Wall clock time and date at job start Tue Mar 9 2021 12:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86299 * 109.47329 * 2 1 4 4 C 1.50698 * 109.47278 * 239.99601 * 2 1 3 5 5 C 1.34242 * 126.49676 * 105.02532 * 4 2 1 6 6 N 1.36837 * 109.93857 * 179.97438 * 5 4 2 7 7 C 1.46491 * 125.06218 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46957 * 265.02370 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 H 1.09001 * 109.46948 * 35.00281 * 11 10 8 13 13 C 1.52999 * 109.47481 * 154.99940 * 11 10 8 14 14 C 1.52995 * 109.47507 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47319 * 300.00556 * 14 13 11 16 16 H 1.08993 * 109.47268 * 299.99783 * 15 14 13 17 17 C 1.53000 * 109.47350 * 179.97438 * 15 14 13 18 18 O 1.42895 * 109.47677 * 175.00001 * 17 15 14 19 19 C 1.53005 * 109.47302 * 59.99629 * 15 14 13 20 20 C 1.52997 * 109.47288 * 275.00460 * 11 10 8 21 21 C 1.37701 * 109.87015 * 0.26772 * 6 5 4 22 22 C 1.39078 * 133.50747 * 179.73491 * 21 6 5 23 23 C 1.37792 * 119.77773 * 180.02562 * 22 21 6 24 24 C 1.38788 * 120.66391 * 359.97438 * 23 22 21 25 25 C 1.36674 * 120.52811 * 359.58230 * 24 23 22 26 26 C 1.39589 * 119.76191 * 0.65626 * 25 24 23 27 27 H 0.96705 * 113.99943 * 60.00349 * 1 2 3 28 28 H 1.09005 * 109.47091 * 119.99822 * 2 1 3 29 29 H 1.48502 * 110.00059 * 298.67945 * 3 2 1 30 30 H 1.48499 * 109.99787 * 59.99665 * 3 2 1 31 31 H 1.07995 * 125.03206 * 0.02562 * 5 4 2 32 32 H 1.09004 * 109.47166 * 145.02636 * 7 6 5 33 33 H 1.08994 * 109.47507 * 25.02342 * 7 6 5 34 34 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 35 35 H 1.09000 * 109.47556 * 300.00768 * 13 11 10 36 36 H 1.09007 * 109.46426 * 60.00536 * 13 11 10 37 37 H 1.09001 * 109.46891 * 60.00360 * 14 13 11 38 38 H 1.09000 * 109.47220 * 179.97438 * 14 13 11 39 39 H 1.08997 * 109.47090 * 295.00123 * 17 15 14 40 40 H 1.09005 * 109.47155 * 54.99754 * 17 15 14 41 41 H 0.96702 * 114.00381 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.47005 * 60.00136 * 19 15 14 43 43 H 1.09000 * 109.46851 * 179.97438 * 19 15 14 44 44 H 1.08993 * 109.47268 * 299.99834 * 20 11 10 45 45 H 1.09006 * 109.47495 * 60.00048 * 20 11 10 46 46 H 1.08006 * 120.11400 * 0.02562 * 22 21 6 47 47 H 1.07996 * 119.66778 * 179.97438 * 23 22 21 48 48 H 1.07993 * 119.73662 * 180.02562 * 24 23 22 49 49 H 1.07998 * 120.11345 * 179.91657 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.4613 -0.1377 -2.3227 6 7 2.8037 -1.0991 -3.2342 7 6 3.4095 -0.8405 -4.5427 8 6 2.3305 -0.7832 -5.5932 9 8 1.1697 -0.9421 -5.2797 10 7 2.6548 -0.5492 -6.8803 11 6 1.6054 -0.4874 -7.9006 12 1 0.7081 -0.0406 -7.4723 13 6 2.0872 0.3639 -9.0770 14 6 0.9915 0.4279 -10.1429 15 6 0.6736 -0.9862 -10.6330 16 1 1.5710 -1.4327 -11.0610 17 6 -0.4226 -0.9223 -11.6985 18 8 -0.6380 -2.2272 -12.2394 19 6 0.1917 -1.8375 -9.4566 20 6 1.2869 -1.9013 -8.3909 21 6 2.4891 -2.3454 -2.7404 22 6 2.6178 -3.6354 -3.2442 23 6 2.1988 -4.7096 -2.4898 24 6 1.6491 -4.5183 -1.2298 25 6 1.5216 -3.2600 -0.7118 26 6 1.9349 -2.1571 -1.4609 27 1 -0.3933 0.4417 -0.7651 28 1 1.7923 -0.5138 0.8900 29 1 1.5880 2.4585 -1.2243 30 1 1.5614 2.4678 1.2085 31 1 2.5979 0.9246 -2.4612 32 1 4.1091 -1.6409 -4.7838 33 1 3.9410 0.1106 -4.5155 34 1 3.5832 -0.4218 -7.1311 35 1 2.3142 1.3712 -8.7278 36 1 2.9845 -0.0830 -9.5053 37 1 0.0940 0.8744 -9.7149 38 1 1.3347 1.0347 -10.9808 39 1 -1.3462 -0.5587 -11.2481 40 1 -0.1157 -0.2447 -12.4953 41 1 -1.3212 -2.2620 -12.9228 42 1 -0.7059 -1.3909 -9.0286 43 1 -0.0353 -2.8447 -9.8059 44 1 2.1841 -2.3481 -8.8191 45 1 0.9435 -2.5078 -7.5528 46 1 3.0447 -3.7946 -4.2234 47 1 2.2992 -5.7105 -2.8828 48 1 1.3260 -5.3710 -0.6512 49 1 1.0916 -3.1188 0.2688 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7207542_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:06 Heat of formation + Delta-G solvation = -62.293126 kcal Electronic energy + Delta-G solvation = -30449.285836 eV Core-core repulsion = 26342.756551 eV Total energy + Delta-G solvation = -4106.529285 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.55091 -41.08534 -39.60930 -38.16939 -37.78447 -37.40816 -35.30059 -34.11285 -31.95416 -31.80311 -31.06080 -30.25071 -28.87027 -26.42537 -25.46219 -23.89049 -23.73799 -22.84428 -22.16694 -21.63237 -20.92303 -20.64447 -18.75658 -18.48498 -18.12753 -17.83813 -17.45730 -16.95378 -16.53232 -16.41737 -16.11283 -15.99831 -15.88055 -15.51245 -15.35109 -15.16873 -14.83046 -14.71524 -14.59600 -14.45397 -14.10787 -14.00198 -13.72879 -13.55237 -13.25249 -13.13612 -13.00624 -12.74240 -12.58126 -12.39908 -12.30494 -12.16885 -12.01891 -11.74822 -11.64754 -11.48704 -11.35462 -11.08009 -10.86597 -10.55912 -10.46269 -10.15675 -9.17153 -8.64377 -4.89603 0.12920 0.62723 1.34205 1.41360 1.45095 1.61393 1.70049 1.99527 2.19541 2.93503 3.26989 3.49344 3.55573 3.61220 3.66486 3.70110 3.74997 3.84587 3.93444 3.98077 4.03457 4.15098 4.20813 4.26089 4.28942 4.30929 4.36863 4.45233 4.48247 4.48929 4.56237 4.57870 4.67243 4.70875 4.77905 4.79185 4.88459 4.91868 5.03638 5.04534 5.10060 5.12576 5.16703 5.32708 5.38388 5.46214 5.49669 5.65221 5.72568 5.74300 6.18288 6.22231 6.47574 6.53243 6.85239 7.14160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.057 4.057 3 Si 0.788 3.212 4 C -0.215 4.215 5 C 0.075 3.925 6 N -0.466 5.466 7 C 0.088 3.912 8 C 0.489 3.511 9 O -0.574 6.574 10 N -0.708 5.708 11 C 0.149 3.851 12 H 0.060 0.940 13 C -0.115 4.115 14 C -0.108 4.108 15 C -0.086 4.086 16 H 0.077 0.923 17 C 0.074 3.926 18 O -0.596 6.596 19 C -0.105 4.105 20 C -0.122 4.122 21 C 0.091 3.909 22 C -0.134 4.134 23 C -0.108 4.108 24 C -0.154 4.154 25 C -0.088 4.088 26 C -0.116 4.116 27 H 0.381 0.619 28 H 0.110 0.890 29 H -0.273 1.273 30 H -0.304 1.304 31 H 0.198 0.802 32 H 0.144 0.856 33 H 0.167 0.833 34 H 0.421 0.579 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.395 0.605 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.131 0.869 47 H 0.144 0.856 48 H 0.136 0.864 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.063 4.279 -6.669 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.165 4.165 3 Si 0.692 3.308 4 C -0.223 4.223 5 C -0.051 4.051 6 N -0.148 5.148 7 C -0.037 4.037 8 C 0.275 3.725 9 O -0.453 6.453 10 N -0.361 5.361 11 C 0.044 3.956 12 H 0.078 0.922 13 C -0.153 4.153 14 C -0.146 4.146 15 C -0.105 4.105 16 H 0.095 0.905 17 C -0.003 4.003 18 O -0.405 6.405 19 C -0.143 4.143 20 C -0.160 4.160 21 C -0.014 4.014 22 C -0.155 4.155 23 C -0.127 4.127 24 C -0.173 4.173 25 C -0.106 4.106 26 C -0.120 4.120 27 H 0.229 0.771 28 H 0.128 0.872 29 H -0.200 1.200 30 H -0.232 1.232 31 H 0.214 0.786 32 H 0.162 0.838 33 H 0.184 0.816 34 H 0.259 0.741 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.245 0.755 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.057 0.943 46 H 0.149 0.851 47 H 0.162 0.838 48 H 0.154 0.846 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.743 4.616 -5.783 10.710 hybrid contribution -1.839 -0.424 -0.869 2.078 sum 5.904 4.192 -6.651 9.832 Atomic orbital electron populations 1.86553 1.19572 1.80597 1.49628 1.24741 0.82509 1.12168 0.97086 0.94168 0.89550 0.70357 0.76766 1.20707 1.10946 0.91822 0.98805 1.22024 0.99485 0.95087 0.88498 1.43439 1.53132 1.03818 1.14398 1.22008 0.93698 1.09282 0.78676 1.21535 0.90508 0.75926 0.84549 1.90801 1.22461 1.50147 1.81852 1.45906 1.11871 1.72229 1.06095 1.20920 0.90863 0.95632 0.88165 0.92155 1.21736 0.99385 1.00388 0.93806 1.21462 0.99047 0.95183 0.98942 1.21181 0.98373 0.96630 0.94267 0.90460 1.22323 0.97970 0.84150 0.95877 1.86429 1.63160 1.30895 1.59988 1.21411 0.97638 1.00262 0.95033 1.21818 0.99550 0.96874 0.97783 1.18393 1.01760 0.87006 0.94232 1.20233 1.05088 0.89234 1.00923 1.21124 0.98199 0.98989 0.94382 1.20918 1.02354 0.97108 0.96899 1.20460 0.98909 0.91687 0.99581 1.19347 1.03871 0.93863 0.94907 0.77066 0.87220 1.19960 1.23172 0.78575 0.83828 0.81598 0.74125 0.89676 0.89420 0.91844 0.89419 0.93516 0.92138 0.75518 0.93064 0.92510 0.90622 0.94336 0.85150 0.83792 0.84573 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -5.05 12.88 -148.98 -1.92 -6.97 16 2 C -0.06 -0.26 3.06 71.24 0.22 -0.04 16 3 Si 0.79 -0.69 30.82 68.60 2.11 1.42 16 4 C -0.22 -1.34 5.58 -18.63 -0.10 -1.44 16 5 C 0.07 0.14 9.89 83.00 0.82 0.96 16 6 N -0.47 -1.07 2.27 -520.01 -1.18 -2.25 16 7 C 0.09 -0.58 6.48 85.64 0.56 -0.03 16 8 C 0.49 0.07 7.86 87.66 0.69 0.76 16 9 O -0.57 -7.14 16.08 -3.04 -0.05 -7.19 16 10 N -0.71 4.13 5.08 -442.54 -2.25 1.89 16 11 C 0.15 -0.31 2.45 44.99 0.11 -0.20 16 12 H 0.06 0.26 7.58 -2.39 -0.02 0.24 16 13 C -0.12 0.87 5.39 30.59 0.16 1.03 16 14 C -0.11 0.62 5.20 30.59 0.16 0.78 16 15 C -0.09 0.17 2.43 -10.79 -0.03 0.14 16 16 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 17 C 0.07 -0.14 6.43 71.98 0.46 0.32 16 18 O -0.60 -0.82 13.19 -148.98 -1.97 -2.78 16 19 C -0.11 -0.21 5.10 30.58 0.16 -0.06 16 20 C -0.12 -0.12 5.49 30.58 0.17 0.04 16 21 C 0.09 0.74 6.80 39.03 0.27 1.00 16 22 C -0.13 -0.85 10.00 22.37 0.22 -0.63 16 23 C -0.11 -0.64 10.01 22.30 0.22 -0.42 16 24 C -0.15 -1.15 9.97 22.03 0.22 -0.93 16 25 C -0.09 -0.90 10.05 22.23 0.22 -0.68 16 26 C -0.12 -1.22 6.35 -20.20 -0.13 -1.35 16 27 H 0.38 1.60 8.70 -74.05 -0.64 0.96 16 28 H 0.11 0.46 7.96 -2.38 -0.02 0.44 16 29 H -0.27 -0.30 7.00 99.48 0.70 0.39 16 30 H -0.30 -2.10 7.11 99.48 0.71 -1.39 16 31 H 0.20 -1.01 6.27 -2.91 -0.02 -1.02 16 32 H 0.14 -1.66 8.14 -2.38 -0.02 -1.68 16 33 H 0.17 -2.54 8.12 -2.39 -0.02 -2.56 16 34 H 0.42 -5.76 8.60 -92.71 -0.80 -6.56 16 35 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 36 H 0.09 -0.89 8.14 -2.38 -0.02 -0.90 16 37 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 38 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.05 -0.11 8.14 -2.39 -0.02 -0.12 16 40 H 0.06 -0.29 8.14 -2.38 -0.02 -0.31 16 41 H 0.40 -2.65 9.12 -74.06 -0.68 -3.32 16 42 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.06 0.31 7.82 -2.39 -0.02 0.29 16 44 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.04 0.27 8.14 -2.38 -0.02 0.25 16 46 H 0.13 0.24 8.06 -2.91 -0.02 0.21 16 47 H 0.14 0.13 8.06 -2.91 -0.02 0.11 16 48 H 0.14 0.45 8.06 -2.91 -0.02 0.43 16 49 H 0.12 1.09 8.06 -2.91 -0.02 1.07 16 Total: 0.00 -30.03 398.93 -1.96 -31.99 By element: Atomic # 1 Polarization: -14.27 SS G_CDS: -1.12 Total: -15.38 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 4.40 Total: -0.73 kcal Atomic # 7 Polarization: 3.06 SS G_CDS: -3.43 Total: -0.36 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -3.93 Total: -16.94 kcal Atomic # 14 Polarization: -0.69 SS G_CDS: 2.11 Total: 1.42 kcal Total: -30.03 -1.96 -31.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7207542_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.302 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds