4.33893 4.39757 4.46217 4.48670 4.52317 4.58291 4.61192 4.64724 4.69728 4.78803 4.81561 4.95331 5.01044 5.06457 5.07679 5.13680 5.21094 5.23868 5.29410 5.37551 5.40649 5.49040 5.57131 6.25229 6.46066 6.70468 6.81398 6.88234 7.11153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.058 4.058 3 Si 0.741 3.259 4 C -0.247 4.247 5 C 0.136 3.864 6 N -0.736 5.736 7 C 0.137 3.863 8 C 0.515 3.485 9 O -0.570 6.570 10 N -0.709 5.709 11 C 0.148 3.852 12 H 0.069 0.931 13 C -0.123 4.123 14 C -0.107 4.107 15 C -0.087 4.087 16 H 0.073 0.927 17 C 0.076 3.924 18 O -0.594 6.594 19 C -0.105 4.105 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.052 4.052 23 H 0.387 0.613 24 H 0.081 0.919 25 H -0.293 1.293 26 H -0.300 1.300 27 H 0.138 0.862 28 H 0.407 0.593 29 H 0.103 0.897 30 H 0.416 0.584 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.395 0.605 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.064 0.936 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.477 -3.016 0.804 3.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.168 4.168 3 Si 0.649 3.351 4 C -0.257 4.257 5 C 0.015 3.985 6 N -0.369 5.369 7 C 0.028 3.972 8 C 0.301 3.699 9 O -0.448 6.448 10 N -0.361 5.361 11 C 0.043 3.957 12 H 0.087 0.913 13 C -0.161 4.161 14 C -0.145 4.145 15 C -0.106 4.106 16 H 0.092 0.908 17 C -0.002 4.002 18 O -0.402 6.402 19 C -0.143 4.143 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.089 4.089 23 H 0.236 0.764 24 H 0.099 0.901 25 H -0.221 1.221 26 H -0.229 1.229 27 H 0.155 0.845 28 H 0.244 0.756 29 H 0.120 0.880 30 H 0.253 0.747 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.245 0.755 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.082 0.918 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.632 -2.147 1.059 2.476 hybrid contribution -0.821 0.130 0.101 0.837 sum -0.189 -2.017 1.160 2.335 Atomic orbital electron populations 1.86574 1.19673 1.80354 1.50533 1.24719 0.83142 1.09883 0.99081 0.94497 0.91015 0.73790 0.75821 1.20157 1.12352 0.96140 0.97089 1.20514 0.95580 0.96518 0.85916 1.44332 1.54890 1.12834 1.24806 1.21102 0.97465 0.83988 0.94690 1.20784 0.87278 0.80426 0.81379 1.90714 1.24039 1.60839 1.69250 1.45952 1.21038 1.31189 1.37917 1.20985 0.93833 0.93431 0.87401 0.91297 1.21827 1.00616 0.99037 0.94637 1.21430 0.99547 0.94393 0.99102 1.21165 1.00009 0.94386 0.95000 0.90809 1.22278 0.97460 0.82813 0.97630 1.86414 1.60279 1.27950 1.65542 1.21439 0.99459 0.99701 0.93690 1.21770 1.00918 0.92886 1.00082 1.21845 1.00910 0.99628 0.93422 1.19964 0.98489 0.91150 0.99305 0.76417 0.90077 1.22097 1.22856 0.84507 0.75617 0.87959 0.74650 0.90801 0.93021 0.90826 0.91748 0.93087 0.92938 0.75500 0.92066 0.91258 0.90445 0.90113 0.91572 0.88177 0.91761 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.18 12.86 -148.98 -1.92 -4.09 16 2 C -0.06 -0.07 2.80 71.24 0.20 0.13 16 3 Si 0.74 0.22 29.92 68.60 2.05 2.27 16 4 C -0.25 -0.65 5.40 -16.76 -0.09 -0.74 16 5 C 0.14 0.35 9.61 83.41 0.80 1.15 16 6 N -0.74 -1.79 5.46 -328.99 -1.80 -3.59 16 7 C 0.14 -0.04 3.36 44.33 0.15 0.11 16 8 C 0.52 1.13 7.05 87.66 0.62 1.75 16 9 O -0.57 -5.87 15.77 -3.02 -0.05 -5.92 16 10 N -0.71 2.13 5.08 -442.52 -2.25 -0.11 16 11 C 0.15 -0.19 2.45 44.99 0.11 -0.08 16 12 H 0.07 0.24 7.58 -2.39 -0.02 0.23 16 13 C -0.12 0.10 5.49 30.60 0.17 0.27 16 14 C -0.11 0.21 5.20 30.59 0.16 0.37 16 15 C -0.09 0.15 2.43 -10.79 -0.03 0.12 16 16 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 17 C 0.08 -0.15 6.43 71.98 0.46 0.32 16 18 O -0.59 -0.15 13.20 -148.98 -1.97 -2.11 16 19 C -0.10 0.19 5.10 30.61 0.16 0.35 16 20 C -0.12 0.50 5.39 30.61 0.17 0.66 16 21 C -0.12 0.21 5.47 30.79 0.17 0.37 16 22 C -0.05 -0.02 5.85 29.71 0.17 0.16 16 23 H 0.39 -1.34 8.74 -74.06 -0.65 -1.99 16 24 H 0.08 -0.15 7.96 -2.38 -0.02 -0.17 16 25 H -0.29 -1.44 7.11 99.48 0.71 -0.74 16 26 H -0.30 -2.10 6.88 99.48 0.68 -1.42 16 27 H 0.14 0.11 4.34 -2.91 -0.01 0.10 16 28 H 0.41 1.18 8.12 -92.71 -0.75 0.42 16 29 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.42 -3.62 8.60 -92.71 -0.80 -4.42 16 31 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.40 -3.03 9.12 -74.06 -0.68 -3.70 16 38 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.07 0.01 7.82 -2.38 -0.02 -0.01 16 40 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 41 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.08 -0.06 8.14 -2.39 -0.02 -0.07 16 Total: 0.00 -18.42 352.72 -4.55 -22.97 By element: Atomic # 1 Polarization: -12.50 SS G_CDS: -1.84 Total: -14.34 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 3.21 Total: 4.93 kcal Atomic # 7 Polarization: 0.34 SS G_CDS: -4.04 Total: -3.70 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -3.93 Total: -12.13 kcal Atomic # 14 Polarization: 0.22 SS G_CDS: 2.05 Total: 2.27 kcal Total: -18.42 -4.55 -22.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_15413834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.428 kcal (2) G-P(sol) polarization free energy of solvation -18.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds