Wall clock time and date at job start Tue Mar 9 2021 13:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86297 * 109.47397 * 2 1 4 4 C 1.50704 * 109.47000 * 120.00419 * 2 1 3 5 5 C 1.32766 * 124.71560 * 64.99633 * 4 2 1 6 6 C 1.44423 * 113.08566 * 180.02562 * 5 4 2 7 7 C 1.47192 * 123.46083 * 180.02562 * 6 5 4 8 8 O 1.21639 * 120.00079 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99722 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99748 * 179.97438 * 9 7 6 11 11 H 1.08994 * 112.85326 * 23.79768 * 10 9 7 12 12 C 1.53782 * 113.61531 * 154.99749 * 10 9 7 13 13 C 1.53781 * 87.08260 * 89.19598 * 12 10 9 14 14 H 1.09002 * 113.61445 * 139.98212 * 13 12 10 15 15 O 1.42905 * 113.61505 * 270.80084 * 13 12 10 16 16 C 1.53786 * 87.17350 * 25.39213 * 13 12 10 17 17 C 1.36010 * 113.07791 * 0.26514 * 6 5 4 18 18 S 1.70452 * 110.81556 * 359.59428 * 17 6 5 19 19 H 0.96695 * 113.99782 * 300.00077 * 1 2 3 20 20 H 1.09003 * 109.46927 * 239.99848 * 2 1 3 21 21 H 1.48499 * 110.00038 * 300.00120 * 3 2 1 22 22 H 1.48507 * 109.99709 * 61.31926 * 3 2 1 23 23 H 1.08008 * 123.45468 * 359.97438 * 5 4 2 24 24 H 0.97003 * 120.00412 * 359.97438 * 9 7 6 25 25 H 1.09001 * 113.61250 * 334.64416 * 12 10 9 26 26 H 1.08997 * 113.61225 * 203.74257 * 12 10 9 27 27 H 0.96696 * 114.00145 * 178.47219 * 15 13 12 28 28 H 1.08993 * 113.61491 * 89.15923 * 16 13 12 29 29 H 1.09000 * 113.61138 * 220.06261 * 16 13 12 30 30 H 1.07993 * 124.59440 * 179.71258 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.7485 -2.0004 1.4864 6 6 2.3355 -2.4182 2.7380 7 6 2.2692 -3.7985 3.2448 8 8 1.6968 -4.6564 2.5998 9 7 2.8418 -4.1116 4.4240 10 6 2.7754 -5.4854 4.9286 11 1 2.6277 -6.2203 4.1374 12 6 3.9165 -5.8423 5.8958 13 6 3.0120 -5.3280 7.0282 14 1 3.0555 -5.9359 7.9319 15 8 3.1620 -3.9314 7.2912 16 6 1.8158 -5.6589 6.1201 17 6 2.9514 -1.4040 3.4029 18 16 2.8388 0.0524 2.5245 19 1 -0.3933 0.4417 0.7650 20 1 1.7923 -0.5139 -0.8900 21 1 1.5616 2.4679 -1.2085 22 1 1.5880 2.4585 1.2243 23 1 1.2147 -2.6685 0.8266 24 1 3.2979 -3.4274 4.9385 25 1 4.8159 -5.2441 5.7495 26 1 4.1223 -6.9111 5.9527 27 1 2.5791 -3.5973 7.9865 28 1 1.4464 -6.6775 6.2385 29 1 1.0219 -4.9129 6.1547 30 1 3.4464 -1.5079 4.3570 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_7348514_6894386.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:06 Heat of formation + Delta-G solvation = -54.589954 kcal Electronic energy + Delta-G solvation = -16680.664538 eV Core-core repulsion = 13763.187821 eV Total energy + Delta-G solvation = -2917.476717 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 256.060 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.48453 -39.93387 -38.78838 -37.21507 -36.05837 -34.04660 -31.64360 -26.99524 -26.79114 -26.54449 -24.59285 -22.22301 -20.70688 -20.61645 -19.00751 -18.43733 -17.97058 -17.65867 -16.86331 -16.45299 -16.39076 -15.95492 -15.61704 -15.38745 -14.95740 -14.47312 -14.08332 -13.84884 -13.68114 -13.54265 -13.43550 -12.77646 -12.60502 -12.43890 -12.35065 -11.86425 -11.48050 -11.09515 -10.77082 -10.69006 -10.20988 -10.01116 -9.47560 -5.03562 -0.37544 0.36909 0.67348 0.78472 1.21478 1.55316 1.90250 2.03953 2.20291 3.11054 3.29682 3.47250 3.57224 3.69305 3.83556 3.90306 3.96456 4.14272 4.25597 4.49122 4.68604 4.69548 4.70959 4.80395 4.85160 4.95537 4.97259 5.02182 5.15055 5.52156 6.39781 6.44912 6.83506 7.11416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.048 4.048 3 Si 0.730 3.270 4 C -0.244 4.244 5 C -0.075 4.075 6 C -0.183 4.183 7 C 0.573 3.427 8 O -0.587 6.587 9 N -0.688 5.688 10 C 0.107 3.893 11 H 0.083 0.917 12 C -0.134 4.134 13 C 0.085 3.915 14 H 0.090 0.910 15 O -0.567 6.567 16 C -0.183 4.183 17 C -0.191 4.191 18 S 0.255 5.745 19 H 0.388 0.612 20 H 0.130 0.870 21 H -0.275 1.275 22 H -0.249 1.249 23 H 0.133 0.867 24 H 0.415 0.585 25 H 0.081 0.919 26 H 0.127 0.873 27 H 0.399 0.601 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.510 2.990 5.923 8.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.158 4.158 3 Si 0.630 3.370 4 C -0.361 4.361 5 C -0.105 4.105 6 C -0.201 4.201 7 C 0.360 3.640 8 O -0.468 6.468 9 N -0.340 5.340 10 C 0.001 3.999 11 H 0.101 0.899 12 C -0.172 4.172 13 C 0.026 3.974 14 H 0.108 0.892 15 O -0.376 6.376 16 C -0.222 4.222 17 C -0.329 4.329 18 S 0.522 5.478 19 H 0.238 0.762 20 H 0.147 0.853 21 H -0.200 1.200 22 H -0.174 1.174 23 H 0.151 0.849 24 H 0.254 0.746 25 H 0.099 0.901 26 H 0.145 0.855 27 H 0.250 0.750 28 H 0.128 0.872 29 H 0.083 0.917 30 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 4.952 4.333 4.742 8.111 hybrid contribution -2.080 -1.707 0.703 2.781 sum 2.872 2.627 5.446 6.694 Atomic orbital electron populations 1.86613 1.18184 1.80442 1.50058 1.24761 0.83305 1.11559 0.96197 0.94370 0.90479 0.71992 0.80152 1.24847 1.09477 0.98075 1.03701 1.20977 0.98888 0.95101 0.95491 1.20109 1.08117 0.93801 0.98090 1.17995 0.77684 0.87466 0.80823 1.90775 1.45642 1.51125 1.59304 1.45441 1.56307 1.11694 1.20553 1.21991 0.98426 0.83580 0.95883 0.89891 1.23479 0.97013 1.03526 0.93154 1.22761 0.94594 0.82926 0.97097 0.89185 1.86301 1.66218 1.23029 1.62035 1.24186 0.97901 1.03556 0.96529 1.26145 1.02978 0.98150 1.05628 1.82937 1.48525 1.07485 1.08878 0.76238 0.85279 1.20041 1.17368 0.84903 0.74646 0.90071 0.85473 0.74987 0.87230 0.91665 0.78514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.98 12.88 -148.98 -1.92 -3.90 16 2 C -0.05 0.00 2.94 71.24 0.21 0.21 16 3 Si 0.73 -2.25 30.92 68.60 2.12 -0.13 16 4 C -0.24 -0.27 5.65 24.51 0.14 -0.13 16 5 C -0.08 -0.48 9.95 22.67 0.23 -0.26 16 6 C -0.18 -0.96 5.98 -19.87 -0.12 -1.08 16 7 C 0.57 5.55 7.79 86.60 0.67 6.22 16 8 O -0.59 -10.91 16.40 -4.16 -0.07 -10.98 16 9 N -0.69 -2.21 5.12 -443.22 -2.27 -4.48 16 10 C 0.11 0.23 4.33 45.58 0.20 0.43 16 11 H 0.08 0.54 7.46 -2.39 -0.02 0.52 16 12 C -0.13 0.46 7.66 31.12 0.24 0.70 16 13 C 0.09 -0.41 5.27 31.12 0.16 -0.24 16 14 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 15 O -0.57 2.72 12.33 -148.98 -1.84 0.88 16 16 C -0.18 0.26 7.73 31.18 0.24 0.50 16 17 C -0.19 0.38 10.38 67.30 0.70 1.08 16 18 S 0.26 -1.00 20.20 -56.49 -1.14 -2.14 16 19 H 0.39 -1.03 8.70 -74.06 -0.64 -1.67 16 20 H 0.13 -0.11 7.96 -2.39 -0.02 -0.13 16 21 H -0.27 -1.03 7.11 99.48 0.71 -0.32 16 22 H -0.25 0.32 7.11 99.48 0.71 1.03 16 23 H 0.13 1.35 8.06 -2.91 -0.02 1.33 16 24 H 0.42 -0.48 6.10 -92.71 -0.57 -1.05 16 25 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.40 -4.61 9.12 -74.06 -0.68 -5.29 16 28 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.20 -1.54 7.01 -2.91 -0.02 -1.56 16 Total: 0.00 -19.57 274.86 -3.09 -22.66 By element: Atomic # 1 Polarization: -8.69 SS G_CDS: -0.65 Total: -9.34 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 2.67 Total: 7.43 kcal Atomic # 7 Polarization: -2.21 SS G_CDS: -2.27 Total: -4.48 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -3.82 Total: -14.00 kcal Atomic # 14 Polarization: -2.25 SS G_CDS: 2.12 Total: -0.13 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -1.14 Total: -2.14 kcal Total: -19.57 -3.09 -22.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_7348514_6894386.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.930 kcal (2) G-P(sol) polarization free energy of solvation -19.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds