Wall clock time and date at job start Tue Mar 9 2021 12:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38219 * 119.99857 * 2 1 4 4 C 1.38253 * 119.99573 * 180.29030 * 3 2 1 5 5 C 1.50704 * 119.99914 * 179.74124 * 4 3 2 6 6 H 1.08996 * 112.84732 * 348.53298 * 5 4 3 7 7 C 1.53780 * 113.61215 * 119.73342 * 5 4 3 8 8 C 1.53778 * 87.08427 * 139.98260 * 7 5 4 9 9 H 1.08995 * 113.61814 * 219.93499 * 8 7 5 10 10 N 1.46497 * 113.61664 * 89.11213 * 8 7 5 11 11 C 1.34779 * 120.00122 * 156.53214 * 10 8 7 12 12 O 1.21582 * 120.00010 * 359.97438 * 11 10 8 13 13 C 1.47602 * 119.99793 * 179.97438 * 11 10 8 14 14 C 1.39713 * 120.08460 * 180.02562 * 13 11 10 15 15 C 1.37722 * 119.90991 * 179.97438 * 14 13 11 16 16 C 1.50707 * 119.95505 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.47083 * 105.00210 * 16 15 14 18 18 Si 1.86298 * 109.47014 * 344.99973 * 16 15 14 19 19 C 1.38969 * 120.09093 * 359.97438 * 15 14 13 20 20 O 1.35712 * 119.91630 * 179.97438 * 19 15 14 21 21 C 1.39019 * 120.17358 * 359.79009 * 19 15 14 22 22 C 1.50707 * 119.95639 * 180.25776 * 21 19 15 23 23 C 1.37679 * 120.09052 * 0.46546 * 21 19 15 24 24 C 1.53786 * 87.17076 * 334.52361 * 8 7 5 25 25 C 1.38219 * 119.99994 * 359.47761 * 4 3 2 26 26 C 1.38257 * 120.00107 * 0.24572 * 25 4 3 27 27 C 1.38218 * 119.99737 * 0.02562 * 26 25 4 28 28 H 1.08995 * 109.47715 * 270.23622 * 1 2 3 29 29 H 1.09011 * 109.46815 * 30.23666 * 1 2 3 30 30 H 1.09002 * 109.47004 * 150.23493 * 1 2 3 31 31 H 1.07995 * 120.00198 * 0.03799 * 3 2 1 32 32 H 1.08995 * 113.61577 * 25.42893 * 7 5 4 33 33 H 1.09004 * 113.60927 * 254.52789 * 7 5 4 34 34 H 0.96999 * 119.99940 * 336.52748 * 10 8 7 35 35 H 1.08003 * 120.04731 * 359.96141 * 14 13 11 36 36 H 1.09007 * 109.46535 * 224.99989 * 16 15 14 37 37 H 0.96702 * 113.99322 * 299.99796 * 17 16 15 38 38 H 1.48490 * 110.00111 * 58.68115 * 18 16 15 39 39 H 1.48501 * 109.99716 * 180.02562 * 18 16 15 40 40 H 0.96704 * 114.00203 * 89.99517 * 20 19 15 41 41 H 1.09000 * 109.46984 * 270.20685 * 22 21 19 42 42 H 1.09000 * 109.47171 * 30.20328 * 22 21 19 43 43 H 1.08993 * 109.47264 * 150.20824 * 22 21 19 44 44 H 1.08002 * 120.04953 * 179.79649 * 23 21 19 45 45 H 1.08996 * 113.61543 * 140.02220 * 24 8 7 46 46 H 1.09004 * 113.61385 * 270.92620 * 24 8 7 47 47 H 1.08000 * 119.99564 * 180.27248 * 25 4 3 48 48 H 1.07995 * 119.99660 * 180.02562 * 26 25 4 49 49 H 1.07999 * 119.99736 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1970 0.0000 4 6 3.5806 1.1970 -0.0061 5 6 4.3342 2.5021 -0.0120 6 1 3.6924 3.3604 -0.2105 7 6 5.2527 2.6885 1.2072 8 6 6.2812 3.2986 0.2403 9 1 7.3081 2.9988 0.4491 10 7 6.1355 4.7457 0.0650 11 6 7.1875 5.4849 -0.3391 12 8 8.2576 4.9508 -0.5577 13 6 7.0404 6.9429 -0.5163 14 6 8.1296 7.7108 -0.9357 15 6 7.9882 9.0708 -1.1003 16 6 9.1623 9.9001 -1.5532 17 8 8.9886 10.2628 -2.9244 18 14 10.7300 8.9111 -1.3662 19 6 6.7641 9.6794 -0.8504 20 8 6.6289 11.0199 -1.0133 21 6 5.6766 8.9180 -0.4377 22 6 4.3498 9.5822 -0.1737 23 6 5.8112 7.5587 -0.2657 24 6 5.6123 2.4729 -0.8714 25 6 4.2717 -0.0001 -0.0012 26 6 3.5804 -1.1974 0.0046 27 6 2.1982 -1.1973 0.0050 28 1 -0.3634 0.0042 1.0276 29 1 -0.3633 0.8880 -0.5176 30 1 -0.3633 -0.8921 -0.5102 31 1 1.6581 2.1323 0.0006 32 1 5.5784 1.7502 1.6560 33 1 4.8675 3.3980 1.9396 34 1 5.2818 5.1719 0.2397 35 1 9.0813 7.2386 -1.1303 36 1 9.2266 10.8018 -0.9441 37 1 8.9234 9.5082 -3.5256 38 1 10.6420 7.6635 -2.1666 39 1 11.8954 9.7181 -1.8090 40 1 6.3552 11.2824 -1.9029 41 1 4.3004 9.8931 0.8698 42 1 4.2459 10.4552 -0.8181 43 1 3.5436 8.8789 -0.3818 44 1 4.9667 6.9683 0.0581 45 1 5.5173 3.0085 -1.8160 46 1 6.0362 1.4757 -0.9898 47 1 5.3517 0.0000 -0.0015 48 1 4.1204 -2.1326 0.0088 49 1 1.6582 -2.1326 0.0091 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9650858_13287732.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:51:16 Heat of formation + Delta-G solvation = -37.109850 kcal Electronic energy + Delta-G solvation = -30377.343936 eV Core-core repulsion = 26236.417928 eV Total energy + Delta-G solvation = -4140.926007 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.91125 -41.27938 -40.22248 -38.92110 -37.95611 -37.49335 -34.88535 -34.05411 -33.41282 -32.21340 -31.35953 -28.13487 -27.87048 -27.00199 -26.78506 -26.34642 -24.68727 -23.09155 -22.33140 -21.92462 -21.57338 -19.95423 -19.59817 -18.86015 -18.14898 -17.70070 -17.37052 -16.88968 -16.61194 -16.37724 -16.14840 -16.06121 -15.85725 -15.78708 -15.37357 -15.02118 -14.82306 -14.75891 -14.44935 -14.40888 -14.14936 -14.05901 -13.88499 -13.81977 -13.56049 -13.33686 -13.13674 -13.10047 -12.94623 -12.77822 -12.70197 -12.41224 -12.21762 -11.77642 -11.74089 -11.72009 -11.67501 -11.23214 -10.99378 -10.60293 -10.18260 -10.03502 -9.70085 -9.68931 -9.46087 -4.93504 -0.41621 0.02620 0.41148 0.47815 1.26028 1.61916 1.63010 1.96206 1.96597 2.54387 2.77342 3.04514 3.30020 3.35760 3.44318 3.49094 3.59214 3.61282 3.67369 3.84296 3.90609 3.94327 4.00495 4.08580 4.14605 4.20689 4.24211 4.42286 4.46409 4.48992 4.50522 4.57030 4.58484 4.63061 4.65202 4.68107 4.71201 4.75755 4.84836 4.92474 4.93824 4.95640 5.01406 5.05530 5.07462 5.14514 5.23046 5.23208 5.44736 5.51766 5.57207 5.68275 5.71732 6.10281 6.32649 6.37691 6.53597 7.12653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.084 4.084 3 C -0.118 4.118 4 C -0.068 4.068 5 C -0.073 4.073 6 H 0.096 0.904 7 C -0.134 4.134 8 C 0.119 3.881 9 H 0.107 0.893 10 N -0.709 5.709 11 C 0.564 3.436 12 O -0.530 6.530 13 C -0.138 4.138 14 C -0.053 4.053 15 C -0.148 4.148 16 C -0.067 4.067 17 O -0.528 6.528 18 Si 0.684 3.316 19 C 0.162 3.838 20 O -0.487 6.487 21 C -0.118 4.118 22 C -0.110 4.110 23 C -0.065 4.065 24 C -0.144 4.144 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.125 4.125 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.400 0.600 35 H 0.146 0.854 36 H 0.124 0.876 37 H 0.375 0.625 38 H -0.255 1.255 39 H -0.253 1.253 40 H 0.398 0.602 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.131 0.869 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.984 -0.552 1.655 5.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.136 4.136 4 C -0.068 4.068 5 C -0.092 4.092 6 H 0.114 0.886 7 C -0.172 4.172 8 C 0.014 3.986 9 H 0.125 0.875 10 N -0.361 5.361 11 C 0.352 3.648 12 O -0.407 6.407 13 C -0.142 4.142 14 C -0.072 4.072 15 C -0.149 4.149 16 C -0.177 4.177 17 O -0.335 6.335 18 Si 0.585 3.415 19 C 0.116 3.884 20 O -0.299 6.299 21 C -0.118 4.118 22 C -0.167 4.167 23 C -0.084 4.084 24 C -0.182 4.182 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.143 4.143 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.236 0.764 35 H 0.163 0.837 36 H 0.142 0.858 37 H 0.223 0.777 38 H -0.179 1.179 39 H -0.177 1.177 40 H 0.256 0.744 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.149 0.851 45 H 0.093 0.907 46 H 0.115 0.885 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.325 -0.660 1.926 3.899 hybrid contribution -1.275 0.003 -1.422 1.910 sum -4.600 -0.657 0.504 4.674 Atomic orbital electron populations 1.20819 0.91128 1.02916 1.02480 1.19949 0.96152 0.93167 0.99115 1.20924 0.93506 0.97563 1.01565 1.19646 0.93379 0.94339 0.99429 1.21637 0.95017 0.95234 0.97280 0.88611 1.23417 0.95599 1.01992 0.96222 1.21881 1.00830 0.79345 0.96542 0.87483 1.45572 1.13665 1.07603 1.69217 1.18138 0.83828 0.86295 0.76571 1.90816 1.26691 1.73138 1.50007 1.19785 0.94916 0.93099 1.06351 1.21162 0.98929 0.92159 0.94914 1.20571 0.96662 0.93909 1.03718 1.24905 1.02760 1.05341 0.84648 1.86613 1.94679 1.36157 1.16010 0.94675 0.76329 0.78156 0.92335 1.18311 0.91081 0.83193 0.95804 1.84699 1.90696 1.17761 1.36724 1.20215 0.96278 0.93399 1.01936 1.20698 0.92294 1.00714 1.02974 1.21090 0.96319 0.93954 0.97051 1.23617 0.95266 1.01218 0.98106 1.20994 0.99908 0.91925 1.01248 1.21155 0.94326 0.98080 0.99519 1.21075 0.94362 0.97605 1.01253 0.91044 0.91503 0.91436 0.86252 0.88178 0.90437 0.76397 0.83715 0.85812 0.77750 1.17944 1.17735 0.74379 0.90467 0.90995 0.91236 0.85078 0.90712 0.88510 0.85980 0.85972 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.12 10.01 36.01 0.36 0.48 16 2 C -0.08 -0.06 5.88 -104.62 -0.62 -0.67 16 3 C -0.12 -0.05 9.37 -39.58 -0.37 -0.42 16 4 C -0.07 0.00 5.29 -104.62 -0.55 -0.56 16 5 C -0.07 0.12 3.87 -90.81 -0.35 -0.23 16 6 H 0.10 -0.25 8.09 -51.93 -0.42 -0.67 16 7 C -0.13 0.29 7.29 -25.92 -0.19 0.10 16 8 C 0.12 -0.10 4.30 -67.12 -0.29 -0.38 16 9 H 0.11 0.08 7.50 -51.93 -0.39 -0.31 16 10 N -0.71 0.67 5.21 -54.04 -0.28 0.39 16 11 C 0.56 1.09 7.76 -12.44 -0.10 1.00 16 12 O -0.53 -2.99 15.96 5.29 0.08 -2.91 16 13 C -0.14 -0.10 5.87 -104.96 -0.62 -0.72 16 14 C -0.05 -0.06 8.20 -39.22 -0.32 -0.38 16 15 C -0.15 -0.07 5.27 -104.54 -0.55 -0.62 16 16 C -0.07 -0.02 2.37 36.01 0.09 0.07 16 17 O -0.53 -0.41 12.88 -35.23 -0.45 -0.87 16 18 Si 0.68 0.18 30.24 -169.99 -5.14 -4.96 16 19 C 0.16 0.04 6.66 -39.02 -0.26 -0.22 16 20 O -0.49 0.07 11.85 -18.84 -0.22 -0.15 16 21 C -0.12 0.09 5.89 -104.53 -0.62 -0.52 16 22 C -0.11 0.27 9.78 36.01 0.35 0.62 16 23 C -0.07 0.08 9.18 -39.22 -0.36 -0.28 16 24 C -0.14 0.14 7.27 -25.77 -0.19 -0.05 16 25 C -0.12 -0.03 8.61 -39.58 -0.34 -0.37 16 26 C -0.11 -0.06 10.05 -39.58 -0.40 -0.46 16 27 C -0.12 -0.09 9.70 -39.58 -0.38 -0.48 16 28 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 29 H 0.07 -0.11 8.09 -51.92 -0.42 -0.53 16 30 H 0.07 -0.10 8.09 -51.93 -0.42 -0.52 16 31 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 32 H 0.10 -0.21 7.72 -51.93 -0.40 -0.61 16 33 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 34 H 0.40 -1.40 6.73 -40.82 -0.27 -1.67 16 35 H 0.15 0.25 4.43 -52.48 -0.23 0.01 16 36 H 0.12 0.04 7.82 -51.93 -0.41 -0.37 16 37 H 0.38 -0.71 8.70 45.56 0.40 -0.32 16 38 H -0.25 -0.63 6.68 56.52 0.38 -0.25 16 39 H -0.25 -0.78 7.11 56.52 0.40 -0.38 16 40 H 0.40 -1.36 9.06 45.56 0.41 -0.94 16 41 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 42 H 0.07 -0.18 7.53 -51.93 -0.39 -0.57 16 43 H 0.07 -0.25 8.08 -51.93 -0.42 -0.67 16 44 H 0.13 -0.54 6.40 -52.49 -0.34 -0.87 16 45 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 46 H 0.10 -0.11 6.32 -51.93 -0.33 -0.44 16 47 H 0.12 -0.14 6.66 -52.49 -0.35 -0.49 16 48 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 49 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 LS Contribution 400.50 15.07 6.04 6.04 Total: 0.00 -8.10 400.50 -11.84 -19.94 By element: Atomic # 1 Polarization: -7.23 SS G_CDS: -6.16 Total: -13.39 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -5.70 Total: -4.08 kcal Atomic # 7 Polarization: 0.67 SS G_CDS: -0.28 Total: 0.39 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: -0.59 Total: -3.93 kcal Atomic # 14 Polarization: 0.18 SS G_CDS: -5.14 Total: -4.96 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -8.10 -11.84 -19.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650858_13287732.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.171 kcal (2) G-P(sol) polarization free energy of solvation -8.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds