Wall clock time and date at job start Tue Mar 9 2021 12:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86305 * 109.47108 * 2 1 4 4 C 1.50698 * 109.47408 * 119.99774 * 2 1 3 5 5 C 1.38242 * 119.97777 * 245.00743 * 4 2 1 6 6 C 1.38282 * 120.11652 * 180.02562 * 5 4 2 7 7 C 1.38129 * 120.05466 * 359.97438 * 6 5 4 8 8 C 1.38757 * 119.94012 * 359.97438 * 7 6 5 9 9 O 1.35902 * 120.05313 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99916 * 0.02562 * 9 8 7 11 11 C 1.50703 * 109.47361 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.09004 * 109.47372 * 34.71852 * 14 13 11 16 16 C 1.52999 * 109.46963 * 154.72290 * 14 13 11 17 17 C 1.53003 * 109.47087 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47241 * 300.00042 * 17 16 14 19 19 H 1.08995 * 109.47096 * 299.99819 * 18 17 16 20 20 C 1.53003 * 109.47241 * 179.97438 * 18 17 16 21 21 O 1.42902 * 109.47043 * 174.99918 * 20 18 17 22 22 C 1.52999 * 109.47114 * 59.99975 * 18 17 16 23 23 C 1.52997 * 109.47036 * 274.72131 * 14 13 11 24 24 C 1.38169 * 119.96844 * 65.25599 * 4 2 1 25 25 H 0.96698 * 114.00672 * 299.99786 * 1 2 3 26 26 H 1.09001 * 109.47612 * 240.00061 * 2 1 3 27 27 H 1.48504 * 109.99984 * 300.00292 * 3 2 1 28 28 H 1.48506 * 109.99951 * 61.31806 * 3 2 1 29 29 H 1.08002 * 119.93738 * 359.97438 * 5 4 2 30 30 H 1.07997 * 119.97772 * 179.97438 * 6 5 4 31 31 H 1.08001 * 120.03038 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47421 * 59.99643 * 10 9 8 33 33 H 1.09002 * 109.47461 * 299.99906 * 10 9 8 34 34 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 35 35 H 1.08997 * 109.46923 * 299.99333 * 16 14 13 36 36 H 1.08995 * 109.47266 * 59.99845 * 16 14 13 37 37 H 1.09004 * 109.47044 * 59.99688 * 17 16 14 38 38 H 1.08997 * 109.47066 * 179.97438 * 17 16 14 39 39 H 1.09003 * 109.46854 * 294.99829 * 20 18 17 40 40 H 1.08996 * 109.47340 * 54.99780 * 20 18 17 41 41 H 0.96699 * 113.99897 * 179.97438 * 21 20 18 42 42 H 1.08995 * 109.47266 * 59.99948 * 22 18 17 43 43 H 1.09000 * 109.47204 * 180.02562 * 22 18 17 44 44 H 1.09009 * 109.47238 * 300.00198 * 23 14 13 45 45 H 1.08997 * 109.47293 * 60.00168 * 23 14 13 46 46 H 1.08001 * 120.02938 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.6386 -0.0116 2.1910 6 6 3.1014 -0.6607 3.3209 7 6 2.8574 -2.0094 3.4928 8 6 2.1469 -2.7127 2.5306 9 8 1.9060 -4.0398 2.6971 10 6 2.4132 -4.6469 3.8871 11 6 2.0514 -6.1098 3.8982 12 8 1.4207 -6.5855 2.9779 13 7 2.4277 -6.8893 4.9314 14 6 2.0811 -8.3127 4.9392 15 1 2.1087 -8.6990 3.9203 16 6 3.0866 -9.0776 5.8022 17 6 2.7243 -10.5641 5.8110 18 6 1.3181 -10.7429 6.3867 19 1 1.2907 -10.3564 7.4054 20 6 0.9556 -12.2294 6.3948 21 8 -0.3078 -12.4080 7.0383 22 6 0.3126 -9.9780 5.5236 23 6 0.6748 -8.4920 5.5146 24 6 1.6891 -2.0606 1.3951 25 1 -0.3934 0.4416 0.7650 26 1 1.7924 -0.5138 -0.8900 27 1 1.5614 2.4680 -1.2085 28 1 1.5878 2.4586 1.2243 29 1 2.8307 1.0428 2.0582 30 1 3.6541 -0.1128 4.0697 31 1 3.2194 -2.5160 4.3752 32 1 1.9772 -4.1585 4.7585 33 1 3.4976 -4.5403 3.9156 34 1 2.9317 -6.5087 5.6676 35 1 4.0884 -8.9499 5.3922 36 1 3.0589 -8.6913 6.8210 37 1 2.7517 -10.9507 4.7922 38 1 3.4409 -11.1090 6.4254 39 1 0.8960 -12.5944 5.3694 40 1 1.7206 -12.7870 6.9351 41 1 -0.6016 -13.3284 7.0794 42 1 0.3400 -10.3646 4.5049 43 1 -0.6891 -10.1051 5.9340 44 1 0.6471 -8.1056 6.5335 45 1 -0.0415 -7.9471 4.8998 46 1 1.1396 -2.6069 0.6427 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_4860298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:14 Heat of formation + Delta-G solvation = -139.356177 kcal Electronic energy + Delta-G solvation = -26563.093965 eV Core-core repulsion = 22611.956594 eV Total energy + Delta-G solvation = -3951.137371 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.64571 -40.93611 -39.71409 -38.93402 -37.50341 -37.29814 -35.32037 -32.51970 -32.13897 -31.80730 -31.24938 -29.09198 -26.87374 -25.98107 -23.84686 -23.69666 -22.86745 -22.03779 -21.59031 -20.83139 -19.36354 -18.63949 -18.16585 -17.88081 -17.47602 -17.32994 -17.08283 -16.80539 -16.26550 -16.18144 -15.84138 -15.61494 -15.45994 -15.05449 -14.99438 -14.74277 -14.57258 -14.15523 -14.03929 -13.96535 -13.66630 -13.40407 -13.19771 -13.04568 -12.97011 -12.62205 -12.30424 -12.14921 -12.11570 -12.01222 -11.64090 -11.58076 -11.46529 -11.32680 -10.97244 -10.83793 -10.66995 -10.18463 -9.95661 -9.30107 -4.91329 0.19469 0.38127 1.26812 1.40699 1.48124 1.60941 1.96174 2.56890 2.65331 3.28883 3.39821 3.49360 3.60326 3.65651 3.74566 3.82658 3.93541 3.98082 4.00187 4.06334 4.11811 4.23806 4.27876 4.32183 4.35602 4.39000 4.47270 4.50376 4.52820 4.58256 4.64580 4.69597 4.81404 4.93329 4.97203 5.04612 5.06542 5.12553 5.18702 5.23516 5.33991 5.36075 5.38233 5.43914 5.47153 5.68743 6.26267 6.45331 6.45679 6.87347 7.10711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.096 4.096 3 Si 0.787 3.213 4 C -0.081 4.081 5 C -0.158 4.158 6 C -0.070 4.070 7 C -0.201 4.201 8 C 0.113 3.887 9 O -0.324 6.324 10 C 0.039 3.961 11 C 0.511 3.489 12 O -0.574 6.574 13 N -0.705 5.705 14 C 0.147 3.853 15 H 0.064 0.936 16 C -0.116 4.116 17 C -0.108 4.108 18 C -0.087 4.087 19 H 0.077 0.923 20 C 0.075 3.925 21 O -0.597 6.597 22 C -0.105 4.105 23 C -0.125 4.125 24 C -0.150 4.150 25 H 0.386 0.614 26 H 0.118 0.882 27 H -0.305 1.305 28 H -0.274 1.274 29 H 0.148 0.852 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.421 0.579 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.395 0.605 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.040 0.960 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.534 0.297 7.700 11.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.203 4.203 3 Si 0.691 3.309 4 C -0.082 4.082 5 C -0.176 4.176 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.068 3.932 9 O -0.238 6.238 10 C -0.039 4.039 11 C 0.297 3.703 12 O -0.453 6.453 13 N -0.359 5.359 14 C 0.043 3.957 15 H 0.082 0.918 16 C -0.153 4.153 17 C -0.146 4.146 18 C -0.105 4.105 19 H 0.095 0.905 20 C -0.003 4.003 21 O -0.405 6.405 22 C -0.143 4.143 23 C -0.163 4.163 24 C -0.169 4.169 25 H 0.235 0.765 26 H 0.136 0.864 27 H -0.234 1.234 28 H -0.201 1.201 29 H 0.166 0.834 30 H 0.181 0.819 31 H 0.178 0.822 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.260 0.740 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.245 0.755 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.058 0.942 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.913 0.964 6.436 10.245 hybrid contribution -1.467 -0.939 0.397 1.786 sum 6.446 0.025 6.833 9.393 Atomic orbital electron populations 1.86583 1.18688 1.80589 1.50103 1.25487 0.83451 1.12999 0.98403 0.93838 0.89953 0.70621 0.76456 1.20120 0.98190 0.92875 0.96984 1.21253 1.00600 1.00876 0.94851 1.21334 0.96811 0.93472 0.97144 1.21642 1.03428 0.96384 1.00523 1.19215 0.96332 0.82312 0.95368 1.86127 1.74651 1.20896 1.42100 1.22731 1.02669 0.89987 0.88514 1.20609 0.78890 0.88698 0.82098 1.90766 1.40876 1.75921 1.37691 1.45766 1.57486 1.09612 1.23045 1.21003 0.94719 0.79801 1.00197 0.91803 1.21744 0.98245 0.94703 1.00639 1.21465 0.95169 0.96044 1.01920 1.21188 0.95158 0.94020 1.00151 0.90460 1.22322 0.85138 0.96447 0.96378 1.86431 1.38305 1.34019 1.81754 1.21417 0.99248 0.94054 0.99620 1.21856 0.96287 0.96823 1.01356 1.20312 1.04335 0.94634 0.97615 0.76452 0.86414 1.23380 1.20068 0.83432 0.81924 0.82154 0.85880 0.85415 0.74048 0.89660 0.89343 0.91670 0.89316 0.93410 0.92126 0.75533 0.92803 0.92396 0.90524 0.94156 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.35 12.84 -148.98 -1.91 -5.26 16 2 C -0.10 -0.21 2.80 71.24 0.20 -0.01 16 3 Si 0.79 -1.33 29.88 68.60 2.05 0.72 16 4 C -0.08 -0.22 5.35 -19.88 -0.11 -0.32 16 5 C -0.16 0.28 8.67 22.28 0.19 0.48 16 6 C -0.07 0.28 10.04 22.25 0.22 0.51 16 7 C -0.20 0.46 9.04 22.37 0.20 0.67 16 8 C 0.11 0.56 6.69 22.51 0.15 0.71 16 9 O -0.32 -2.60 9.67 -73.41 -0.71 -3.31 16 10 C 0.04 -0.08 5.22 71.24 0.37 0.30 16 11 C 0.51 2.16 7.87 87.66 0.69 2.85 16 12 O -0.57 -9.51 16.16 16.00 0.26 -9.25 16 13 N -0.71 2.28 5.08 -442.53 -2.25 0.03 16 14 C 0.15 -0.08 2.46 44.99 0.11 0.03 16 15 H 0.06 0.35 7.57 -2.39 -0.02 0.33 16 16 C -0.12 0.76 5.39 30.59 0.16 0.92 16 17 C -0.11 0.57 5.20 30.59 0.16 0.73 16 18 C -0.09 0.14 2.43 -10.79 -0.03 0.11 16 19 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 20 C 0.07 -0.13 6.43 71.98 0.46 0.34 16 21 O -0.60 -0.93 13.19 -148.98 -1.97 -2.90 16 22 C -0.11 -0.26 5.10 30.58 0.16 -0.10 16 23 C -0.12 -0.26 5.49 30.58 0.17 -0.09 16 24 C -0.15 -1.09 9.63 22.37 0.22 -0.87 16 25 H 0.39 -0.08 8.70 -74.06 -0.64 -0.72 16 26 H 0.12 0.20 7.96 -2.39 -0.02 0.18 16 27 H -0.31 -1.94 7.11 99.48 0.71 -1.23 16 28 H -0.27 -0.19 7.01 99.48 0.70 0.51 16 29 H 0.15 -0.89 4.84 -2.91 -0.01 -0.90 16 30 H 0.16 -1.69 8.06 -2.91 -0.02 -1.71 16 31 H 0.16 -1.50 6.30 -2.91 -0.02 -1.52 16 32 H 0.12 -1.02 7.66 -2.39 -0.02 -1.03 16 33 H 0.13 -1.15 7.66 -2.39 -0.02 -1.17 16 34 H 0.42 -4.84 8.60 -92.71 -0.80 -5.64 16 35 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 36 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 37 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.40 -2.58 9.12 -74.06 -0.68 -3.26 16 42 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.06 0.33 7.82 -2.39 -0.02 0.31 16 44 H 0.08 -0.03 8.14 -2.38 -0.02 -0.05 16 45 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.11 1.20 8.06 -2.91 -0.02 1.18 16 Total: 0.00 -28.75 372.50 -2.27 -31.02 By element: Atomic # 1 Polarization: -16.23 SS G_CDS: -1.08 Total: -17.31 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 3.33 Total: 6.25 kcal Atomic # 7 Polarization: 2.28 SS G_CDS: -2.25 Total: 0.03 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -4.33 Total: -20.72 kcal Atomic # 14 Polarization: -1.33 SS G_CDS: 2.05 Total: 0.72 kcal Total: -28.75 -2.27 -31.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_4860298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.332 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds