Wall clock time and date at job start Tue Mar 9 2021 12:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38208 * 120.00175 * 2 1 4 4 C 1.38258 * 120.00064 * 180.29366 * 3 2 1 5 5 C 1.50698 * 120.00512 * 179.74425 * 4 3 2 6 6 H 1.09007 * 112.84511 * 10.92466 * 5 4 3 7 7 C 1.54043 * 113.69846 * 142.19649 * 5 4 3 8 8 C 1.53777 * 86.98643 * 139.99572 * 7 5 4 9 9 H 1.09002 * 113.61307 * 219.98108 * 8 7 5 10 10 N 1.46494 * 113.61835 * 89.16244 * 8 7 5 11 11 C 1.34785 * 120.00447 * 105.86342 * 10 8 7 12 12 O 1.21577 * 119.99419 * 0.02562 * 11 10 8 13 13 C 1.47663 * 120.00347 * 180.02562 * 11 10 8 14 14 C 1.40005 * 120.45157 * 353.97732 * 13 11 10 15 15 N 1.31310 * 121.37009 * 179.97438 * 14 13 11 16 16 C 1.32818 * 121.89287 * 359.97438 * 15 14 13 17 17 N 1.37156 * 132.96024 * 180.02562 * 16 15 14 18 18 C 1.36943 * 110.11111 * 180.02562 * 17 16 15 19 19 C 1.34181 * 109.95630 * 359.97438 * 18 17 16 20 20 C 1.50694 * 126.60216 * 180.02562 * 19 18 17 21 21 O 1.42904 * 109.46936 * 105.02557 * 20 19 18 22 22 Si 1.86302 * 109.47222 * 345.02653 * 20 19 18 23 23 C 1.41015 * 120.08431 * 0.29872 * 16 15 14 24 24 C 1.39285 * 119.61688 * 359.40311 * 23 16 15 25 25 C 1.50704 * 121.03102 * 180.27013 * 24 23 16 26 26 C 1.53780 * 87.17419 * 334.57029 * 8 7 5 27 27 C 1.38213 * 119.99958 * 359.47588 * 4 3 2 28 28 C 1.38254 * 119.99870 * 0.25400 * 27 4 3 29 29 C 1.38213 * 120.00299 * 0.02562 * 28 27 4 30 30 H 1.09005 * 109.47253 * 270.23317 * 1 2 3 31 31 H 1.09001 * 109.47110 * 30.22949 * 1 2 3 32 32 H 1.08996 * 109.47422 * 150.23074 * 1 2 3 33 33 H 1.08005 * 120.00470 * 0.04767 * 3 2 1 34 34 H 1.08998 * 113.61400 * 25.48784 * 7 5 4 35 35 H 1.09002 * 113.69707 * 254.51254 * 7 5 4 36 36 H 0.96996 * 120.00287 * 285.86537 * 10 8 7 37 37 H 1.07996 * 119.31510 * 359.95117 * 14 13 11 38 38 H 0.97002 * 124.94547 * 0.02684 * 17 16 15 39 39 H 1.08007 * 125.02347 * 179.97438 * 18 17 16 40 40 H 1.08998 * 109.47489 * 225.02561 * 20 19 18 41 41 H 0.96697 * 114.00403 * 299.99539 * 21 20 19 42 42 H 1.48496 * 110.00202 * 179.97438 * 22 20 19 43 43 H 1.48500 * 110.00000 * 301.32350 * 22 20 19 44 44 H 1.09007 * 109.46790 * 264.02950 * 25 24 23 45 45 H 1.09002 * 109.47313 * 24.02677 * 25 24 23 46 46 H 1.09003 * 109.46985 * 144.02802 * 25 24 23 47 47 H 1.08999 * 113.61435 * 140.02334 * 26 8 7 48 48 H 1.09001 * 113.61637 * 270.84769 * 26 8 7 49 49 H 1.07998 * 120.00474 * 180.26769 * 27 4 3 50 50 H 1.08003 * 120.00366 * 179.97438 * 28 27 4 51 51 H 1.07996 * 120.00475 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1969 0.0000 4 6 3.5806 1.1969 -0.0061 5 6 4.3342 2.5019 -0.0120 6 1 3.6925 3.3620 0.1796 7 6 5.6128 2.4823 0.8470 8 6 6.2801 3.2983 -0.2727 9 1 7.3073 2.9977 -0.4791 10 7 6.1328 4.7468 -0.1110 11 6 7.1842 5.4911 0.2857 12 8 8.2549 4.9602 0.5088 13 6 7.0355 6.9511 0.4492 14 6 5.8468 7.5895 0.0758 15 7 5.6950 8.8865 0.2138 16 6 6.6555 9.6563 0.7125 17 7 6.7430 11.0037 0.9536 18 6 7.9677 11.3085 1.4852 19 6 8.7045 10.1936 1.6066 20 6 10.1075 10.0984 2.1482 21 8 10.0736 9.5399 3.4631 22 14 10.8640 11.7996 2.2154 23 6 7.8844 9.0876 1.1062 24 6 8.0789 7.7141 0.9803 25 6 9.3772 7.0720 1.3967 26 6 5.2519 2.6780 -1.2333 27 6 4.2717 -0.0001 -0.0013 28 6 3.5804 -1.1974 0.0043 29 6 2.1982 -1.1974 0.0046 30 1 -0.3634 0.0042 1.0277 31 1 -0.3633 0.8879 -0.5174 32 1 -0.3634 -0.8920 -0.5102 33 1 1.6581 2.1323 0.0008 34 1 6.0379 1.4868 0.9746 35 1 5.5176 3.0266 1.7866 36 1 5.2786 5.1704 -0.2893 37 1 5.0380 7.0032 -0.3346 38 1 6.0396 11.6471 0.7738 39 1 8.2926 12.2997 1.7653 40 1 10.7056 9.4602 1.4977 41 1 9.5576 10.0568 4.0969 42 1 12.2477 11.7194 2.7485 43 1 10.8759 12.4041 0.8591 44 1 10.0231 6.9604 0.5257 45 1 9.8718 7.6998 2.1379 46 1 9.1756 6.0912 1.8276 47 1 4.8656 3.3801 -1.9722 48 1 5.5790 1.7365 -1.6746 49 1 5.3516 -0.0002 -0.0017 50 1 4.1203 -2.1327 0.0077 51 1 1.6582 -2.1326 0.0086 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650858_12890568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:50:47 Heat of formation + Delta-G solvation = 58.293598 kcal Electronic energy + Delta-G solvation = -33392.039950 eV Core-core repulsion = 29031.091416 eV Total energy + Delta-G solvation = -4360.948533 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.86295 -41.60908 -40.54778 -39.18679 -38.52969 -37.70471 -35.25346 -34.70347 -33.36834 -32.10354 -31.84691 -30.79213 -28.92943 -27.77935 -26.67209 -26.64349 -26.07443 -24.69074 -23.97610 -23.04540 -22.22558 -21.83243 -20.64911 -19.87581 -19.32668 -18.78648 -17.78892 -17.55004 -17.48618 -17.05770 -16.72508 -16.54062 -16.27007 -16.11206 -15.93303 -15.57189 -15.53427 -15.27479 -14.93038 -14.73723 -14.58639 -14.41537 -14.20812 -14.03818 -13.96286 -13.79147 -13.73385 -13.63060 -13.43466 -13.23340 -13.18323 -13.01747 -12.73129 -12.65757 -12.30477 -12.13579 -12.03848 -11.68774 -11.62134 -11.19434 -11.15795 -11.15016 -10.57473 -10.21111 -10.15784 -9.66458 -9.63531 -9.42892 -9.11839 -4.98412 -0.36941 -0.09178 0.43447 0.49848 1.35623 1.43539 1.65620 1.74891 1.77190 2.00171 2.06162 2.73498 2.80435 3.29636 3.45560 3.49520 3.58822 3.63458 3.66968 3.70204 3.74296 3.76381 3.94737 4.02125 4.08308 4.14556 4.21091 4.27447 4.28099 4.30497 4.45545 4.50625 4.56492 4.57824 4.63653 4.66637 4.75004 4.78032 4.78154 4.80496 4.85676 4.92143 4.98937 5.01959 5.04803 5.12782 5.20168 5.20628 5.26034 5.31583 5.37924 5.55421 5.59910 5.72074 5.73049 5.76454 6.15079 6.23072 6.44400 6.81878 6.88888 7.13947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.129 4.129 4 C -0.073 4.073 5 C -0.066 4.066 6 H 0.110 0.890 7 C -0.142 4.142 8 C 0.119 3.881 9 H 0.088 0.912 10 N -0.695 5.695 11 C 0.572 3.428 12 O -0.565 6.565 13 C -0.241 4.241 14 C 0.179 3.821 15 N -0.515 5.515 16 C 0.288 3.712 17 N -0.560 5.560 18 C 0.097 3.903 19 C -0.207 4.207 20 C -0.050 4.050 21 O -0.558 6.558 22 Si 0.805 3.195 23 C -0.167 4.167 24 C 0.060 3.940 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.134 4.134 28 C -0.125 4.125 29 C -0.141 4.141 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.413 0.587 37 H 0.194 0.806 38 H 0.439 0.561 39 H 0.232 0.768 40 H 0.094 0.906 41 H 0.395 0.605 42 H -0.305 1.305 43 H -0.281 1.281 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.131 0.869 50 H 0.132 0.868 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.147 5.767 0.643 7.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.073 4.073 5 C -0.084 4.084 6 H 0.128 0.872 7 C -0.181 4.181 8 C 0.013 3.987 9 H 0.106 0.894 10 N -0.347 5.347 11 C 0.361 3.639 12 O -0.445 6.445 13 C -0.248 4.248 14 C 0.011 3.989 15 N -0.228 5.228 16 C 0.054 3.946 17 N -0.166 5.166 18 C -0.030 4.030 19 C -0.214 4.214 20 C -0.159 4.159 21 O -0.366 6.366 22 Si 0.709 3.291 23 C -0.174 4.174 24 C 0.051 3.949 25 C -0.177 4.177 26 C -0.161 4.161 27 C -0.152 4.152 28 C -0.143 4.143 29 C -0.159 4.159 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.151 0.849 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.251 0.749 37 H 0.210 0.790 38 H 0.281 0.719 39 H 0.248 0.752 40 H 0.111 0.889 41 H 0.245 0.755 42 H -0.234 1.234 43 H -0.208 1.208 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.118 0.882 49 H 0.149 0.851 50 H 0.150 0.850 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.249 6.046 -0.005 7.390 hybrid contribution 0.091 -1.034 -0.306 1.082 sum -4.159 5.012 -0.311 6.520 Atomic orbital electron populations 1.20834 0.90127 1.03431 1.02803 1.20227 0.97121 0.93319 0.99071 1.21174 0.93830 0.98129 1.01566 1.19839 0.93535 0.94892 0.98988 1.21635 0.94668 0.95038 0.97040 0.87203 1.23589 0.95809 1.01013 0.97677 1.21834 1.00197 0.79274 0.97362 0.89408 1.45429 1.13510 1.07275 1.68522 1.18008 0.83752 0.86061 0.76073 1.90744 1.28033 1.74155 1.51591 1.20489 0.97920 0.94024 1.12387 1.22944 0.95067 0.88457 0.92450 1.66511 1.31330 1.06343 1.18589 1.18783 0.91155 0.86775 0.97903 1.41626 1.16324 1.04664 1.54013 1.22409 0.83011 1.00454 0.97078 1.20807 0.98402 0.91476 1.10733 1.24733 0.94447 1.11143 0.85535 1.86474 1.76005 1.55110 1.18999 0.94062 0.79462 0.74561 0.80994 1.19788 0.96630 0.93441 1.07542 1.20059 0.95063 0.91251 0.88501 1.21087 0.93054 1.01718 1.01885 1.23353 0.94634 1.02014 0.96110 1.21194 1.00523 0.92097 1.01345 1.21386 0.94565 0.98754 0.99602 1.21298 0.94693 0.98186 1.01708 0.90775 0.90815 0.91081 0.84940 0.88620 0.91610 0.74890 0.78980 0.71916 0.75179 0.88875 0.75528 1.23356 1.20776 0.91080 0.89748 0.90074 0.89220 0.88198 0.85131 0.84973 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.18 10.01 71.23 0.71 0.89 16 2 C -0.10 -0.22 5.88 -19.87 -0.12 -0.34 16 3 C -0.13 -0.19 9.37 22.27 0.21 0.02 16 4 C -0.07 -0.07 5.29 -19.87 -0.11 -0.17 16 5 C -0.07 0.18 3.87 -10.92 -0.04 0.14 16 6 H 0.11 -0.58 8.09 -2.38 -0.02 -0.60 16 7 C -0.14 0.05 7.27 31.21 0.23 0.28 16 8 C 0.12 0.01 4.29 45.52 0.20 0.21 16 9 H 0.09 0.38 7.50 -2.39 -0.02 0.36 16 10 N -0.70 0.10 5.22 -443.08 -2.31 -2.21 16 11 C 0.57 4.04 7.72 86.73 0.67 4.71 16 12 O -0.57 -8.03 13.11 -3.96 -0.05 -8.08 16 13 C -0.24 -1.52 5.89 -19.99 -0.12 -1.63 16 14 C 0.18 0.40 10.67 85.20 0.91 1.31 16 15 N -0.51 -2.52 10.37 -191.75 -1.99 -4.51 16 16 C 0.29 1.20 8.42 134.02 1.13 2.33 16 17 N -0.56 2.14 6.04 -192.25 -1.16 0.98 16 18 C 0.10 -0.65 10.44 82.97 0.87 0.21 16 19 C -0.21 0.01 5.57 -18.64 -0.10 -0.09 16 20 C -0.05 0.03 1.88 71.23 0.13 0.16 16 21 O -0.56 -0.21 11.66 -148.98 -1.74 -1.95 16 22 Si 0.80 -4.25 30.77 68.60 2.11 -2.14 16 23 C -0.17 -1.01 6.16 -20.19 -0.12 -1.14 16 24 C 0.06 0.52 5.98 -19.25 -0.12 0.41 16 25 C -0.12 -1.20 8.46 71.24 0.60 -0.60 16 26 C -0.12 0.44 7.29 31.12 0.23 0.67 16 27 C -0.13 -0.22 8.62 22.27 0.19 -0.03 16 28 C -0.13 -0.28 10.05 22.27 0.22 -0.06 16 29 C -0.14 -0.37 9.70 22.27 0.22 -0.15 16 30 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 31 H 0.07 -0.22 8.09 -2.39 -0.02 -0.24 16 32 H 0.07 -0.18 8.09 -2.39 -0.02 -0.19 16 33 H 0.13 -0.26 8.05 -2.91 -0.02 -0.28 16 34 H 0.10 -0.03 6.33 -2.39 -0.02 -0.05 16 35 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.41 -2.57 6.78 -92.71 -0.63 -3.20 16 37 H 0.19 -1.16 6.43 -2.91 -0.02 -1.18 16 38 H 0.44 -4.19 8.96 -92.71 -0.83 -5.02 16 39 H 0.23 -3.88 6.35 -2.91 -0.02 -3.90 16 40 H 0.09 0.30 7.13 -2.39 -0.02 0.28 16 41 H 0.39 -3.34 8.70 -74.06 -0.64 -3.99 16 42 H -0.31 -1.10 7.11 99.48 0.71 -0.39 16 43 H -0.28 0.25 7.11 99.48 0.71 0.95 16 44 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.08 0.76 4.79 -2.39 -0.01 0.75 16 46 H 0.08 1.07 5.96 -2.39 -0.01 1.06 16 47 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 48 H 0.10 -0.33 7.73 -2.39 -0.02 -0.35 16 49 H 0.13 -0.12 6.67 -2.91 -0.02 -0.14 16 50 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 51 H 0.13 -0.02 8.06 -2.91 -0.02 -0.04 16 Total: 0.00 -26.60 408.52 -0.40 -27.00 By element: Atomic # 1 Polarization: -15.15 SS G_CDS: -1.05 Total: -16.20 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 5.79 Total: 7.12 kcal Atomic # 7 Polarization: -0.28 SS G_CDS: -5.46 Total: -5.74 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -1.79 Total: -10.03 kcal Atomic # 14 Polarization: -4.25 SS G_CDS: 2.11 Total: -2.14 kcal Total: -26.60 -0.40 -27.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650858_12890568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.289 kcal (2) G-P(sol) polarization free energy of solvation -26.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds