Wall clock time and date at job start Tue Mar 9 2021 12:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33824 * 122.44258 * 2 1 4 4 C 1.50693 * 124.52544 * 359.97438 * 3 2 1 5 5 O 1.42903 * 109.47296 * 30.00036 * 4 3 2 6 6 Si 1.86303 * 109.47284 * 149.99994 * 4 3 2 7 7 S 1.70621 * 110.94992 * 179.74482 * 3 2 1 8 8 C 1.75829 * 91.56418 * 0.35461 * 7 3 2 9 9 C 1.46585 * 125.46082 * 179.91584 * 8 7 3 10 10 O 1.21698 * 119.99967 * 179.69507 * 9 8 7 11 11 N 1.34778 * 119.99691 * 359.69099 * 9 8 7 12 12 C 1.46499 * 119.99771 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.47397 * 325.00275 * 12 11 9 14 14 C 1.53002 * 109.46799 * 85.00174 * 12 11 9 15 15 C 1.52997 * 109.46817 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47452 * 300.00239 * 15 14 12 17 17 H 1.09002 * 109.46935 * 300.00125 * 16 15 14 18 18 C 1.53002 * 109.47197 * 180.02562 * 16 15 14 19 19 O 1.42901 * 109.46914 * 174.99854 * 18 16 15 20 20 C 1.52999 * 109.47159 * 59.99536 * 16 15 14 21 21 C 1.52997 * 109.47317 * 300.00546 * 20 16 15 22 22 C 1.36655 * 109.08221 * 359.64778 * 8 7 3 23 23 H 1.08993 * 109.47705 * 270.00246 * 1 2 3 24 24 H 1.09000 * 109.47335 * 30.00679 * 1 2 3 25 25 H 1.09006 * 109.47032 * 150.00175 * 1 2 3 26 26 H 1.08999 * 109.47365 * 269.99863 * 4 3 2 27 27 H 0.96700 * 113.99698 * 59.99702 * 5 4 3 28 28 H 1.48501 * 109.99741 * 58.67935 * 6 4 3 29 29 H 1.48500 * 110.00275 * 179.97438 * 6 4 3 30 30 H 0.97006 * 119.99662 * 0.02562 * 11 9 8 31 31 H 1.08993 * 109.47662 * 299.99952 * 14 12 11 32 32 H 1.09002 * 109.47075 * 60.00457 * 14 12 11 33 33 H 1.09002 * 109.47153 * 60.00231 * 15 14 12 34 34 H 1.09001 * 109.47289 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.46791 * 294.99945 * 18 16 15 36 36 H 1.08998 * 109.47254 * 54.99840 * 18 16 15 37 37 H 0.96697 * 113.99597 * 179.97438 * 19 18 16 38 38 H 1.08996 * 109.46929 * 179.97438 * 20 16 15 39 39 H 1.09002 * 109.46716 * 60.00455 * 20 16 15 40 40 H 1.09002 * 109.47153 * 299.99641 * 21 20 16 41 41 H 1.09001 * 109.46832 * 179.97438 * 21 20 16 42 42 H 1.08001 * 123.35123 * 180.28460 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1294 0.0000 4 6 1.6353 2.5162 -0.0006 5 8 0.3749 2.4983 0.6726 6 14 2.7919 3.6831 0.8778 7 16 3.8969 0.7894 0.0071 8 6 3.5938 -0.9425 -0.0008 9 6 4.6232 -1.9860 -0.0012 10 8 4.3003 -3.1594 -0.0014 11 7 5.9274 -1.6460 -0.0016 12 6 6.9563 -2.6888 -0.0026 13 1 6.6125 -3.5390 0.5864 14 6 7.2244 -3.1393 -1.4400 15 6 8.2993 -4.2280 -1.4411 16 6 9.5883 -3.6727 -0.8318 17 1 9.9318 -2.8224 -1.4210 18 6 10.6635 -4.7613 -0.8336 19 8 11.8992 -4.2109 -0.3731 20 6 9.3202 -3.2222 0.6055 21 6 8.2452 -2.1335 0.6066 22 6 2.2446 -1.1599 -0.0004 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.4936 2.8504 -1.0283 27 1 0.4254 2.2100 1.5943 28 1 4.1164 3.6867 0.2062 29 1 2.2222 5.0544 0.8836 30 1 6.1847 -0.7106 -0.0011 31 1 6.3061 -3.5345 -1.8742 32 1 7.5683 -2.2891 -2.0290 33 1 7.9559 -5.0783 -0.8520 34 1 8.4907 -4.5486 -2.4652 35 1 10.3591 -5.5736 -0.1735 36 1 10.7911 -5.1443 -1.8460 37 1 12.6276 -4.8465 -0.3477 38 1 10.2386 -2.8271 1.0397 39 1 8.9767 -4.0725 1.1947 40 1 8.5887 -1.2831 0.0175 41 1 8.0539 -1.8129 1.6307 42 1 1.8020 -2.1451 -0.0001 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:50 Heat of formation + Delta-G solvation = -102.969272 kcal Electronic energy + Delta-G solvation = -23661.965721 eV Core-core repulsion = 20120.240643 eV Total energy + Delta-G solvation = -3541.725078 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.123 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30455 -40.11257 -39.43070 -37.52870 -37.21255 -35.32843 -32.48449 -31.83185 -31.11350 -30.21023 -27.09926 -25.64104 -24.36207 -23.80980 -22.29640 -21.74687 -20.93555 -20.15045 -19.35432 -18.20848 -17.91950 -17.35259 -17.07220 -16.47032 -16.27625 -16.11509 -15.91084 -15.62003 -15.26761 -15.03462 -14.79695 -14.56017 -14.42439 -14.04524 -13.94773 -13.53032 -13.40897 -13.18186 -13.14403 -13.07099 -12.92678 -12.44660 -12.35012 -12.22217 -12.15387 -11.78886 -11.64540 -11.49496 -11.32217 -11.14159 -10.83027 -10.67508 -10.25477 -9.69456 -9.43801 -5.07089 -0.68955 0.25617 0.68228 1.10216 1.31636 1.53886 1.89135 1.94601 2.04634 3.28932 3.36182 3.53820 3.63102 3.64504 3.76928 3.93395 4.03991 4.08752 4.24063 4.25611 4.31199 4.38421 4.44026 4.46775 4.50475 4.57178 4.59537 4.68584 4.79350 4.81598 4.90581 4.93477 5.01235 5.03688 5.05143 5.11930 5.19132 5.33857 5.36139 5.38652 5.46377 5.47641 6.30569 6.66434 6.88948 6.98404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.100 4.100 3 C -0.234 4.234 4 C -0.031 4.031 5 O -0.539 6.539 6 Si 0.729 3.271 7 S 0.233 5.767 8 C -0.283 4.283 9 C 0.590 3.410 10 O -0.569 6.569 11 N -0.712 5.712 12 C 0.147 3.853 13 H 0.073 0.927 14 C -0.124 4.124 15 C -0.106 4.106 16 C -0.088 4.088 17 H 0.074 0.926 18 C 0.077 3.923 19 O -0.593 6.593 20 C -0.103 4.103 21 C -0.120 4.120 22 C -0.055 4.055 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.122 0.878 27 H 0.396 0.604 28 H -0.254 1.254 29 H -0.273 1.273 30 H 0.409 0.591 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.396 0.604 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.454 2.175 2.024 3.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.354 4.354 4 C -0.143 4.143 5 O -0.347 6.347 6 Si 0.631 3.369 7 S 0.502 5.498 8 C -0.403 4.403 9 C 0.377 3.623 10 O -0.450 6.450 11 N -0.363 5.363 12 C 0.043 3.957 13 H 0.092 0.908 14 C -0.163 4.163 15 C -0.144 4.144 16 C -0.106 4.106 17 H 0.092 0.908 18 C -0.001 4.001 19 O -0.401 6.401 20 C -0.142 4.142 21 C -0.158 4.158 22 C -0.089 4.089 23 H 0.103 0.897 24 H 0.099 0.901 25 H 0.078 0.922 26 H 0.139 0.861 27 H 0.246 0.754 28 H -0.180 1.180 29 H -0.199 1.199 30 H 0.245 0.755 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.245 0.755 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.516 3.714 1.451 5.316 hybrid contribution -1.203 -1.505 -0.755 2.069 sum 2.313 2.209 0.696 3.273 Atomic orbital electron populations 1.20628 0.87825 1.02980 1.03592 1.18775 0.99011 0.90212 1.03182 1.24685 0.98676 1.01259 1.10738 1.24594 0.92618 0.94755 1.02326 1.86508 1.27533 1.90080 1.30580 0.93977 0.75939 0.77799 0.89159 1.82831 1.02750 0.96048 1.68160 1.24567 0.97773 0.98262 1.19715 1.17193 0.82476 0.87130 0.75478 1.90822 1.82316 1.19916 1.51931 1.45906 1.04710 1.11002 1.74664 1.21077 0.87247 0.90380 0.97007 0.90841 1.21846 0.98707 0.99483 0.96247 1.21427 0.93435 0.97810 1.01700 1.21170 0.93802 0.98374 0.97257 0.90770 1.22263 0.84113 0.95322 0.98401 1.86415 1.21304 1.42872 1.89555 1.21425 0.98298 0.98283 0.96146 1.21783 0.92883 0.99252 1.01854 1.20811 0.91238 1.00374 0.96493 0.89651 0.90135 0.92174 0.86061 0.75368 1.18011 1.19867 0.75501 0.93096 0.90797 0.91587 0.90664 0.93007 0.92898 0.75486 0.90997 0.91883 0.90142 0.90344 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.13 8.67 71.24 0.62 0.75 16 2 C -0.10 -0.09 5.75 -21.05 -0.12 -0.21 16 3 C -0.23 0.28 5.54 24.68 0.14 0.42 16 4 C -0.03 0.10 2.76 71.23 0.20 0.30 16 5 O -0.54 1.97 9.85 -148.98 -1.47 0.51 16 6 Si 0.73 -3.39 31.31 68.60 2.15 -1.24 16 7 S 0.23 -0.40 19.78 -56.49 -1.12 -1.52 16 8 C -0.28 -1.16 6.45 24.08 0.16 -1.00 16 9 C 0.59 4.41 7.75 86.42 0.67 5.08 16 10 O -0.57 -8.74 16.50 -4.34 -0.07 -8.81 16 11 N -0.71 -1.07 5.07 -446.60 -2.27 -3.34 16 12 C 0.15 0.19 2.46 44.99 0.11 0.30 16 13 H 0.07 0.41 7.57 -2.39 -0.02 0.39 16 14 C -0.12 -0.15 5.49 30.59 0.17 0.01 16 15 C -0.11 0.09 5.20 30.60 0.16 0.25 16 16 C -0.09 0.09 2.43 -10.79 -0.03 0.07 16 17 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 18 C 0.08 -0.12 6.43 71.98 0.46 0.34 16 19 O -0.59 -0.25 13.20 -148.98 -1.97 -2.21 16 20 C -0.10 0.11 5.10 30.59 0.16 0.27 16 21 C -0.12 0.30 5.39 30.59 0.16 0.47 16 22 C -0.06 -0.24 9.80 21.72 0.21 -0.02 16 23 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 24 H 0.08 -0.02 6.41 -2.39 -0.02 -0.03 16 25 H 0.06 -0.06 8.13 -2.38 -0.02 -0.07 16 26 H 0.12 -0.33 7.96 -2.39 -0.02 -0.35 16 27 H 0.40 -4.21 8.66 -74.06 -0.64 -4.85 16 28 H -0.25 0.43 7.09 99.48 0.71 1.14 16 29 H -0.27 -0.54 7.11 99.48 0.71 0.17 16 30 H 0.41 -1.40 7.72 -92.70 -0.72 -2.11 16 31 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.05 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.40 -2.98 9.12 -74.06 -0.68 -3.65 16 38 H 0.07 0.04 7.82 -2.39 -0.02 0.02 16 39 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 41 H 0.08 -0.27 8.14 -2.39 -0.02 -0.28 16 42 H 0.15 0.77 8.06 -2.91 -0.02 0.75 16 Total: 0.00 -16.99 350.15 -2.62 -19.61 By element: Atomic # 1 Polarization: -9.06 SS G_CDS: -0.95 Total: -10.01 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 3.06 Total: 7.01 kcal Atomic # 7 Polarization: -1.07 SS G_CDS: -2.27 Total: -3.34 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -3.51 Total: -10.51 kcal Atomic # 14 Polarization: -3.39 SS G_CDS: 2.15 Total: -1.24 kcal Atomic # 16 Polarization: -0.40 SS G_CDS: -1.12 Total: -1.52 kcal Total: -16.99 -2.62 -19.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.358 kcal (2) G-P(sol) polarization free energy of solvation -16.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds