Wall clock time and date at job start Tue Mar 9 2021 12:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38211 * 120.00193 * 2 1 4 4 C 1.38255 * 120.00108 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00466 * 180.02562 * 4 3 2 6 6 H 1.09001 * 112.90073 * 348.74759 * 5 4 3 7 7 C 1.53773 * 113.61949 * 119.99964 * 5 4 3 8 8 C 1.53779 * 87.08455 * 139.98370 * 7 5 4 9 9 H 1.09000 * 113.61289 * 219.93781 * 8 7 5 10 10 N 1.46502 * 113.61486 * 89.11612 * 8 7 5 11 11 C 1.34774 * 119.99884 * 155.00101 * 10 8 7 12 12 O 1.21513 * 120.00239 * 359.97438 * 11 10 8 13 13 C 1.48172 * 119.99625 * 179.97438 * 11 10 8 14 14 N 1.32718 * 119.72668 * 359.97438 * 13 11 10 15 15 C 1.31515 * 121.64155 * 180.02562 * 14 13 11 16 16 C 1.38556 * 120.90641 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.32394 * 179.97438 * 16 15 14 18 18 O 1.42901 * 109.47199 * 245.01819 * 17 16 15 19 19 Si 1.86299 * 109.47290 * 5.01660 * 17 16 15 20 20 C 1.38623 * 119.35381 * 359.97438 * 16 15 14 21 21 C 1.38595 * 118.48634 * 0.02562 * 20 16 15 22 22 C 1.53781 * 113.61726 * 217.50244 * 5 4 3 23 23 C 1.38218 * 119.99914 * 0.27400 * 4 3 2 24 24 C 1.38259 * 120.00146 * 359.52144 * 23 4 3 25 25 C 1.38211 * 119.99365 * 0.45472 * 24 23 4 26 26 H 1.09002 * 109.47239 * 89.99495 * 1 2 3 27 27 H 1.08999 * 109.47399 * 209.99757 * 1 2 3 28 28 H 1.08996 * 109.46876 * 330.00315 * 1 2 3 29 29 H 1.07998 * 120.00236 * 0.02562 * 3 2 1 30 30 H 1.09006 * 113.61370 * 25.42708 * 7 5 4 31 31 H 1.09006 * 113.68647 * 254.54614 * 7 5 4 32 32 H 0.97003 * 119.99950 * 335.00086 * 10 8 7 33 33 H 1.08001 * 119.54643 * 180.02562 * 15 14 13 34 34 H 1.09004 * 109.47386 * 125.02101 * 17 16 15 35 35 H 0.96696 * 114.00321 * 180.02562 * 18 17 16 36 36 H 1.48499 * 109.99976 * 178.67833 * 19 17 16 37 37 H 1.48499 * 110.00057 * 300.00431 * 19 17 16 38 38 H 1.07998 * 120.76123 * 179.97438 * 20 16 15 39 39 H 1.08000 * 120.46738 * 179.72634 * 21 20 16 40 40 H 1.08991 * 113.62140 * 105.46552 * 22 5 4 41 41 H 1.09004 * 113.60966 * 334.55851 * 22 5 4 42 42 H 1.08004 * 120.00139 * 179.72273 * 23 4 3 43 43 H 1.07998 * 120.00538 * 180.24936 * 24 23 4 44 44 H 1.08008 * 119.99829 * 179.79284 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1969 0.0000 4 6 3.5806 1.1969 0.0005 5 6 4.3342 2.5019 0.0011 6 1 3.6936 3.3618 -0.1949 7 6 5.2519 2.6829 1.2217 8 6 6.2810 3.2973 0.2583 9 1 7.3078 2.9965 0.4664 10 7 6.1355 4.7452 0.0894 11 6 7.1956 5.4905 -0.2808 12 8 8.2724 4.9615 -0.4741 13 6 7.0482 6.9548 -0.4522 14 7 5.8695 7.5268 -0.2402 15 6 5.6962 8.8228 -0.3817 16 6 6.7458 9.6441 -0.7607 17 6 6.5323 11.1274 -0.9195 18 8 6.7188 11.4916 -2.2886 19 14 4.8005 11.5656 -0.3907 20 6 7.9943 9.0879 -0.9923 21 6 8.1478 7.7195 -0.8355 22 6 5.6106 2.4766 -0.8562 23 6 4.2717 -0.0001 -0.0047 24 6 3.5804 -1.1975 -0.0004 25 6 2.1983 -1.1974 -0.0004 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6581 2.1322 0.0004 30 1 5.5772 1.7425 1.6666 31 1 4.8672 3.3887 1.9579 32 1 5.2760 5.1676 0.2440 33 1 4.7222 9.2528 -0.2000 34 1 7.2488 11.6661 -0.2994 35 1 6.5970 12.4345 -2.4649 36 1 4.5876 13.0303 -0.5124 37 1 3.8140 10.8376 -1.2286 38 1 8.8282 9.7068 -1.2890 39 1 9.1052 7.2521 -1.0120 40 1 5.5147 3.0162 -1.7983 41 1 6.0341 1.4798 -0.9794 42 1 5.3517 -0.0002 -0.0088 43 1 4.1203 -2.1328 -0.0004 44 1 1.6582 -2.1327 -0.0005 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650858_13287726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:51:09 Heat of formation + Delta-G solvation = 25.351543 kcal Electronic energy + Delta-G solvation = -25865.679222 eV Core-core repulsion = 22136.255644 eV Total energy + Delta-G solvation = -3729.423578 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.01445 -41.27277 -40.16545 -38.88368 -37.94643 -34.97492 -33.88933 -33.24970 -33.00583 -31.79786 -28.12100 -27.72021 -26.69499 -26.09494 -25.02886 -23.86347 -23.05111 -22.23545 -21.80170 -19.87393 -19.35837 -18.65063 -18.15677 -17.68475 -16.99032 -16.87456 -16.44960 -16.37431 -16.21276 -15.92585 -15.49490 -15.38418 -14.98829 -14.74305 -14.65164 -14.53058 -14.22391 -14.02780 -13.98621 -13.95107 -13.75516 -13.45094 -13.03107 -12.78415 -12.69263 -12.54789 -12.17255 -12.10884 -11.73063 -11.66206 -11.47505 -11.18336 -11.07967 -10.81801 -10.54075 -10.35353 -10.09507 -9.67145 -9.43676 -4.93134 -0.61688 0.06788 0.42880 0.49294 1.23518 1.49626 1.59962 1.88609 1.94759 2.60601 2.79784 2.90250 3.26811 3.44744 3.60139 3.64440 3.67061 3.71814 3.78737 3.88780 3.92755 4.01046 4.07610 4.17010 4.19024 4.27091 4.37988 4.49899 4.54428 4.57087 4.61688 4.73973 4.75696 4.79734 4.81560 4.88716 4.92140 4.98434 4.99067 5.02935 5.12728 5.19451 5.31068 5.36042 5.48605 5.59437 5.71324 5.75187 6.14496 6.24261 6.53922 6.59148 7.00830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.073 4.073 5 C -0.067 4.067 6 H 0.104 0.896 7 C -0.122 4.122 8 C 0.113 3.887 9 H 0.094 0.906 10 N -0.682 5.682 11 C 0.573 3.427 12 O -0.564 6.564 13 C 0.062 3.938 14 N -0.459 5.459 15 C 0.099 3.901 16 C -0.103 4.103 17 C -0.082 4.082 18 O -0.557 6.557 19 Si 0.761 3.239 20 C -0.054 4.054 21 C -0.115 4.115 22 C -0.141 4.141 23 C -0.133 4.133 24 C -0.124 4.124 25 C -0.140 4.140 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.419 0.581 33 H 0.183 0.817 34 H 0.110 0.890 35 H 0.400 0.600 36 H -0.281 1.281 37 H -0.292 1.292 38 H 0.164 0.836 39 H 0.152 0.848 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 3.901 3.401 5.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.073 4.073 5 C -0.085 4.085 6 H 0.122 0.878 7 C -0.160 4.160 8 C 0.007 3.993 9 H 0.112 0.888 10 N -0.333 5.333 11 C 0.358 3.642 12 O -0.443 6.443 13 C -0.076 4.076 14 N -0.170 5.170 15 C -0.061 4.061 16 C -0.105 4.105 17 C -0.191 4.191 18 O -0.368 6.368 19 Si 0.666 3.334 20 C -0.079 4.079 21 C -0.136 4.136 22 C -0.180 4.180 23 C -0.151 4.151 24 C -0.142 4.142 25 C -0.158 4.158 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.148 0.852 30 H 0.123 0.877 31 H 0.105 0.895 32 H 0.257 0.743 33 H 0.199 0.801 34 H 0.128 0.872 35 H 0.251 0.749 36 H -0.208 1.208 37 H -0.219 1.219 38 H 0.181 0.819 39 H 0.169 0.831 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.252 2.650 3.244 5.303 hybrid contribution 0.799 1.260 -1.381 2.033 sum -2.453 3.910 1.864 4.978 Atomic orbital electron populations 1.20835 0.90129 1.03452 1.02796 1.20223 0.97126 0.93292 0.99085 1.21167 0.93886 0.98118 1.01685 1.19819 0.93522 0.94831 0.99114 1.21561 0.94733 0.95010 0.97192 0.87797 1.23354 0.94517 1.02076 0.96021 1.21964 1.00574 0.79062 0.97668 0.88764 1.45466 1.13070 1.07376 1.67365 1.18059 0.83971 0.85665 0.76464 1.90784 1.27892 1.73242 1.52341 1.21075 0.90995 0.93981 1.01507 1.67503 1.23128 1.13270 1.13116 1.22969 0.99332 0.88158 0.95620 1.20787 0.94621 0.96427 0.98708 1.24921 1.14467 0.92913 0.86835 1.86535 1.92949 1.32404 1.24872 0.94168 0.72274 0.78099 0.88883 1.21766 0.98150 0.94033 0.93972 1.22297 1.00203 0.94540 0.96560 1.23554 0.95758 1.01133 0.97526 1.21202 1.00601 0.91976 1.01276 1.21399 0.94535 0.98769 0.99488 1.21307 0.94733 0.98142 1.01622 0.90799 0.90957 0.90890 0.85203 0.87722 0.89519 0.74252 0.80057 0.87242 0.74864 1.20806 1.21903 0.81852 0.83074 0.91795 0.88055 0.84914 0.84768 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.12 10.01 71.23 0.71 0.83 16 2 C -0.10 -0.27 5.88 -19.87 -0.12 -0.39 16 3 C -0.13 -0.33 9.37 22.27 0.21 -0.12 16 4 C -0.07 -0.14 5.29 -19.87 -0.11 -0.24 16 5 C -0.07 0.07 3.86 -11.02 -0.04 0.03 16 6 H 0.10 -0.23 8.10 -2.39 -0.02 -0.25 16 7 C -0.12 0.27 7.29 31.12 0.23 0.50 16 8 C 0.11 0.16 4.32 45.52 0.20 0.36 16 9 H 0.09 0.42 7.46 -2.39 -0.02 0.40 16 10 N -0.68 -1.92 5.25 -442.60 -2.32 -4.25 16 11 C 0.57 4.62 7.81 86.88 0.68 5.30 16 12 O -0.56 -8.05 15.92 -3.76 -0.06 -8.11 16 13 C 0.06 0.35 6.75 41.91 0.28 0.64 16 14 N -0.46 -1.58 9.54 -184.92 -1.76 -3.34 16 15 C 0.10 0.01 9.84 84.82 0.83 0.84 16 16 C -0.10 0.08 5.40 -19.70 -0.11 -0.03 16 17 C -0.08 0.41 2.81 71.24 0.20 0.61 16 18 O -0.56 1.07 12.82 -148.98 -1.91 -0.84 16 19 Si 0.76 -4.58 29.87 68.60 2.05 -2.53 16 20 C -0.05 -0.01 9.83 22.45 0.22 0.22 16 21 C -0.12 -0.43 9.63 22.61 0.22 -0.21 16 22 C -0.14 -0.10 7.25 31.12 0.23 0.13 16 23 C -0.13 -0.25 8.62 22.27 0.19 -0.05 16 24 C -0.12 -0.28 10.05 22.27 0.22 -0.06 16 25 C -0.14 -0.39 9.70 22.27 0.22 -0.18 16 26 H 0.07 -0.13 8.14 -2.39 -0.02 -0.14 16 27 H 0.07 -0.16 8.09 -2.39 -0.02 -0.18 16 28 H 0.07 -0.17 8.08 -2.39 -0.02 -0.19 16 29 H 0.13 -0.05 8.06 -2.91 -0.02 -0.08 16 30 H 0.10 -0.30 7.73 -2.38 -0.02 -0.32 16 31 H 0.09 -0.30 8.14 -2.38 -0.02 -0.32 16 32 H 0.42 -0.12 8.03 -92.71 -0.74 -0.87 16 33 H 0.18 -0.86 4.88 -2.91 -0.01 -0.87 16 34 H 0.11 -1.07 7.96 -2.38 -0.02 -1.09 16 35 H 0.40 -3.93 8.74 -74.06 -0.65 -4.58 16 36 H -0.28 0.45 7.11 99.48 0.71 1.16 16 37 H -0.29 -0.30 7.05 99.48 0.70 0.40 16 38 H 0.16 -0.65 8.06 -2.91 -0.02 -0.67 16 39 H 0.15 0.51 7.64 -2.91 -0.02 0.48 16 40 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.10 -0.03 6.30 -2.39 -0.02 -0.04 16 42 H 0.13 -0.15 6.64 -2.91 -0.02 -0.17 16 43 H 0.13 -0.16 8.06 -2.91 -0.02 -0.18 16 44 H 0.13 -0.02 8.06 -2.91 -0.02 -0.05 16 Total: 0.00 -18.22 367.60 -0.06 -18.28 By element: Atomic # 1 Polarization: -7.06 SS G_CDS: -0.32 Total: -7.38 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 4.27 Total: 8.18 kcal Atomic # 7 Polarization: -3.50 SS G_CDS: -4.09 Total: -7.59 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -1.97 Total: -8.96 kcal Atomic # 14 Polarization: -4.58 SS G_CDS: 2.05 Total: -2.53 kcal Total: -18.22 -0.06 -18.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650858_13287726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.628 kcal (2) G-P(sol) polarization free energy of solvation -18.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds