Wall clock time and date at job start Tue Mar 9 2021 12:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38214 * 120.00621 * 2 1 4 4 C 1.38254 * 120.00187 * 180.27354 * 3 2 1 5 5 C 1.50694 * 119.99896 * 179.74008 * 4 3 2 6 6 H 1.09000 * 112.85480 * 348.53147 * 5 4 3 7 7 C 1.53787 * 113.61329 * 119.73156 * 5 4 3 8 8 C 1.53777 * 87.08256 * 139.98405 * 7 5 4 9 9 H 1.09005 * 113.61254 * 219.93484 * 8 7 5 10 10 N 1.46499 * 113.62025 * 89.11766 * 8 7 5 11 11 C 1.34771 * 120.00260 * 154.99716 * 10 8 7 12 12 O 1.21585 * 120.00255 * 0.02562 * 11 10 8 13 13 C 1.47566 * 120.00009 * 179.97438 * 11 10 8 14 14 C 1.40207 * 120.12349 * 180.02562 * 13 11 10 15 15 O 1.35654 * 119.99868 * 359.97438 * 14 13 11 16 16 C 1.38821 * 119.99747 * 179.97438 * 14 13 11 17 17 C 1.37766 * 120.24277 * 0.02562 * 16 14 13 18 18 C 1.39846 * 120.24886 * 359.97438 * 17 16 14 19 19 C 1.47808 * 120.00350 * 179.97438 * 18 17 16 20 20 C 1.35937 * 125.93063 * 0.02562 * 19 18 17 21 21 C 1.40969 * 106.74392 * 179.76950 * 20 19 18 22 22 C 1.34706 * 107.02828 * 0.40425 * 21 20 19 23 23 C 1.50699 * 125.66608 * 179.85189 * 22 21 20 24 24 O 1.42898 * 109.46964 * 299.71871 * 23 22 21 25 25 Si 1.86301 * 109.47146 * 179.71789 * 23 22 21 26 26 O 1.34345 * 108.67056 * 359.59245 * 22 21 20 27 27 C 1.39181 * 119.99693 * 0.24922 * 18 17 16 28 28 C 1.53779 * 87.07992 * 334.56495 * 8 7 5 29 29 C 1.38210 * 119.99825 * 359.47349 * 4 3 2 30 30 C 1.38256 * 120.00493 * 0.24968 * 29 4 3 31 31 C 1.38216 * 119.99546 * 0.02562 * 30 29 4 32 32 H 1.09004 * 109.46948 * 270.28158 * 1 2 3 33 33 H 1.09006 * 109.46646 * 30.27842 * 1 2 3 34 34 H 1.08993 * 109.47330 * 150.27658 * 1 2 3 35 35 H 1.08002 * 119.99597 * 0.02562 * 3 2 1 36 36 H 1.09001 * 113.61482 * 25.42902 * 7 5 4 37 37 H 1.09001 * 113.60885 * 254.52766 * 7 5 4 38 38 H 0.97004 * 119.99352 * 334.99930 * 10 8 7 39 39 H 0.96695 * 113.99958 * 269.97119 * 15 14 13 40 40 H 1.08004 * 119.87617 * 180.02562 * 16 14 13 41 41 H 1.08006 * 119.87599 * 179.97438 * 17 16 14 42 42 H 1.08002 * 126.62805 * 359.97438 * 20 19 18 43 43 H 1.08001 * 126.48787 * 180.29318 * 21 20 19 44 44 H 1.09002 * 109.46959 * 59.71842 * 23 22 21 45 45 H 0.96698 * 113.99898 * 299.99550 * 24 23 22 46 46 H 1.48504 * 110.00019 * 58.68329 * 25 23 22 47 47 H 1.48503 * 110.00152 * 180.02562 * 25 23 22 48 48 H 1.07992 * 120.11975 * 179.74407 * 27 18 17 49 49 H 1.09003 * 113.61340 * 139.98455 * 28 8 7 50 50 H 1.09002 * 113.61703 * 270.88636 * 28 8 7 51 51 H 1.08009 * 119.99560 * 180.27568 * 29 4 3 52 52 H 1.07994 * 120.00253 * 180.02562 * 30 29 4 53 53 H 1.07997 * 119.99730 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1969 0.0000 4 6 3.5807 1.1968 -0.0057 5 6 4.3342 2.5018 -0.0116 6 1 3.6926 3.3602 -0.2105 7 6 5.2525 2.6884 1.2078 8 6 6.2812 3.2984 0.2411 9 1 7.3081 2.9986 0.4502 10 7 6.1356 4.7455 0.0655 11 6 7.1957 5.4889 -0.3086 12 8 8.2728 4.9586 -0.5008 13 6 7.0489 6.9465 -0.4860 14 6 8.1498 7.7224 -0.8757 15 8 9.3529 7.1333 -1.0898 16 6 8.0086 9.0933 -1.0423 17 6 6.7892 9.6967 -0.8257 18 6 5.6843 8.9326 -0.4368 19 6 4.3787 9.5857 -0.2053 20 6 4.1167 10.9133 -0.3347 21 6 2.7531 11.0903 -0.0243 22 6 2.2580 9.8762 0.2846 23 6 0.8350 9.5835 0.6851 24 8 0.5156 10.3101 1.8734 25 14 0.6422 7.7579 1.0027 26 8 3.2421 8.9688 0.1709 27 6 5.8155 7.5581 -0.2622 28 6 5.6104 2.4725 -0.8692 29 6 4.2717 -0.0002 -0.0004 30 6 3.5804 -1.1975 0.0054 31 6 2.1982 -1.1974 0.0053 32 1 -0.3633 0.0051 1.0277 33 1 -0.3633 0.8876 -0.5182 34 1 -0.3633 -0.8924 -0.5095 35 1 1.6582 2.1322 0.0004 36 1 5.5780 1.7501 1.6569 37 1 4.8671 3.3981 1.9399 38 1 5.2762 5.1685 0.2185 39 1 9.9140 7.0879 -0.3036 40 1 8.8579 9.6890 -1.3429 41 1 6.6861 10.7638 -0.9567 42 1 4.8171 11.6831 -0.6231 43 1 2.2087 12.0231 -0.0310 44 1 0.1622 9.8857 -0.1175 45 1 1.0758 10.0915 2.6307 46 1 1.5770 7.3271 2.0732 47 1 -0.7571 7.4561 1.3980 48 1 4.9646 6.9668 0.0421 49 1 5.5140 3.0077 -1.8139 50 1 6.0338 1.4751 -0.9879 51 1 5.3518 -0.0002 -0.0004 52 1 4.1203 -2.1328 0.0099 53 1 1.6582 -2.1327 0.0094 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650858_13259648.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:51:02 Heat of formation + Delta-G solvation = -6.139766 kcal Electronic energy + Delta-G solvation = -37339.222531 eV Core-core repulsion = 32496.278873 eV Total energy + Delta-G solvation = -4842.943657 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.166 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.69101 -41.84855 -41.00368 -39.82884 -38.70249 -38.19725 -37.81927 -34.89728 -34.16972 -33.41444 -32.75323 -32.44076 -31.53106 -30.03921 -27.78397 -26.68777 -26.48624 -26.38645 -25.11285 -23.59931 -23.05482 -22.99250 -22.15763 -21.73549 -21.21622 -19.96821 -19.51164 -19.17931 -18.41962 -17.82425 -17.53236 -17.48343 -17.13494 -16.73386 -16.59225 -16.36541 -16.18794 -16.03621 -15.81401 -15.77318 -15.44135 -15.07098 -14.75228 -14.70424 -14.48492 -14.34911 -14.25617 -13.99172 -13.94463 -13.80529 -13.75625 -13.53164 -13.45189 -13.21326 -13.11842 -13.01569 -12.87775 -12.78308 -12.65761 -12.14658 -12.14063 -11.88974 -11.69334 -11.63637 -11.16931 -11.06274 -10.93495 -10.81551 -10.46309 -10.31762 -10.06887 -9.66062 -9.42912 -8.89861 -4.96235 -0.55883 -0.20916 0.43612 0.50211 0.77211 1.16328 1.47542 1.49363 1.70765 1.85825 1.92350 1.97437 2.62536 2.80442 3.11486 3.21387 3.29845 3.44096 3.49528 3.64766 3.68837 3.71790 3.90681 3.93800 4.02118 4.02367 4.06323 4.08422 4.19114 4.22429 4.27969 4.35875 4.45042 4.50994 4.56103 4.62849 4.65422 4.66852 4.75863 4.76811 4.81053 4.81564 4.83528 4.89541 4.92894 5.00028 5.02553 5.04382 5.12632 5.15662 5.20519 5.21459 5.32128 5.44926 5.50741 5.52113 5.60065 5.72451 5.76101 5.98455 6.15354 6.35292 6.40426 6.72873 7.10838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.129 4.129 4 C -0.072 4.072 5 C -0.066 4.066 6 H 0.111 0.889 7 C -0.125 4.125 8 C 0.117 3.883 9 H 0.089 0.911 10 N -0.699 5.699 11 C 0.560 3.440 12 O -0.557 6.557 13 C -0.179 4.179 14 C 0.164 3.836 15 O -0.495 6.495 16 C -0.147 4.147 17 C -0.045 4.045 18 C -0.041 4.041 19 C 0.024 3.976 20 C -0.190 4.190 21 C -0.183 4.183 22 C -0.053 4.053 23 C -0.039 4.039 24 O -0.535 6.535 25 Si 0.768 3.232 26 O -0.171 6.171 27 C -0.050 4.050 28 C -0.142 4.142 29 C -0.134 4.134 30 C -0.126 4.126 31 C -0.141 4.141 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.135 0.865 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.411 0.589 39 H 0.410 0.590 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.174 0.826 43 H 0.161 0.839 44 H 0.151 0.849 45 H 0.390 0.610 46 H -0.284 1.284 47 H -0.285 1.285 48 H 0.150 0.850 49 H 0.066 0.934 50 H 0.096 0.904 51 H 0.130 0.870 52 H 0.132 0.868 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 2.535 0.784 3.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.072 4.072 5 C -0.084 4.084 6 H 0.129 0.871 7 C -0.163 4.163 8 C 0.012 3.988 9 H 0.107 0.893 10 N -0.351 5.351 11 C 0.348 3.652 12 O -0.436 6.436 13 C -0.183 4.183 14 C 0.118 3.882 15 O -0.308 6.308 16 C -0.165 4.165 17 C -0.063 4.063 18 C -0.041 4.041 19 C -0.026 4.026 20 C -0.209 4.209 21 C -0.202 4.202 22 C -0.103 4.103 23 C -0.148 4.148 24 O -0.344 6.344 25 Si 0.671 3.329 26 O -0.069 6.069 27 C -0.069 4.069 28 C -0.180 4.180 29 C -0.152 4.152 30 C -0.143 4.143 31 C -0.159 4.159 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.153 0.847 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.249 0.751 39 H 0.271 0.729 40 H 0.181 0.819 41 H 0.182 0.818 42 H 0.191 0.809 43 H 0.178 0.822 44 H 0.168 0.832 45 H 0.240 0.760 46 H -0.210 1.210 47 H -0.211 1.211 48 H 0.167 0.833 49 H 0.085 0.915 50 H 0.115 0.885 51 H 0.148 0.852 52 H 0.150 0.850 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.007 1.410 0.348 3.339 hybrid contribution 0.242 0.806 1.416 1.648 sum -2.764 2.216 1.765 3.958 Atomic orbital electron populations 1.20839 0.90097 1.03467 1.02828 1.20231 0.97132 0.93299 0.99030 1.21199 0.93792 0.98230 1.01468 1.19818 0.93570 0.94786 0.99063 1.21599 0.94725 0.95184 0.96937 0.87066 1.23373 0.94798 1.01993 0.96127 1.21851 1.00209 0.79347 0.97412 0.89313 1.45513 1.12817 1.07530 1.69239 1.18252 0.83962 0.86644 0.76328 1.90809 1.27757 1.73846 1.51227 1.20235 0.95804 0.93250 1.08977 1.18893 0.85700 0.90564 0.93085 1.84707 1.25811 1.80995 1.39330 1.21574 0.99665 0.92827 1.02428 1.21420 0.89791 1.01553 0.93505 1.17692 0.89408 0.92720 1.04322 1.20418 0.85379 0.91265 1.05491 1.22155 0.97182 0.95530 1.06024 1.21785 0.95229 0.98853 1.04319 1.23040 0.91527 0.88278 1.07440 1.24523 0.88472 1.10877 0.90915 1.86643 1.61013 1.65764 1.20954 0.93712 0.77488 0.73904 0.87749 1.83899 1.17156 1.37752 1.68105 1.21408 0.96016 0.94084 0.95409 1.23541 0.95754 1.00997 0.97731 1.21190 1.00501 0.92111 1.01366 1.21382 0.94581 0.98738 0.99646 1.21300 0.94681 0.98215 1.01695 0.90725 0.90695 0.91170 0.84681 0.88130 0.89595 0.75091 0.72886 0.81878 0.81753 0.80880 0.82167 0.83154 0.76024 1.21039 1.21122 0.83276 0.91500 0.88536 0.85177 0.85010 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.24 10.01 71.24 0.71 0.96 16 2 C -0.10 -0.17 5.88 -19.87 -0.12 -0.28 16 3 C -0.13 -0.11 9.37 22.27 0.21 0.10 16 4 C -0.07 -0.04 5.29 -19.87 -0.11 -0.14 16 5 C -0.07 0.20 3.86 -11.01 -0.04 0.15 16 6 H 0.11 -0.64 8.09 -2.39 -0.02 -0.66 16 7 C -0.12 0.43 7.29 31.12 0.23 0.66 16 8 C 0.12 0.01 4.32 45.52 0.20 0.20 16 9 H 0.09 0.37 7.46 -2.38 -0.02 0.35 16 10 N -0.70 0.07 5.21 -443.18 -2.31 -2.24 16 11 C 0.56 3.36 7.76 86.71 0.67 4.03 16 12 O -0.56 -7.61 14.74 17.01 0.25 -7.36 16 13 C -0.18 -0.49 5.88 -20.04 -0.12 -0.61 16 14 C 0.16 0.44 6.72 22.89 0.15 0.60 16 15 O -0.49 -2.51 11.55 -68.70 -0.79 -3.30 16 16 C -0.15 0.37 9.96 22.30 0.22 0.59 16 17 C -0.04 0.19 9.54 22.55 0.22 0.40 16 18 C -0.04 0.06 5.87 -20.13 -0.12 -0.06 16 19 C 0.02 -0.01 7.03 24.27 0.17 0.16 16 20 C -0.19 0.36 10.26 22.40 0.23 0.59 16 21 C -0.18 0.14 10.77 22.13 0.24 0.38 16 22 C -0.05 0.05 6.22 24.87 0.15 0.21 16 23 C -0.04 0.13 2.98 71.24 0.21 0.34 16 24 O -0.54 0.39 12.87 -148.98 -1.92 -1.53 16 25 Si 0.77 -2.99 32.10 68.60 2.20 -0.78 16 26 O -0.17 0.03 8.78 -6.61 -0.06 -0.02 16 27 C -0.05 0.06 9.20 22.79 0.21 0.27 16 28 C -0.14 0.08 7.25 31.12 0.23 0.31 16 29 C -0.13 -0.17 8.61 22.27 0.19 0.02 16 30 C -0.13 -0.24 10.05 22.27 0.22 -0.02 16 31 C -0.14 -0.32 9.70 22.27 0.22 -0.10 16 32 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 33 H 0.07 -0.28 8.09 -2.38 -0.02 -0.30 16 34 H 0.07 -0.20 8.08 -2.39 -0.02 -0.22 16 35 H 0.14 -0.40 8.06 -2.91 -0.02 -0.43 16 36 H 0.10 -0.33 7.72 -2.39 -0.02 -0.35 16 37 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 38 H 0.41 -2.19 6.73 -92.71 -0.62 -2.81 16 39 H 0.41 -0.86 9.06 -74.06 -0.67 -1.53 16 40 H 0.16 -1.06 8.06 -2.91 -0.02 -1.09 16 41 H 0.16 -1.57 6.96 -2.91 -0.02 -1.60 16 42 H 0.17 -1.17 7.25 -2.91 -0.02 -1.19 16 43 H 0.16 -0.42 8.06 -2.91 -0.02 -0.44 16 44 H 0.15 -0.95 7.96 -2.39 -0.02 -0.97 16 45 H 0.39 -2.30 8.70 -74.06 -0.64 -2.94 16 46 H -0.28 -0.28 7.11 99.48 0.71 0.42 16 47 H -0.28 -0.63 7.11 99.48 0.71 0.08 16 48 H 0.15 -0.78 6.24 -2.91 -0.02 -0.80 16 49 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 50 H 0.10 -0.06 6.31 -2.39 -0.02 -0.08 16 51 H 0.13 -0.16 6.66 -2.91 -0.02 -0.18 16 52 H 0.13 -0.15 8.06 -2.91 -0.02 -0.18 16 53 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 Total: 0.00 -22.75 443.32 0.65 -22.10 By element: Atomic # 1 Polarization: -14.70 SS G_CDS: -0.91 Total: -15.61 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 4.18 Total: 8.75 kcal Atomic # 7 Polarization: 0.07 SS G_CDS: -2.31 Total: -2.24 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -2.52 Total: -12.21 kcal Atomic # 14 Polarization: -2.99 SS G_CDS: 2.20 Total: -0.78 kcal Total: -22.75 0.65 -22.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650858_13259648.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.957 kcal (2) G-P(sol) polarization free energy of solvation -22.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds