Wall clock time and date at job start Tue Mar 9 2021 12:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86299 * 109.47329 * 2 1 4 4 C 1.50698 * 109.47278 * 239.99601 * 2 1 3 5 5 C 1.34242 * 126.49676 * 105.02532 * 4 2 1 6 6 N 1.36837 * 109.93857 * 179.97438 * 5 4 2 7 7 C 1.46491 * 125.06218 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46957 * 265.02370 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 H 1.09001 * 109.46948 * 35.00281 * 11 10 8 13 13 C 1.52999 * 109.47481 * 154.99940 * 11 10 8 14 14 C 1.52995 * 109.47507 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47319 * 300.00556 * 14 13 11 16 16 H 1.08993 * 109.47268 * 299.99783 * 15 14 13 17 17 C 1.53000 * 109.47350 * 179.97438 * 15 14 13 18 18 O 1.42895 * 109.47677 * 175.00001 * 17 15 14 19 19 C 1.53005 * 109.47302 * 59.99629 * 15 14 13 20 20 C 1.52997 * 109.47288 * 275.00460 * 11 10 8 21 21 C 1.37701 * 109.87015 * 0.26772 * 6 5 4 22 22 C 1.39078 * 133.50747 * 179.73491 * 21 6 5 23 23 C 1.37792 * 119.77773 * 180.02562 * 22 21 6 24 24 C 1.38788 * 120.66391 * 359.97438 * 23 22 21 25 25 C 1.36674 * 120.52811 * 359.58230 * 24 23 22 26 26 C 1.39589 * 119.76191 * 0.65626 * 25 24 23 27 27 H 0.96705 * 113.99943 * 60.00349 * 1 2 3 28 28 H 1.09005 * 109.47091 * 119.99822 * 2 1 3 29 29 H 1.48502 * 110.00059 * 298.67945 * 3 2 1 30 30 H 1.48499 * 109.99787 * 59.99665 * 3 2 1 31 31 H 1.07995 * 125.03206 * 0.02562 * 5 4 2 32 32 H 1.09004 * 109.47166 * 145.02636 * 7 6 5 33 33 H 1.08994 * 109.47507 * 25.02342 * 7 6 5 34 34 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 35 35 H 1.09000 * 109.47556 * 300.00768 * 13 11 10 36 36 H 1.09007 * 109.46426 * 60.00536 * 13 11 10 37 37 H 1.09001 * 109.46891 * 60.00360 * 14 13 11 38 38 H 1.09000 * 109.47220 * 179.97438 * 14 13 11 39 39 H 1.08997 * 109.47090 * 295.00123 * 17 15 14 40 40 H 1.09005 * 109.47155 * 54.99754 * 17 15 14 41 41 H 0.96702 * 114.00381 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.47005 * 60.00136 * 19 15 14 43 43 H 1.09000 * 109.46851 * 179.97438 * 19 15 14 44 44 H 1.08993 * 109.47268 * 299.99834 * 20 11 10 45 45 H 1.09006 * 109.47495 * 60.00048 * 20 11 10 46 46 H 1.08006 * 120.11400 * 0.02562 * 22 21 6 47 47 H 1.07996 * 119.66778 * 179.97438 * 23 22 21 48 48 H 1.07993 * 119.73662 * 180.02562 * 24 23 22 49 49 H 1.07998 * 120.11345 * 179.91657 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4613 -0.1377 -2.3227 6 7 2.8037 -1.0991 -3.2342 7 6 3.4095 -0.8405 -4.5427 8 6 2.3305 -0.7832 -5.5932 9 8 1.1697 -0.9421 -5.2797 10 7 2.6548 -0.5492 -6.8803 11 6 1.6054 -0.4874 -7.9006 12 1 0.7081 -0.0406 -7.4723 13 6 2.0872 0.3639 -9.0770 14 6 0.9915 0.4279 -10.1429 15 6 0.6736 -0.9862 -10.6330 16 1 1.5710 -1.4327 -11.0610 17 6 -0.4226 -0.9223 -11.6985 18 8 -0.6380 -2.2272 -12.2394 19 6 0.1917 -1.8375 -9.4566 20 6 1.2869 -1.9013 -8.3909 21 6 2.4891 -2.3454 -2.7404 22 6 2.6178 -3.6354 -3.2442 23 6 2.1988 -4.7096 -2.4898 24 6 1.6491 -4.5183 -1.2298 25 6 1.5216 -3.2600 -0.7118 26 6 1.9349 -2.1571 -1.4609 27 1 -0.3933 0.4417 -0.7651 28 1 1.7923 -0.5138 0.8900 29 1 1.5880 2.4585 -1.2243 30 1 1.5614 2.4678 1.2085 31 1 2.5979 0.9246 -2.4612 32 1 4.1091 -1.6409 -4.7838 33 1 3.9410 0.1106 -4.5155 34 1 3.5832 -0.4218 -7.1311 35 1 2.3142 1.3712 -8.7278 36 1 2.9845 -0.0830 -9.5053 37 1 0.0940 0.8744 -9.7149 38 1 1.3347 1.0347 -10.9808 39 1 -1.3462 -0.5587 -11.2481 40 1 -0.1157 -0.2447 -12.4953 41 1 -1.3212 -2.2620 -12.9228 42 1 -0.7059 -1.3909 -9.0286 43 1 -0.0353 -2.8447 -9.8059 44 1 2.1841 -2.3481 -8.8191 45 1 0.9435 -2.5078 -7.5528 46 1 3.0447 -3.7946 -4.2234 47 1 2.2992 -5.7105 -2.8828 48 1 1.3260 -5.3710 -0.6512 49 1 1.0916 -3.1188 0.2688 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_7207542_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:07 Heat of formation + Delta-G solvation = -59.935702 kcal Electronic energy + Delta-G solvation = -30449.183611 eV Core-core repulsion = 26342.756551 eV Total energy + Delta-G solvation = -4106.427060 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.47079 -41.08647 -39.61969 -38.01538 -37.69436 -37.37565 -35.30175 -34.05022 -31.94917 -31.85026 -31.00920 -30.10606 -28.85986 -26.43111 -25.43315 -23.92876 -23.62486 -22.77955 -22.16626 -21.63531 -20.95996 -20.55400 -18.72373 -18.46279 -18.18233 -17.76476 -17.40942 -16.92506 -16.53181 -16.28834 -16.03243 -15.99726 -15.88358 -15.48037 -15.29903 -15.19117 -14.70256 -14.64278 -14.56355 -14.38715 -14.05316 -13.98529 -13.80874 -13.48292 -13.31539 -13.18530 -13.10406 -12.59158 -12.43669 -12.34807 -12.25611 -12.25251 -11.86871 -11.71621 -11.61476 -11.54883 -11.38205 -11.03016 -10.91918 -10.40258 -10.33436 -10.17988 -9.00702 -8.51443 -4.90324 0.29474 0.81507 1.37848 1.41564 1.45356 1.63731 1.73542 2.03636 2.13346 3.10862 3.13479 3.42747 3.50061 3.52902 3.60767 3.67270 3.75157 3.83071 3.84982 3.87802 3.88573 4.09486 4.13683 4.24936 4.31835 4.33248 4.35649 4.39162 4.42385 4.48421 4.52657 4.60570 4.69018 4.73934 4.81988 4.82322 4.90054 4.92276 4.97253 5.01146 5.02966 5.17631 5.26991 5.28024 5.33607 5.40869 5.66544 5.82763 5.88249 5.91736 6.17850 6.33748 6.38875 6.62402 6.62836 7.03360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.037 4.037 3 Si 0.683 3.317 4 C -0.193 4.193 5 C 0.066 3.934 6 N -0.465 5.465 7 C 0.091 3.909 8 C 0.491 3.509 9 O -0.514 6.514 10 N -0.726 5.726 11 C 0.146 3.854 12 H 0.088 0.912 13 C -0.124 4.124 14 C -0.110 4.110 15 C -0.089 4.089 16 H 0.079 0.921 17 C 0.078 3.922 18 O -0.573 6.573 19 C -0.108 4.108 20 C -0.128 4.128 21 C 0.109 3.891 22 C -0.127 4.127 23 C -0.096 4.096 24 C -0.146 4.146 25 C -0.065 4.065 26 C -0.086 4.086 27 H 0.374 0.626 28 H 0.114 0.886 29 H -0.261 1.261 30 H -0.257 1.257 31 H 0.168 0.832 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.401 0.599 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.381 0.619 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.114 0.886 47 H 0.125 0.875 48 H 0.123 0.877 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.761 2.850 -5.020 8.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.147 4.147 3 Si 0.584 3.416 4 C -0.201 4.201 5 C -0.059 4.059 6 N -0.148 5.148 7 C -0.035 4.035 8 C 0.274 3.726 9 O -0.387 6.387 10 N -0.378 5.378 11 C 0.041 3.959 12 H 0.106 0.894 13 C -0.162 4.162 14 C -0.148 4.148 15 C -0.108 4.108 16 H 0.098 0.902 17 C 0.001 3.999 18 O -0.379 6.379 19 C -0.146 4.146 20 C -0.167 4.167 21 C 0.005 3.995 22 C -0.148 4.148 23 C -0.116 4.116 24 C -0.165 4.165 25 C -0.084 4.084 26 C -0.090 4.090 27 H 0.222 0.778 28 H 0.132 0.868 29 H -0.186 1.186 30 H -0.181 1.181 31 H 0.185 0.815 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.235 0.765 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.228 0.772 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.132 0.868 47 H 0.143 0.857 48 H 0.141 0.859 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.395 3.210 -4.075 7.484 hybrid contribution -1.064 0.075 -1.354 1.723 sum 4.331 3.285 -5.428 7.682 Atomic orbital electron populations 1.86593 1.18096 1.79942 1.49025 1.24289 0.83387 1.09748 0.97309 0.95348 0.91443 0.74525 0.80310 1.20577 1.09495 0.92348 0.97693 1.21577 1.01112 0.93930 0.89243 1.43207 1.53685 1.04654 1.13300 1.21602 0.94592 1.05986 0.81346 1.21029 0.90809 0.77159 0.83569 1.90813 1.19872 1.47201 1.80862 1.46057 1.11046 1.73674 1.07054 1.21051 0.91185 0.96317 0.87305 0.89363 1.21771 0.99185 1.00139 0.95069 1.21459 0.98906 0.96176 0.98297 1.21195 0.98547 0.96006 0.95031 0.90243 1.22222 0.97865 0.84395 0.95460 1.86469 1.62293 1.29944 1.59183 1.21472 0.97820 1.01013 0.94280 1.21907 0.99435 0.96397 0.98969 1.18167 1.01373 0.85850 0.94118 1.19952 1.05285 0.89299 1.00263 1.20825 0.98317 0.97944 0.94485 1.20672 1.02458 0.96975 0.96370 1.20309 0.97847 0.90932 0.99282 1.18934 1.03283 0.92769 0.94045 0.77846 0.86834 1.18626 1.18136 0.81484 0.86401 0.85923 0.76472 0.90935 0.91045 0.91315 0.90964 0.93570 0.93588 0.77210 0.91897 0.90695 0.91671 0.91373 0.86785 0.85747 0.85937 0.85921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.88 12.88 -35.23 -0.45 -2.33 16 2 C -0.04 -0.06 3.06 36.00 0.11 0.05 16 3 Si 0.68 -0.19 30.82 -169.99 -5.24 -5.43 16 4 C -0.19 -0.51 5.58 -102.71 -0.57 -1.08 16 5 C 0.07 0.08 9.89 -16.73 -0.17 -0.09 16 6 N -0.47 -0.68 2.27 -115.71 -0.26 -0.95 16 7 C 0.09 -0.20 6.48 -5.20 -0.03 -0.24 16 8 C 0.49 0.19 7.86 -10.98 -0.09 0.10 16 9 O -0.51 -2.87 16.08 5.55 0.09 -2.78 16 10 N -0.73 1.65 5.08 -53.81 -0.27 1.38 16 11 C 0.15 -0.14 2.45 -67.93 -0.17 -0.31 16 12 H 0.09 0.13 7.58 -51.93 -0.39 -0.27 16 13 C -0.12 0.36 5.39 -26.73 -0.14 0.21 16 14 C -0.11 0.26 5.20 -26.74 -0.14 0.12 16 15 C -0.09 0.08 2.43 -90.62 -0.22 -0.14 16 16 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 17 C 0.08 -0.07 6.43 37.16 0.24 0.17 16 18 O -0.57 -0.28 13.19 -35.23 -0.46 -0.74 16 19 C -0.11 -0.03 5.10 -26.76 -0.14 -0.17 16 20 C -0.13 0.00 5.49 -26.76 -0.15 -0.15 16 21 C 0.11 0.40 6.80 -83.99 -0.57 -0.17 16 22 C -0.13 -0.36 10.00 -39.43 -0.39 -0.76 16 23 C -0.10 -0.24 10.01 -39.54 -0.40 -0.64 16 24 C -0.15 -0.42 9.97 -39.94 -0.40 -0.82 16 25 C -0.07 -0.25 10.05 -39.64 -0.40 -0.65 16 26 C -0.09 -0.38 6.35 -105.14 -0.67 -1.04 16 27 H 0.37 0.43 8.70 45.56 0.40 0.83 16 28 H 0.11 0.12 7.96 -51.93 -0.41 -0.29 16 29 H -0.26 -0.34 7.00 56.52 0.40 0.06 16 30 H -0.26 -0.78 7.11 56.52 0.40 -0.37 16 31 H 0.17 -0.25 6.27 -52.49 -0.33 -0.57 16 32 H 0.12 -0.51 8.14 -51.93 -0.42 -0.94 16 33 H 0.12 -0.69 8.12 -51.93 -0.42 -1.11 16 34 H 0.40 -2.19 8.60 -40.82 -0.35 -2.54 16 35 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 36 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 37 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 38 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 39 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 40 H 0.05 -0.09 8.14 -51.93 -0.42 -0.51 16 41 H 0.38 -1.34 9.12 45.56 0.42 -0.92 16 42 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 43 H 0.07 0.12 7.82 -51.93 -0.41 -0.28 16 44 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 45 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.11 0.11 8.06 -52.48 -0.42 -0.31 16 47 H 0.12 0.04 8.06 -52.49 -0.42 -0.38 16 48 H 0.12 0.11 8.06 -52.49 -0.42 -0.31 16 49 H 0.12 0.35 8.06 -52.49 -0.42 -0.07 16 LS Contribution 398.93 15.07 6.01 6.01 Total: 0.00 -11.05 398.93 -11.93 -22.98 By element: Atomic # 1 Polarization: -5.50 SS G_CDS: -7.05 Total: -12.55 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -4.29 Total: -5.59 kcal Atomic # 7 Polarization: 0.97 SS G_CDS: -0.54 Total: 0.43 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.83 Total: -5.85 kcal Atomic # 14 Polarization: -0.19 SS G_CDS: -5.24 Total: -5.43 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -11.05 -11.93 -22.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.957 kcal (2) G-P(sol) polarization free energy of solvation -11.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds