Wall clock time and date at job start Tue Mar 9 2021 12:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47307 * 2 1 4 4 C 1.50709 * 109.46920 * 240.00105 * 2 1 3 5 5 C 1.34495 * 125.49182 * 150.02790 * 4 2 1 6 6 C 1.46752 * 106.36451 * 179.97438 * 5 4 2 7 7 C 1.47262 * 126.96881 * 179.97438 * 6 5 4 8 8 O 1.21622 * 119.99846 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00087 * 359.97438 * 7 6 5 10 10 C 1.46500 * 119.99853 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47105 * 35.00549 * 10 9 7 12 12 C 1.53004 * 109.46943 * 154.99656 * 10 9 7 13 13 C 1.52995 * 109.47219 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46877 * 299.99980 * 13 12 10 15 15 H 1.08997 * 109.47029 * 299.99815 * 14 13 12 16 16 C 1.52998 * 109.46789 * 180.02562 * 14 13 12 17 17 O 1.42899 * 109.47232 * 175.00280 * 16 14 13 18 18 C 1.52992 * 109.47109 * 60.00291 * 14 13 12 19 19 C 1.52994 * 109.47362 * 274.99809 * 10 9 7 20 20 C 1.36278 * 106.08109 * 0.02562 * 6 5 4 21 21 C 1.50996 * 126.84028 * 180.02562 * 20 6 5 22 22 C 1.53399 * 108.28820 * 164.29732 * 21 20 6 23 23 C 1.53158 * 109.04290 * 48.44129 * 22 21 20 24 24 C 1.53127 * 109.52663 * 290.42632 * 23 22 21 25 25 N 1.35277 * 108.65976 * 359.97438 * 20 6 5 26 26 H 0.96699 * 113.99782 * 60.00106 * 1 2 3 27 27 H 1.08999 * 109.47054 * 120.00655 * 2 1 3 28 28 H 1.48493 * 109.99835 * 59.99999 * 3 2 1 29 29 H 1.48501 * 110.00063 * 181.32025 * 3 2 1 30 30 H 1.07995 * 126.81936 * 359.97438 * 5 4 2 31 31 H 0.97004 * 119.99963 * 359.97438 * 9 7 6 32 32 H 1.08996 * 109.47257 * 300.00576 * 12 10 9 33 33 H 1.09006 * 109.47007 * 60.00029 * 12 10 9 34 34 H 1.08992 * 109.47411 * 60.00099 * 13 12 10 35 35 H 1.08999 * 109.47249 * 180.02562 * 13 12 10 36 36 H 1.09010 * 109.47221 * 294.99510 * 16 14 13 37 37 H 1.08998 * 109.47592 * 55.00070 * 16 14 13 38 38 H 0.96703 * 114.00591 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47486 * 59.99300 * 18 14 13 40 40 H 1.09000 * 109.47226 * 179.97438 * 18 14 13 41 41 H 1.09006 * 109.46959 * 300.00198 * 19 10 9 42 42 H 1.09002 * 109.47428 * 60.00011 * 19 10 9 43 43 H 1.09002 * 109.70759 * 44.58576 * 21 20 6 44 44 H 1.09003 * 109.70777 * 284.01080 * 21 20 6 45 45 H 1.09000 * 109.53807 * 168.31310 * 22 21 20 46 46 H 1.08998 * 109.54262 * 288.57287 * 22 21 20 47 47 H 1.08998 * 109.46318 * 50.44727 * 23 22 21 48 48 H 1.08998 * 109.45759 * 170.40799 * 23 22 21 49 49 H 1.08995 * 109.56733 * 170.83179 * 24 23 22 50 50 H 1.09006 * 109.56610 * 291.06625 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 3.0859 -0.4467 -1.8679 6 6 3.1556 -1.3781 -2.9997 7 6 4.2338 -1.4801 -3.9976 8 8 4.1613 -2.3044 -4.8890 9 7 5.3007 -0.6600 -3.9232 10 6 6.3735 -0.7619 -4.9157 11 1 5.9480 -1.0198 -5.8855 12 6 7.1018 0.5797 -5.0190 13 6 8.2217 0.4736 -6.0559 14 6 9.2112 -0.6124 -5.6284 15 1 9.6371 -0.3545 -4.6587 16 6 10.3315 -0.7181 -6.6650 17 8 11.3158 -1.6485 -6.2095 18 6 8.4830 -1.9539 -5.5252 19 6 7.3628 -1.8477 -4.4877 20 6 2.0199 -2.1291 -2.9411 21 6 1.6157 -3.2346 -3.8868 22 6 0.4935 -4.0461 -3.2271 23 6 -0.5708 -3.0836 -2.6917 24 6 -0.0063 -2.3091 -1.4975 25 7 1.2882 -1.7249 -1.8775 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5139 0.8899 28 1 1.5616 2.4678 1.2084 29 1 3.5347 1.7702 -0.0322 30 1 3.8167 0.3020 -1.5999 31 1 5.3583 -0.0023 -3.2125 32 1 6.3969 1.3532 -5.3238 33 1 7.5273 0.8377 -4.0491 34 1 7.7959 0.2158 -7.0255 35 1 8.7408 1.4292 -6.1291 36 1 9.9180 -1.0619 -7.6132 37 1 10.7925 0.2600 -6.8029 38 1 12.0576 -1.7663 -6.8186 39 1 8.0571 -2.2117 -6.4948 40 1 9.1880 -2.7276 -5.2211 41 1 7.7883 -1.5896 -3.5179 42 1 6.8440 -2.8035 -4.4141 43 1 2.4707 -3.8816 -4.0828 44 1 1.2576 -2.8052 -4.8226 45 1 0.0448 -4.7131 -3.9632 46 1 0.9025 -4.6318 -2.4039 47 1 -0.8553 -2.3833 -3.4771 48 1 -1.4468 -3.6501 -2.3759 49 1 -0.6974 -1.5139 -1.2184 50 1 0.1302 -2.9867 -0.6545 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7207542_16915396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:19 Heat of formation + Delta-G solvation = -94.070160 kcal Electronic energy + Delta-G solvation = -29980.686234 eV Core-core repulsion = 25973.693655 eV Total energy + Delta-G solvation = -4006.992579 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.73531 -40.68182 -39.22695 -38.05866 -37.32164 -36.89515 -34.92961 -33.43227 -31.72173 -31.42483 -31.10113 -29.30314 -26.73472 -26.00970 -24.67233 -23.84784 -23.60673 -21.98337 -21.76489 -21.06523 -20.63548 -19.54875 -18.84703 -18.16647 -17.34307 -17.11349 -16.71200 -16.49041 -16.14026 -16.09260 -15.75127 -15.52306 -15.44361 -15.21866 -15.10449 -14.89775 -14.65320 -14.54938 -14.45020 -14.22030 -13.97530 -13.77679 -13.36485 -13.26895 -13.08084 -12.92227 -12.76623 -12.35624 -12.14893 -12.08455 -12.07070 -12.01927 -11.84552 -11.79090 -11.53376 -11.35390 -11.18513 -10.82238 -10.74954 -10.53374 -9.83294 -9.49457 -8.96670 -5.07885 0.90726 1.02115 1.37189 1.58149 1.77415 1.98453 2.52174 2.78113 3.14975 3.23965 3.44722 3.54056 3.67007 3.68668 3.77976 3.80394 3.85282 3.98899 4.06283 4.22694 4.27892 4.32576 4.34936 4.38953 4.40245 4.42101 4.51725 4.53972 4.58809 4.60081 4.64349 4.68567 4.70647 4.75694 4.83929 4.86299 4.90711 4.99828 5.05541 5.10575 5.16439 5.18175 5.20370 5.26853 5.37001 5.47437 5.53933 5.74376 5.80707 6.08389 6.25578 6.32926 6.71810 6.82300 7.59435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.045 4.045 3 Si 0.718 3.282 4 C -0.011 4.011 5 C -0.169 4.169 6 C -0.233 4.233 7 C 0.594 3.406 8 O -0.549 6.549 9 N -0.726 5.726 10 C 0.148 3.852 11 H 0.089 0.911 12 C -0.125 4.125 13 C -0.109 4.109 14 C -0.090 4.090 15 H 0.078 0.922 16 C 0.079 3.921 17 O -0.573 6.573 18 C -0.107 4.107 19 C -0.129 4.129 20 C 0.120 3.880 21 C -0.055 4.055 22 C -0.130 4.130 23 C -0.138 4.138 24 C 0.099 3.901 25 N -0.426 5.426 26 H 0.379 0.621 27 H 0.116 0.884 28 H -0.253 1.253 29 H -0.252 1.252 30 H 0.146 0.854 31 H 0.398 0.602 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.380 0.620 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.106 0.894 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.932 3.564 -0.964 4.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.155 4.155 3 Si 0.617 3.383 4 C -0.120 4.120 5 C -0.193 4.193 6 C -0.243 4.243 7 C 0.384 3.616 8 O -0.428 6.428 9 N -0.376 5.376 10 C 0.043 3.957 11 H 0.107 0.893 12 C -0.163 4.163 13 C -0.147 4.147 14 C -0.108 4.108 15 H 0.096 0.904 16 C 0.001 3.999 17 O -0.379 6.379 18 C -0.145 4.145 19 C -0.168 4.168 20 C 0.003 3.997 21 C -0.093 4.093 22 C -0.167 4.167 23 C -0.176 4.176 24 C -0.022 4.022 25 N -0.102 5.102 26 H 0.227 0.773 27 H 0.133 0.867 28 H -0.177 1.177 29 H -0.177 1.177 30 H 0.164 0.836 31 H 0.232 0.768 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.227 0.773 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.106 0.894 49 H 0.124 0.876 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.168 3.108 0.028 3.789 hybrid contribution 0.554 -0.267 0.161 0.635 sum -1.614 2.841 0.189 3.273 Atomic orbital electron populations 1.86486 1.17572 1.81150 1.49669 1.24883 0.84623 1.10452 0.95539 0.94103 0.80985 0.76406 0.86778 1.20635 0.96196 0.95655 0.99468 1.21735 0.97909 1.02764 0.96901 1.19835 0.98001 1.04844 1.01608 1.17308 0.80690 0.80104 0.83512 1.90760 1.79457 1.36642 1.35916 1.45841 1.20933 1.38884 1.31943 1.20966 0.86718 0.95082 0.92915 0.89340 1.21775 0.97679 0.96600 1.00206 1.21454 0.95711 0.98580 0.98990 1.21198 0.94205 0.95975 0.99431 0.90361 1.22237 0.89324 0.91806 0.96554 1.86477 1.36154 1.64957 1.50301 1.21483 0.96801 0.96916 0.99306 1.21940 0.96232 0.99469 0.99114 1.20385 0.91203 0.97647 0.90492 1.20508 0.99384 0.93560 0.95818 1.21731 0.95895 0.97948 1.01167 1.21937 0.99190 0.99004 0.97478 1.22293 0.82631 0.99030 0.98198 1.43875 1.17476 1.27077 1.21805 0.77270 0.86668 1.17748 1.17681 0.83606 0.76792 0.90924 0.91272 0.91298 0.91172 0.93568 0.93672 0.77334 0.91881 0.90930 0.91896 0.91295 0.88245 0.89332 0.90207 0.91399 0.90593 0.89366 0.87556 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.81 10.28 -35.23 -0.36 0.44 16 2 C -0.04 0.05 3.00 36.01 0.11 0.15 16 3 Si 0.72 -1.45 31.29 -169.99 -5.32 -6.77 16 4 C -0.01 -0.01 6.15 -81.87 -0.50 -0.51 16 5 C -0.17 -0.17 9.09 -37.47 -0.34 -0.51 16 6 C -0.23 -0.71 6.28 -103.50 -0.65 -1.36 16 7 C 0.59 2.42 7.77 -12.59 -0.10 2.33 16 8 O -0.55 -3.83 15.00 5.26 0.08 -3.75 16 9 N -0.73 -1.01 5.07 -54.93 -0.28 -1.29 16 10 C 0.15 0.16 2.45 -67.93 -0.17 0.00 16 11 H 0.09 0.26 7.58 -51.93 -0.39 -0.14 16 12 C -0.12 0.13 5.39 -26.73 -0.14 -0.01 16 13 C -0.11 0.13 5.20 -26.73 -0.14 -0.01 16 14 C -0.09 -0.01 2.43 -90.62 -0.22 -0.23 16 15 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 16 C 0.08 -0.01 6.43 37.16 0.24 0.23 16 17 O -0.57 -0.67 13.19 -35.23 -0.46 -1.14 16 18 C -0.11 -0.14 5.10 -26.71 -0.14 -0.28 16 19 C -0.13 -0.22 5.50 -26.71 -0.15 -0.37 16 20 C 0.12 0.30 6.57 -81.63 -0.54 -0.24 16 21 C -0.06 -0.08 5.32 -27.53 -0.15 -0.23 16 22 C -0.13 0.10 5.98 -26.44 -0.16 -0.06 16 23 C -0.14 0.27 5.92 -26.58 -0.16 0.12 16 24 C 0.10 -0.12 6.22 -3.69 -0.02 -0.14 16 25 N -0.43 -0.37 3.11 -107.37 -0.33 -0.71 16 26 H 0.38 -1.83 8.27 45.56 0.38 -1.46 16 27 H 0.12 -0.05 7.96 -51.93 -0.41 -0.46 16 28 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 29 H -0.25 0.04 6.77 56.52 0.38 0.43 16 30 H 0.15 -0.11 6.30 -52.49 -0.33 -0.44 16 31 H 0.40 -0.27 7.73 -40.82 -0.32 -0.59 16 32 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 33 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 34 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 35 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 36 H 0.05 -0.03 8.14 -51.92 -0.42 -0.46 16 37 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 38 H 0.38 -1.12 9.12 45.56 0.42 -0.70 16 39 H 0.06 0.10 8.14 -51.93 -0.42 -0.33 16 40 H 0.07 0.19 7.82 -51.93 -0.41 -0.22 16 41 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 42 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.10 0.30 7.40 -51.93 -0.38 -0.09 16 44 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 45 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 46 H 0.07 -0.01 8.12 -51.93 -0.42 -0.44 16 47 H 0.08 -0.14 8.11 -51.93 -0.42 -0.56 16 48 H 0.09 -0.29 8.14 -51.93 -0.42 -0.71 16 49 H 0.11 -0.26 5.67 -51.93 -0.29 -0.55 16 50 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 LS Contribution 384.69 15.07 5.80 5.80 Total: 0.00 -8.04 384.69 -11.83 -19.86 By element: Atomic # 1 Polarization: -3.59 SS G_CDS: -7.72 Total: -11.31 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -3.22 Total: -1.14 kcal Atomic # 7 Polarization: -1.38 SS G_CDS: -0.61 Total: -1.99 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.75 Total: -4.44 kcal Atomic # 14 Polarization: -1.45 SS G_CDS: -5.32 Total: -6.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -8.04 -11.83 -19.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_16915396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.207 kcal (2) G-P(sol) polarization free energy of solvation -8.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds