Wall clock time and date at job start Tue Mar 9 2021 12:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38214 * 119.99856 * 2 1 4 4 C 1.38261 * 120.00150 * 179.97438 * 3 2 1 5 5 C 1.50690 * 120.00104 * 180.02562 * 4 3 2 6 6 H 1.09004 * 112.85129 * 348.80187 * 5 4 3 7 7 C 1.53777 * 113.61484 * 119.99855 * 5 4 3 8 8 C 1.53784 * 87.08269 * 139.98200 * 7 5 4 9 9 H 1.09001 * 113.61507 * 219.93667 * 8 7 5 10 10 N 1.46498 * 113.61507 * 89.11382 * 8 7 5 11 11 C 1.34777 * 119.99828 * 156.25317 * 10 8 7 12 12 O 1.21553 * 119.99924 * 0.28083 * 11 10 8 13 13 C 1.47842 * 120.00010 * 180.27787 * 11 10 8 14 14 C 1.39518 * 120.55920 * 359.72068 * 13 11 10 15 15 N 1.31692 * 120.56640 * 179.72860 * 14 13 11 16 16 C 1.31931 * 121.88047 * 0.58579 * 15 14 13 17 17 C 1.38352 * 121.07506 * 359.68270 * 16 15 14 18 18 C 1.50700 * 120.34469 * 180.02562 * 17 16 15 19 19 O 1.42904 * 109.46865 * 245.01670 * 18 17 16 20 20 Si 1.86300 * 109.47331 * 5.01731 * 18 17 16 21 21 C 1.38355 * 119.30615 * 0.02562 * 17 16 15 22 22 C 1.53781 * 87.17096 * 334.52755 * 8 7 5 23 23 C 1.38217 * 119.99522 * 0.27350 * 4 3 2 24 24 C 1.38253 * 120.00287 * 359.54118 * 23 4 3 25 25 C 1.38217 * 119.99797 * 0.41489 * 24 23 4 26 26 H 1.08993 * 109.47521 * 89.99945 * 1 2 3 27 27 H 1.09000 * 109.47124 * 209.99888 * 1 2 3 28 28 H 1.09007 * 109.47166 * 329.99284 * 1 2 3 29 29 H 1.07999 * 119.99911 * 0.02562 * 3 2 1 30 30 H 1.08996 * 113.61421 * 25.43197 * 7 5 4 31 31 H 1.09008 * 113.61672 * 254.52665 * 7 5 4 32 32 H 0.97001 * 120.00384 * 336.53764 * 10 8 7 33 33 H 1.08003 * 119.71266 * 0.02768 * 14 13 11 34 34 H 1.08000 * 119.45935 * 179.69796 * 16 15 14 35 35 H 1.09000 * 109.47553 * 125.02291 * 18 17 16 36 36 H 0.96703 * 113.99745 * 60.00301 * 19 18 17 37 37 H 1.48502 * 109.99807 * 58.68089 * 20 18 17 38 38 H 1.48504 * 110.00065 * 180.02562 * 20 18 17 39 39 H 1.07998 * 120.85653 * 180.02562 * 21 17 16 40 40 H 1.08993 * 113.61427 * 140.02567 * 22 8 7 41 41 H 1.09003 * 113.61197 * 270.92752 * 22 8 7 42 42 H 1.07996 * 119.99359 * 179.72158 * 23 4 3 43 43 H 1.08001 * 120.00391 * 180.20915 * 24 23 4 44 44 H 1.08003 * 119.99640 * 179.79011 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1970 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.3340 2.5021 0.0011 6 1 3.6924 3.3614 -0.1940 7 6 5.2516 2.6831 1.2218 8 6 6.2808 3.2976 0.2584 9 1 7.3077 2.9969 0.4665 10 7 6.1351 4.7455 0.0894 11 6 7.1889 5.4873 -0.3052 12 8 8.2588 4.9543 -0.5259 13 6 7.0435 6.9493 -0.4697 14 6 5.8194 7.5724 -0.2253 15 7 5.6911 8.8754 -0.3667 16 6 6.6974 9.6370 -0.7514 17 6 7.9419 9.0948 -1.0185 18 6 9.0800 9.9801 -1.4565 19 8 9.4596 9.6422 -2.7921 20 14 8.5394 11.7619 -1.3964 21 6 8.1305 7.7312 -0.8794 22 6 5.6128 2.4770 -0.8575 23 6 4.2717 0.0001 -0.0046 24 6 3.5805 -1.1973 -0.0008 25 6 2.1983 -1.1973 -0.0004 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5140 29 1 1.6580 2.1323 0.0004 30 1 5.5771 1.7428 1.6666 31 1 4.8660 3.3893 1.9571 32 1 5.2813 5.1709 0.2656 33 1 4.9710 6.9817 0.0872 34 1 6.5472 10.7010 -0.8594 35 1 9.9301 9.8357 -0.7897 36 1 8.7503 9.7473 -3.4410 37 1 8.1119 12.1168 -0.0192 38 1 9.6528 12.6454 -1.8267 39 1 9.0915 7.2816 -1.0809 40 1 5.5185 3.0168 -1.7997 41 1 6.0368 1.4803 -0.9801 42 1 5.3516 0.0002 -0.0088 43 1 4.1204 -2.1326 -0.0014 44 1 1.6583 -2.1327 -0.0008 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9650858_13287814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:51:23 Heat of formation + Delta-G solvation = 20.757320 kcal Electronic energy + Delta-G solvation = -25932.958980 eV Core-core repulsion = 22203.336181 eV Total energy + Delta-G solvation = -3729.622799 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.06436 -41.33430 -40.16086 -38.85505 -37.99641 -34.97389 -33.80032 -33.56768 -32.90451 -31.73730 -27.87684 -27.36712 -26.80119 -26.78126 -25.31059 -23.90964 -23.08745 -22.21817 -21.73579 -19.96575 -19.31763 -18.21924 -18.01120 -17.73470 -17.60404 -16.92949 -16.52036 -16.36783 -16.23179 -15.89440 -15.81851 -15.31433 -14.99033 -14.80278 -14.63884 -14.46596 -14.38134 -14.23177 -14.04069 -13.82823 -13.59579 -13.55066 -13.12779 -12.82544 -12.78046 -12.73940 -12.22855 -12.17553 -11.78225 -11.73514 -11.36749 -11.25109 -11.07914 -10.65377 -10.60186 -10.39979 -10.16902 -9.68548 -9.45900 -5.17909 -0.62099 -0.06272 0.41470 0.48396 1.10072 1.50035 1.67347 1.82489 1.90072 2.58829 2.77647 2.96988 3.27242 3.34441 3.34668 3.55526 3.57544 3.58698 3.67736 3.70349 3.83311 3.94495 4.00814 4.05457 4.07875 4.14405 4.21131 4.38742 4.42892 4.48456 4.55868 4.64143 4.68557 4.69154 4.71094 4.79982 4.84488 4.87534 4.91888 4.93831 5.02941 5.14783 5.23753 5.25219 5.43487 5.57633 5.68581 5.71992 6.10763 6.28026 6.40865 6.57888 7.02569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.084 4.084 3 C -0.117 4.117 4 C -0.068 4.068 5 C -0.073 4.073 6 H 0.097 0.903 7 C -0.135 4.135 8 C 0.119 3.881 9 H 0.107 0.893 10 N -0.707 5.707 11 C 0.568 3.432 12 O -0.525 6.525 13 C -0.188 4.188 14 C 0.140 3.860 15 N -0.477 5.477 16 C 0.130 3.870 17 C -0.179 4.179 18 C -0.064 4.064 19 O -0.536 6.536 20 Si 0.687 3.313 21 C 0.012 3.988 22 C -0.143 4.143 23 C -0.123 4.123 24 C -0.113 4.113 25 C -0.125 4.125 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.401 0.599 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.120 0.880 36 H 0.380 0.620 37 H -0.253 1.253 38 H -0.248 1.248 39 H 0.152 0.848 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 0.717 -0.249 4.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.084 4.084 3 C -0.135 4.135 4 C -0.068 4.068 5 C -0.092 4.092 6 H 0.115 0.885 7 C -0.173 4.173 8 C 0.014 3.986 9 H 0.125 0.875 10 N -0.359 5.359 11 C 0.354 3.646 12 O -0.402 6.402 13 C -0.193 4.193 14 C -0.019 4.019 15 N -0.185 5.185 16 C -0.026 4.026 17 C -0.181 4.181 18 C -0.176 4.176 19 O -0.341 6.341 20 Si 0.587 3.413 21 C -0.014 4.014 22 C -0.181 4.181 23 C -0.141 4.141 24 C -0.131 4.131 25 C -0.143 4.143 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.236 0.764 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.137 0.863 36 H 0.228 0.772 37 H -0.177 1.177 38 H -0.172 1.172 39 H 0.170 0.830 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.995 1.390 0.414 4.250 hybrid contribution 0.535 -0.817 0.231 1.003 sum -3.460 0.573 0.645 3.566 Atomic orbital electron populations 1.20819 0.91114 1.02925 1.02495 1.19950 0.96165 0.93163 0.99093 1.20932 0.93496 0.97590 1.01492 1.19637 0.93390 0.94311 0.99494 1.21640 0.95024 0.95327 0.97173 0.88500 1.23424 0.95566 1.02000 0.96261 1.21902 1.00879 0.79091 0.96751 0.87489 1.45561 1.13409 1.07649 1.69289 1.17997 0.83968 0.85868 0.76744 1.90826 1.26712 1.73060 1.49553 1.21020 0.96456 0.94593 1.07263 1.23026 0.95370 0.90961 0.92529 1.67720 1.32406 1.05760 1.12590 1.22881 0.87782 0.99893 0.92077 1.21439 0.97340 0.95676 1.03691 1.25035 0.97852 1.08035 0.86655 1.86554 1.41042 1.90906 1.15574 0.94875 0.86399 0.74469 0.85518 1.21641 0.98981 0.92085 0.88701 1.23614 0.95234 1.01234 0.98066 1.20990 0.99894 0.91935 1.01273 1.21153 0.94329 0.98073 0.99537 1.21078 0.94358 0.97612 1.01231 0.91044 0.91437 0.91473 0.86201 0.88144 0.90398 0.76351 0.82196 0.81988 0.86280 0.77202 1.17725 1.17250 0.83002 0.90609 0.88459 0.86000 0.85981 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.12 10.01 36.00 0.36 0.48 16 2 C -0.08 -0.06 5.88 -104.63 -0.62 -0.67 16 3 C -0.12 -0.05 9.37 -39.58 -0.37 -0.42 16 4 C -0.07 0.00 5.29 -104.63 -0.55 -0.55 16 5 C -0.07 0.13 3.87 -90.82 -0.35 -0.22 16 6 H 0.10 -0.27 8.09 -51.93 -0.42 -0.69 16 7 C -0.13 0.30 7.29 -25.92 -0.19 0.11 16 8 C 0.12 -0.12 4.30 -67.12 -0.29 -0.40 16 9 H 0.11 0.07 7.50 -51.93 -0.39 -0.32 16 10 N -0.71 0.89 5.22 -53.96 -0.28 0.61 16 11 C 0.57 0.93 7.78 -12.33 -0.10 0.83 16 12 O -0.53 -2.90 16.04 5.32 0.09 -2.81 16 13 C -0.19 -0.09 5.89 -104.82 -0.62 -0.71 16 14 C 0.14 -0.12 10.71 -17.13 -0.18 -0.30 16 15 N -0.48 -0.18 10.35 -12.91 -0.13 -0.32 16 16 C 0.13 -0.11 9.84 -17.47 -0.17 -0.28 16 17 C -0.18 0.10 5.35 -104.54 -0.56 -0.46 16 18 C -0.06 0.08 2.82 36.01 0.10 0.18 16 19 O -0.54 0.27 12.84 -35.23 -0.45 -0.18 16 20 Si 0.69 -1.56 29.83 -169.99 -5.07 -6.63 16 21 C 0.01 0.01 9.38 -38.87 -0.36 -0.35 16 22 C -0.14 0.16 7.27 -25.78 -0.19 -0.02 16 23 C -0.12 -0.02 8.63 -39.58 -0.34 -0.37 16 24 C -0.11 -0.06 10.05 -39.58 -0.40 -0.46 16 25 C -0.12 -0.09 9.70 -39.58 -0.38 -0.48 16 26 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 27 H 0.07 -0.10 8.09 -51.93 -0.42 -0.52 16 28 H 0.07 -0.11 8.09 -51.92 -0.42 -0.53 16 29 H 0.12 -0.13 8.05 -52.49 -0.42 -0.55 16 30 H 0.10 -0.21 7.73 -51.93 -0.40 -0.61 16 31 H 0.08 -0.22 8.14 -51.92 -0.42 -0.64 16 32 H 0.40 -1.57 6.77 -40.82 -0.28 -1.84 16 33 H 0.16 -0.65 6.42 -52.48 -0.34 -0.98 16 34 H 0.16 -0.52 4.91 -52.49 -0.26 -0.78 16 35 H 0.12 -0.10 7.96 -51.93 -0.41 -0.51 16 36 H 0.38 -1.70 8.70 45.56 0.40 -1.31 16 37 H -0.25 0.00 7.11 56.52 0.40 0.41 16 38 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 39 H 0.15 0.25 7.74 -52.49 -0.41 -0.16 16 40 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 41 H 0.10 -0.12 6.30 -51.93 -0.33 -0.45 16 42 H 0.12 -0.15 6.64 -52.49 -0.35 -0.49 16 43 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 44 H 0.12 -0.07 8.06 -52.48 -0.42 -0.50 16 LS Contribution 365.44 15.07 5.51 5.51 Total: 0.00 -8.47 365.44 -11.31 -19.78 By element: Atomic # 1 Polarization: -6.10 SS G_CDS: -5.75 Total: -11.86 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -5.21 Total: -4.10 kcal Atomic # 7 Polarization: 0.71 SS G_CDS: -0.42 Total: 0.29 kcal Atomic # 8 Polarization: -2.62 SS G_CDS: -0.37 Total: -2.99 kcal Atomic # 14 Polarization: -1.56 SS G_CDS: -5.07 Total: -6.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -8.47 -11.31 -19.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650858_13287814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.535 kcal (2) G-P(sol) polarization free energy of solvation -8.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds