Wall clock time and date at job start Tue Mar 9 2021 12:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86301 * 109.47035 * 2 1 4 4 C 1.50691 * 109.47231 * 120.00147 * 2 1 3 5 5 C 1.38272 * 119.94350 * 64.99923 * 4 2 1 6 6 C 1.38145 * 120.05490 * 179.97438 * 5 4 2 7 7 C 1.38730 * 119.94630 * 359.97438 * 6 5 4 8 8 O 1.35901 * 120.06101 * 179.97438 * 7 6 5 9 9 C 1.42895 * 117.00221 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47036 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47184 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00025 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00035 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99846 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47161 * 35.00405 * 14 13 11 16 16 C 1.53004 * 109.47211 * 155.00269 * 14 13 11 17 17 C 1.52997 * 109.47280 * 179.97438 * 16 14 13 18 18 C 1.53002 * 109.47184 * 299.99824 * 17 16 14 19 19 H 1.08997 * 109.46779 * 300.00019 * 18 17 16 20 20 C 1.53002 * 109.46864 * 179.97438 * 18 17 16 21 21 O 1.42898 * 109.46801 * 175.00074 * 20 18 17 22 22 C 1.53000 * 109.46660 * 60.00219 * 18 17 16 23 23 C 1.52995 * 109.47348 * 275.00074 * 14 13 11 24 24 C 1.38735 * 119.88860 * 0.27900 * 7 6 5 25 25 C 1.38148 * 119.93988 * 359.46415 * 24 7 6 26 26 H 0.96696 * 113.99878 * 299.99884 * 1 2 3 27 27 H 1.09000 * 109.46678 * 240.00045 * 2 1 3 28 28 H 1.48502 * 110.00152 * 300.00121 * 3 2 1 29 29 H 1.48491 * 110.00105 * 61.32261 * 3 2 1 30 30 H 1.08001 * 119.97210 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.02745 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.46798 * 60.00452 * 9 8 7 33 33 H 1.08993 * 109.47318 * 299.99917 * 9 8 7 34 34 H 1.09001 * 109.46801 * 300.00369 * 10 9 8 35 35 H 1.09001 * 109.46998 * 59.99965 * 10 9 8 36 36 H 0.96998 * 119.99962 * 0.02562 * 13 11 10 37 37 H 1.09003 * 109.46989 * 300.00609 * 16 14 13 38 38 H 1.09004 * 109.46996 * 59.99465 * 16 14 13 39 39 H 1.09002 * 109.46984 * 60.00202 * 17 16 14 40 40 H 1.09003 * 109.46779 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.47111 * 295.00219 * 20 18 17 42 42 H 1.09004 * 109.46922 * 55.00123 * 20 18 17 43 43 H 0.96700 * 114.00126 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.47292 * 59.99755 * 22 18 17 45 45 H 1.09002 * 109.46918 * 180.02562 * 22 18 17 46 46 H 1.09002 * 109.47259 * 300.00271 * 23 14 13 47 47 H 1.09003 * 109.47231 * 60.00299 * 23 14 13 48 48 H 1.07999 * 120.03086 * 179.72007 * 24 7 6 49 49 H 1.08002 * 119.97208 * 180.27460 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6840 -2.0606 1.3971 6 6 2.1439 -2.7142 2.5239 7 6 2.8549 -2.0150 3.4883 8 8 3.3080 -2.6556 4.5980 9 6 4.0330 -1.8728 5.5485 10 6 4.4591 -2.7594 6.7204 11 6 5.2242 -1.9340 7.7225 12 8 5.4101 -0.7528 7.5196 13 7 5.7012 -2.5082 8.8447 14 6 6.4445 -1.7057 9.8191 15 1 6.0281 -0.6989 9.8538 16 6 6.3341 -2.3512 11.2019 17 6 7.1109 -1.5134 12.2194 18 6 8.5822 -1.4435 11.8054 19 1 8.9981 -2.4504 11.7706 20 6 9.3589 -0.6051 12.8227 21 8 10.7509 -0.6357 12.5014 22 6 8.6926 -0.7978 10.4227 23 6 7.9158 -1.6351 9.4054 24 6 3.0972 -0.6592 3.3213 25 6 2.6398 -0.0113 2.1901 26 1 -0.3933 0.4417 0.7650 27 1 1.7923 -0.5138 -0.8900 28 1 1.5614 2.4679 -1.2085 29 1 1.5880 2.4585 1.2242 30 1 1.1308 -2.6046 0.6458 31 1 1.9508 -3.7689 2.6535 32 1 3.3979 -1.0662 5.9148 33 1 4.9179 -1.4508 5.0722 34 1 3.5744 -3.1818 7.1968 35 1 5.0943 -3.5658 6.3537 36 1 5.5523 -3.4528 9.0071 37 1 5.2858 -2.4016 11.4966 38 1 6.7504 -3.3581 11.1671 39 1 6.6949 -0.5065 12.2543 40 1 7.0318 -1.9732 13.2046 41 1 9.0017 0.4243 12.7934 42 1 9.2074 -1.0140 13.8217 43 1 11.3055 -0.1237 13.1059 44 1 8.2766 0.2091 10.4575 45 1 9.7407 -0.7484 10.1275 46 1 8.3322 -2.6418 9.3706 47 1 7.9946 -1.1751 8.4203 48 1 3.6466 -0.1117 4.0728 49 1 2.8320 1.0431 2.0574 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_4549602.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:29 Heat of formation + Delta-G solvation = -147.721335 kcal Electronic energy + Delta-G solvation = -28135.046831 eV Core-core repulsion = 24028.009101 eV Total energy + Delta-G solvation = -4107.037730 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.182 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.47118 -41.05708 -39.69116 -39.14652 -37.48478 -37.28495 -35.24833 -33.46527 -32.12224 -31.80758 -31.63505 -30.94029 -26.93898 -26.19669 -25.22276 -23.83094 -23.50040 -22.32984 -22.02894 -21.47497 -20.76637 -19.52607 -18.46012 -18.24960 -17.69647 -17.53178 -17.46858 -16.97604 -16.43309 -16.29087 -16.10868 -15.86479 -15.84214 -15.58756 -15.13693 -14.87436 -14.76117 -14.57349 -14.43537 -14.30013 -14.08743 -13.94953 -13.51095 -13.48932 -13.18329 -13.01850 -12.88287 -12.78179 -12.28866 -12.27352 -12.13051 -12.07743 -11.79871 -11.61766 -11.59212 -11.45017 -11.30736 -10.97015 -10.82593 -10.60095 -10.10626 -10.04940 -9.23919 -4.93970 0.26749 0.29569 1.30792 1.52559 1.57244 1.70300 1.92775 2.48336 2.63759 3.30232 3.43489 3.54483 3.61705 3.70656 3.76338 3.81724 3.84962 3.89595 3.93881 4.01434 4.05224 4.24833 4.29324 4.32698 4.35069 4.40899 4.43771 4.48802 4.51940 4.55465 4.60698 4.66873 4.67771 4.70283 4.77662 4.83248 4.95363 4.96698 5.07459 5.08650 5.13713 5.16974 5.20324 5.27736 5.36578 5.42910 5.48143 5.50428 5.71033 6.30753 6.47795 6.48170 6.88107 7.16978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.074 4.074 3 Si 0.759 3.241 4 C -0.158 4.158 5 C -0.058 4.058 6 C -0.158 4.158 7 C 0.123 3.877 8 O -0.321 6.321 9 C 0.073 3.927 10 C -0.132 4.132 11 C 0.519 3.481 12 O -0.583 6.583 13 N -0.713 5.713 14 C 0.146 3.854 15 H 0.067 0.933 16 C -0.118 4.118 17 C -0.107 4.107 18 C -0.087 4.087 19 H 0.074 0.926 20 C 0.075 3.925 21 O -0.596 6.596 22 C -0.104 4.104 23 C -0.124 4.124 24 C -0.210 4.210 25 C -0.081 4.081 26 H 0.385 0.615 27 H 0.127 0.873 28 H -0.301 1.301 29 H -0.286 1.286 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.418 0.582 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.395 0.605 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.138 0.862 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 -3.475 5.496 6.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.183 4.183 3 Si 0.665 3.335 4 C -0.159 4.159 5 C -0.076 4.076 6 C -0.176 4.176 7 C 0.078 3.922 8 O -0.235 6.235 9 C -0.002 4.002 10 C -0.172 4.172 11 C 0.306 3.694 12 O -0.463 6.463 13 N -0.364 5.364 14 C 0.042 3.958 15 H 0.085 0.915 16 C -0.155 4.155 17 C -0.145 4.145 18 C -0.106 4.106 19 H 0.093 0.907 20 C -0.003 4.003 21 O -0.405 6.405 22 C -0.143 4.143 23 C -0.162 4.162 24 C -0.229 4.229 25 C -0.099 4.099 26 H 0.234 0.766 27 H 0.144 0.856 28 H -0.230 1.230 29 H -0.213 1.213 30 H 0.160 0.840 31 H 0.161 0.839 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.256 0.744 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.245 0.755 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.156 0.844 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.694 -2.712 4.409 5.446 hybrid contribution -0.762 0.296 1.004 1.295 sum 0.932 -2.416 5.413 6.001 Atomic orbital electron populations 1.86565 1.18618 1.80318 1.50142 1.25090 0.83290 1.11315 0.98633 0.94104 0.90571 0.72609 0.76212 1.20244 1.02605 0.95186 0.97851 1.21001 0.96530 0.93668 0.96401 1.20681 1.01715 1.01406 0.93845 1.19198 0.94560 0.91314 0.87137 1.85956 1.69180 1.38853 1.29472 1.22446 0.95752 0.93612 0.88418 1.21441 1.03001 0.99139 0.93608 1.20663 0.78564 0.87539 0.82635 1.90736 1.60131 1.18133 1.77347 1.45955 1.55670 1.14349 1.20465 1.20974 0.90927 0.95503 0.88435 0.91487 1.21745 1.01777 1.00070 0.91947 1.21455 0.92813 1.00986 0.99294 1.21189 0.95533 0.99743 0.94129 0.90730 1.22316 0.81009 0.99233 0.97698 1.86430 1.18933 1.76360 1.58756 1.21411 0.99816 0.98647 0.94393 1.21845 0.95044 1.00904 0.98437 1.21405 1.06571 0.93927 1.01007 1.21020 0.96059 1.00076 0.92742 0.76581 0.85559 1.22964 1.21286 0.84049 0.83949 0.91778 0.91584 0.85502 0.85553 0.74443 0.89946 0.89796 0.91515 0.89639 0.93264 0.92320 0.75529 0.92570 0.92382 0.90968 0.93618 0.84426 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.99 12.83 -148.98 -1.91 -3.90 16 2 C -0.07 -0.05 2.80 71.23 0.20 0.15 16 3 Si 0.76 -0.17 29.88 68.60 2.05 1.88 16 4 C -0.16 -0.29 5.35 -19.85 -0.11 -0.40 16 5 C -0.06 -0.13 9.68 22.26 0.22 0.09 16 6 C -0.16 -0.48 9.99 22.37 0.22 -0.26 16 7 C 0.12 0.55 6.69 22.51 0.15 0.70 16 8 O -0.32 -1.12 10.14 -92.44 -0.94 -2.06 16 9 C 0.07 0.08 4.03 71.98 0.29 0.37 16 10 C -0.13 0.55 6.07 29.85 0.18 0.73 16 11 C 0.52 0.49 7.79 87.66 0.68 1.17 16 12 O -0.58 -5.91 15.64 -3.04 -0.05 -5.95 16 13 N -0.71 2.78 5.08 -442.54 -2.25 0.53 16 14 C 0.15 -0.22 2.46 44.99 0.11 -0.11 16 15 H 0.07 0.24 7.58 -2.39 -0.02 0.22 16 16 C -0.12 0.75 5.39 30.59 0.16 0.91 16 17 C -0.11 0.58 5.20 30.59 0.16 0.74 16 18 C -0.09 0.17 2.43 -10.79 -0.03 0.14 16 19 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 20 C 0.07 -0.16 6.43 71.98 0.46 0.30 16 21 O -0.60 -0.63 13.19 -148.98 -1.97 -2.60 16 22 C -0.10 -0.14 5.10 30.58 0.16 0.02 16 23 C -0.12 -0.10 5.49 30.58 0.17 0.07 16 24 C -0.21 -0.72 9.04 22.37 0.20 -0.51 16 25 C -0.08 -0.15 8.66 22.25 0.19 0.04 16 26 H 0.39 -0.61 8.70 -74.06 -0.64 -1.26 16 27 H 0.13 -0.17 7.96 -2.39 -0.02 -0.19 16 28 H -0.30 -2.17 7.11 99.48 0.71 -1.47 16 29 H -0.29 -1.09 7.01 99.48 0.70 -0.40 16 30 H 0.14 -0.01 8.06 -2.91 -0.02 -0.03 16 31 H 0.14 0.06 8.06 -2.91 -0.02 0.04 16 32 H 0.06 0.16 7.61 -2.39 -0.02 0.15 16 33 H 0.07 0.16 7.63 -2.39 -0.02 0.14 16 34 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 35 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 36 H 0.42 -4.33 8.60 -92.71 -0.80 -5.12 16 37 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H 0.08 -0.70 8.14 -2.38 -0.02 -0.72 16 39 H 0.07 -0.31 8.14 -2.39 -0.02 -0.32 16 40 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H 0.05 -0.15 8.14 -2.39 -0.02 -0.16 16 42 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.40 -2.78 9.12 -74.06 -0.68 -3.46 16 44 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.06 0.26 7.82 -2.39 -0.02 0.24 16 46 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.04 0.25 8.14 -2.39 -0.02 0.23 16 48 H 0.14 0.27 6.30 -2.91 -0.02 0.25 16 49 H 0.14 -0.20 4.83 -2.91 -0.01 -0.21 16 Total: 0.00 -20.92 393.44 -2.75 -23.67 By element: Atomic # 1 Polarization: -14.62 SS G_CDS: -1.12 Total: -15.74 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 3.43 Total: 4.16 kcal Atomic # 7 Polarization: 2.78 SS G_CDS: -2.25 Total: 0.53 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -4.86 Total: -14.51 kcal Atomic # 14 Polarization: -0.17 SS G_CDS: 2.05 Total: 1.88 kcal Total: -20.92 -2.75 -23.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_4549602.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.047 kcal (2) G-P(sol) polarization free energy of solvation -20.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds