Wall clock time and date at job start Tue Mar 9 2021 12:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38209 * 119.99809 * 2 1 4 4 C 1.38252 * 119.99832 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.99971 * 179.97438 * 4 3 2 6 6 H 1.08996 * 112.84859 * 11.19480 * 5 4 3 7 7 C 1.54047 * 113.61956 * 142.50699 * 5 4 3 8 8 C 1.53779 * 86.98655 * 139.97819 * 7 5 4 9 9 H 1.08993 * 113.61380 * 219.97695 * 8 7 5 10 10 N 1.46504 * 113.61062 * 89.16053 * 8 7 5 11 11 C 1.34774 * 120.00018 * 105.86578 * 10 8 7 12 12 O 1.21584 * 119.99796 * 359.97438 * 11 10 8 13 13 C 1.47654 * 120.00505 * 179.97438 * 11 10 8 14 14 C 1.40175 * 119.96777 * 359.97438 * 13 11 10 15 15 C 1.36351 * 120.66581 * 179.72516 * 14 13 11 16 16 C 1.39327 * 120.23838 * 359.97438 * 15 14 13 17 17 N 1.37402 * 133.25200 * 179.97438 * 16 15 14 18 18 C 1.36862 * 109.98187 * 180.02562 * 17 16 15 19 19 C 1.34185 * 109.96908 * 0.02562 * 18 17 16 20 20 C 1.50695 * 126.54210 * 180.02562 * 19 18 17 21 21 O 1.42903 * 109.47118 * 104.95643 * 20 19 18 22 22 Si 1.86301 * 109.47079 * 344.95935 * 20 19 18 23 23 C 1.40913 * 119.64072 * 0.02562 * 16 15 14 24 24 C 1.39186 * 119.97672 * 179.72202 * 13 11 10 25 25 C 1.53781 * 87.17401 * 334.57196 * 8 7 5 26 26 C 1.38216 * 120.00599 * 0.25460 * 4 3 2 27 27 C 1.38268 * 119.99104 * 359.46726 * 26 4 3 28 28 C 1.38205 * 119.99906 * 0.55626 * 27 26 4 29 29 H 1.08995 * 109.46952 * 90.00541 * 1 2 3 30 30 H 1.09009 * 109.46645 * 210.00099 * 1 2 3 31 31 H 1.08998 * 109.46881 * 329.99772 * 1 2 3 32 32 H 1.08002 * 120.00247 * 359.97438 * 3 2 1 33 33 H 1.09001 * 113.61489 * 25.47132 * 7 5 4 34 34 H 1.09003 * 113.69359 * 254.49324 * 7 5 4 35 35 H 0.97001 * 119.99933 * 285.85913 * 10 8 7 36 36 H 1.08000 * 119.66295 * 359.74530 * 14 13 11 37 37 H 1.08002 * 119.87873 * 180.02562 * 15 14 13 38 38 H 0.96998 * 125.00417 * 0.02562 * 17 16 15 39 39 H 1.08000 * 125.01353 * 179.97438 * 18 17 16 40 40 H 1.09006 * 109.47615 * 224.96153 * 20 19 18 41 41 H 0.96695 * 113.99824 * 300.00314 * 21 20 19 42 42 H 1.48508 * 110.00097 * 179.97438 * 22 20 19 43 43 H 1.48504 * 110.00186 * 301.31747 * 22 20 19 44 44 H 1.07996 * 120.30103 * 0.27787 * 24 13 11 45 45 H 1.08998 * 113.61604 * 140.02152 * 25 8 7 46 46 H 1.08997 * 113.61038 * 270.92895 * 25 8 7 47 47 H 1.07990 * 120.00800 * 179.72467 * 26 4 3 48 48 H 1.07996 * 119.99375 * 180.27622 * 27 26 4 49 49 H 1.08004 * 119.99723 * 179.72568 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1970 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.3341 2.5021 -0.0011 6 1 3.6925 3.3613 0.1939 7 6 5.6129 2.4769 0.8575 8 6 6.2809 3.2975 -0.2584 9 1 7.3076 2.9969 -0.4665 10 7 6.1352 4.7455 -0.0895 11 6 7.1874 5.4865 0.3106 12 8 8.2575 4.9533 0.5317 13 6 7.0408 6.9459 0.4803 14 6 5.8070 7.5601 0.2247 15 6 5.6542 8.9059 0.3823 16 6 6.7272 9.6895 0.8014 17 7 6.8734 11.0343 1.0426 18 6 8.1546 11.3011 1.4431 19 6 8.8703 10.1666 1.4753 20 6 10.3200 10.0309 1.8637 21 8 10.4116 9.4600 3.1705 22 14 11.1230 11.7120 1.8629 23 6 7.9727 9.0840 1.0616 24 6 8.1264 7.7098 0.8990 25 6 5.2517 2.6831 -1.2218 26 6 4.2718 0.0001 -0.0064 27 6 3.5804 -1.1974 -0.0006 28 6 2.1984 -1.1973 -0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8901 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6581 2.1323 -0.0004 33 1 6.0369 1.4803 0.9801 34 1 5.5185 3.0168 1.7997 35 1 5.2814 5.1708 -0.2656 36 1 4.9689 6.9613 -0.0999 37 1 4.6978 9.3658 0.1821 38 1 6.1719 11.6968 0.9436 39 1 8.5338 12.2805 1.6951 40 1 10.8290 9.3848 1.1484 41 1 9.9793 9.9830 3.8594 42 1 12.5531 11.5920 2.2450 43 1 11.0065 12.3299 0.5176 44 1 9.0789 7.2408 1.0967 45 1 4.8660 3.3893 -1.9571 46 1 5.5772 1.7428 -1.6666 47 1 5.3517 0.0000 -0.0113 48 1 4.1205 -2.1326 -0.0006 49 1 1.6584 -2.1327 -0.0005 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650858_13287722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:51:06 Heat of formation + Delta-G solvation = 42.864996 kcal Electronic energy + Delta-G solvation = -30619.281423 eV Core-core repulsion = 26478.627385 eV Total energy + Delta-G solvation = -4140.654038 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.46652 -41.59708 -40.45964 -38.98788 -37.92184 -37.40271 -34.83247 -33.35867 -33.24732 -31.97457 -30.78771 -30.36905 -27.78484 -26.69833 -26.49439 -26.38516 -24.69615 -23.47978 -23.05035 -22.12293 -21.67072 -20.78083 -19.85427 -19.33977 -18.53027 -17.72301 -17.47158 -17.31444 -16.94099 -16.48970 -16.26873 -16.12146 -15.88727 -15.70909 -15.54198 -15.15113 -15.01825 -14.84274 -14.75760 -14.71493 -14.42570 -14.07967 -13.99760 -13.81809 -13.72108 -13.60837 -13.46647 -13.02457 -12.83844 -12.67604 -12.59580 -12.36826 -12.20287 -12.14354 -11.93289 -11.71430 -11.65099 -11.17956 -11.12878 -10.80797 -10.33100 -10.18492 -9.67056 -9.44181 -9.33188 -8.80915 -5.01317 -0.17581 0.19694 0.42593 0.49226 1.35289 1.52854 1.70758 1.80490 2.01302 2.04078 2.13363 2.79219 2.86524 3.44488 3.60074 3.62816 3.67081 3.67853 3.75143 3.85915 3.92010 3.93091 4.01144 4.07342 4.13120 4.19686 4.26868 4.36526 4.44390 4.49946 4.52593 4.56105 4.59183 4.64098 4.74726 4.74998 4.79264 4.81292 4.84169 4.92190 4.98801 4.99251 5.03357 5.13355 5.19776 5.25903 5.31223 5.33523 5.46196 5.54086 5.57523 5.59140 5.71450 5.75331 5.98053 6.14355 6.46989 6.60890 6.87435 7.14957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.128 4.128 4 C -0.073 4.073 5 C -0.062 4.062 6 H 0.112 0.888 7 C -0.143 4.143 8 C 0.114 3.886 9 H 0.081 0.919 10 N -0.693 5.693 11 C 0.562 3.438 12 O -0.589 6.589 13 C -0.179 4.179 14 C -0.068 4.068 15 C -0.124 4.124 16 C 0.111 3.889 17 N -0.571 5.571 18 C 0.088 3.912 19 C -0.228 4.228 20 C -0.054 4.054 21 O -0.565 6.565 22 Si 0.813 3.187 23 C -0.129 4.129 24 C -0.025 4.025 25 C -0.122 4.122 26 C -0.135 4.135 27 C -0.125 4.125 28 C -0.140 4.140 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.415 0.585 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.440 0.560 39 H 0.221 0.779 40 H 0.083 0.917 41 H 0.393 0.607 42 H -0.308 1.308 43 H -0.279 1.279 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.129 0.871 48 H 0.132 0.868 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.942 7.775 -0.251 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.073 4.073 5 C -0.081 4.081 6 H 0.131 0.869 7 C -0.182 4.182 8 C 0.008 3.992 9 H 0.099 0.901 10 N -0.345 5.345 11 C 0.352 3.648 12 O -0.470 6.470 13 C -0.183 4.183 14 C -0.088 4.088 15 C -0.144 4.144 16 C 0.001 3.999 17 N -0.175 5.175 18 C -0.039 4.039 19 C -0.235 4.235 20 C -0.163 4.163 21 O -0.373 6.373 22 Si 0.717 3.283 23 C -0.134 4.134 24 C -0.045 4.045 25 C -0.160 4.160 26 C -0.153 4.153 27 C -0.143 4.143 28 C -0.158 4.158 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.153 0.847 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.254 0.746 36 H 0.178 0.822 37 H 0.181 0.819 38 H 0.281 0.719 39 H 0.238 0.762 40 H 0.100 0.900 41 H 0.243 0.757 42 H -0.236 1.236 43 H -0.206 1.206 44 H 0.122 0.878 45 H 0.109 0.891 46 H 0.117 0.883 47 H 0.147 0.853 48 H 0.150 0.850 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.374 7.554 -0.774 10.585 hybrid contribution -0.150 -0.858 -0.350 0.938 sum -7.524 6.696 -1.124 10.135 Atomic orbital electron populations 1.20836 0.90023 1.03413 1.02890 1.20236 0.97172 0.93276 0.99004 1.21173 0.93702 0.98203 1.01464 1.19830 0.93610 0.94780 0.99081 1.21615 0.94511 0.95169 0.96763 0.86947 1.23593 0.95986 1.00899 0.97696 1.21861 1.00009 0.79642 0.97656 0.90055 1.45403 1.13617 1.07196 1.68256 1.18518 0.83430 0.87264 0.75601 1.90766 1.29006 1.74409 1.52841 1.19554 0.96284 0.91918 1.10547 1.20877 0.95565 0.94730 0.97591 1.20073 0.98042 0.92788 1.03500 1.18630 0.95423 0.84984 1.00859 1.41779 1.12128 1.06141 1.57404 1.22242 0.83180 0.99816 0.98706 1.20856 0.96880 0.92452 1.13293 1.24767 0.94762 1.10735 0.86010 1.86488 1.80028 1.54004 1.16799 0.94047 0.77740 0.74667 0.81855 1.19221 0.94842 0.92943 1.06386 1.20589 0.97762 0.92206 0.93906 1.23346 0.94524 1.01975 0.96124 1.21192 1.00456 0.92201 1.01424 1.21380 0.94621 0.98689 0.99637 1.21298 0.94626 0.98253 1.01658 0.90596 0.91156 0.90802 0.84741 0.88733 0.91632 0.74580 0.82214 0.81923 0.71868 0.76250 0.89987 0.75688 1.23626 1.20566 0.87822 0.89088 0.88264 0.85346 0.85031 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.22 10.01 71.24 0.71 0.94 16 2 C -0.10 -0.20 5.88 -19.87 -0.12 -0.32 16 3 C -0.13 -0.16 9.36 22.27 0.21 0.05 16 4 C -0.07 -0.09 5.29 -19.86 -0.11 -0.20 16 5 C -0.06 0.13 3.87 -10.92 -0.04 0.09 16 6 H 0.11 -0.59 8.09 -2.39 -0.02 -0.61 16 7 C -0.14 -0.17 7.27 31.21 0.23 0.05 16 8 C 0.11 0.25 4.30 45.52 0.20 0.45 16 9 H 0.08 0.60 7.50 -2.39 -0.02 0.58 16 10 N -0.69 -1.26 5.21 -443.08 -2.31 -3.57 16 11 C 0.56 5.69 7.76 86.73 0.67 6.37 16 12 O -0.59 -11.71 15.95 -3.98 -0.06 -11.77 16 13 C -0.18 -1.27 5.87 -20.09 -0.12 -1.39 16 14 C -0.07 0.09 9.46 22.30 0.21 0.30 16 15 C -0.12 0.39 10.00 22.09 0.22 0.61 16 16 C 0.11 0.01 7.27 39.19 0.28 0.30 16 17 N -0.57 3.77 6.05 -187.48 -1.13 2.64 16 18 C 0.09 -0.54 10.43 82.98 0.87 0.33 16 19 C -0.23 -0.44 5.58 -18.61 -0.10 -0.54 16 20 C -0.05 -0.16 3.06 71.23 0.22 0.05 16 21 O -0.57 -2.81 12.88 -148.98 -1.92 -4.73 16 22 Si 0.81 -2.46 30.76 68.60 2.11 -0.35 16 23 C -0.13 -0.85 6.34 -20.21 -0.13 -0.98 16 24 C -0.02 -0.28 9.64 22.74 0.22 -0.06 16 25 C -0.12 0.31 7.29 31.12 0.23 0.53 16 26 C -0.13 -0.30 8.60 22.27 0.19 -0.11 16 27 C -0.13 -0.33 10.05 22.27 0.22 -0.11 16 28 C -0.14 -0.38 9.70 22.27 0.22 -0.16 16 29 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.07 -0.19 8.09 -2.38 -0.02 -0.21 16 31 H 0.07 -0.25 8.09 -2.39 -0.02 -0.27 16 32 H 0.13 -0.34 8.05 -2.91 -0.02 -0.36 16 33 H 0.09 0.12 6.33 -2.39 -0.02 0.11 16 34 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.42 -2.20 6.71 -92.71 -0.62 -2.82 16 36 H 0.16 -1.42 6.36 -2.91 -0.02 -1.43 16 37 H 0.16 -1.68 8.06 -2.91 -0.02 -1.70 16 38 H 0.44 -6.12 8.96 -92.71 -0.83 -6.96 16 39 H 0.22 -3.38 6.35 -2.91 -0.02 -3.40 16 40 H 0.08 0.64 7.96 -2.38 -0.02 0.62 16 41 H 0.39 -1.86 8.70 -74.06 -0.64 -2.51 16 42 H -0.31 -1.81 7.11 99.48 0.71 -1.10 16 43 H -0.28 -0.21 7.11 99.48 0.71 0.50 16 44 H 0.10 1.71 7.64 -2.91 -0.02 1.68 16 45 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 46 H 0.10 -0.21 7.71 -2.39 -0.02 -0.23 16 47 H 0.13 0.01 6.68 -2.92 -0.02 -0.01 16 48 H 0.13 -0.05 8.06 -2.91 -0.02 -0.08 16 49 H 0.13 -0.02 8.06 -2.91 -0.02 -0.04 16 Total: 0.00 -30.26 403.92 -0.08 -30.34 By element: Atomic # 1 Polarization: -17.72 SS G_CDS: -1.04 Total: -18.76 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 4.28 Total: 6.21 kcal Atomic # 7 Polarization: 2.52 SS G_CDS: -3.44 Total: -0.93 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -1.98 Total: -16.50 kcal Atomic # 14 Polarization: -2.46 SS G_CDS: 2.11 Total: -0.35 kcal Total: -30.26 -0.08 -30.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650858_13287722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.203 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds