Wall clock time and date at job start Tue Mar 9 2021 12:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38213 * 119.99892 * 2 1 4 4 C 1.38259 * 119.99978 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.00202 * 180.02562 * 4 3 2 6 6 H 1.09008 * 112.84873 * 11.19753 * 5 4 3 7 7 C 1.53781 * 113.61505 * 142.49688 * 5 4 3 8 8 C 1.53785 * 87.07707 * 139.98431 * 7 5 4 9 9 H 1.09002 * 113.68697 * 220.01106 * 8 7 5 10 10 N 1.46495 * 113.61552 * 89.12009 * 8 7 5 11 11 C 1.34777 * 119.99950 * 107.50113 * 10 8 7 12 12 O 1.21589 * 120.00215 * 359.97438 * 11 10 8 13 13 C 1.47525 * 119.99797 * 180.02562 * 11 10 8 14 14 C 1.39777 * 120.06809 * 180.02562 * 13 11 10 15 15 C 1.37630 * 119.93257 * 180.02562 * 14 13 11 16 16 C 1.50697 * 119.96645 * 179.97438 * 15 14 13 17 17 O 1.42890 * 109.47428 * 255.02440 * 16 15 14 18 18 Si 1.86297 * 109.46897 * 15.02760 * 16 15 14 19 19 C 1.39204 * 120.06660 * 0.02562 * 15 14 13 20 20 N 1.39045 * 119.92850 * 179.97438 * 19 15 14 21 21 C 1.46901 * 110.99709 * 120.00359 * 20 19 15 22 22 C 1.46895 * 110.99904 * 243.94988 * 20 19 15 23 23 C 1.39242 * 120.13752 * 0.23293 * 19 15 14 24 24 C 1.37593 * 120.06728 * 359.48530 * 23 19 15 25 25 C 1.53779 * 113.61545 * 240.00062 * 5 4 3 26 26 C 1.38215 * 119.99551 * 0.26976 * 4 3 2 27 27 C 1.38260 * 120.00308 * 359.52205 * 26 4 3 28 28 C 1.38208 * 119.99713 * 0.43699 * 27 26 4 29 29 H 1.09001 * 109.47505 * 89.99982 * 1 2 3 30 30 H 1.08998 * 109.47213 * 209.99886 * 1 2 3 31 31 H 1.09004 * 109.47409 * 329.99971 * 1 2 3 32 32 H 1.08006 * 120.00084 * 359.97438 * 3 2 1 33 33 H 1.09000 * 113.61112 * 25.43964 * 7 5 4 34 34 H 1.08999 * 113.61344 * 254.52906 * 7 5 4 35 35 H 0.96997 * 120.00132 * 287.50259 * 10 8 7 36 36 H 1.07996 * 120.03311 * 0.03971 * 14 13 11 37 37 H 1.09004 * 109.46596 * 135.02742 * 16 15 14 38 38 H 0.96708 * 114.00088 * 299.99923 * 17 16 15 39 39 H 1.48498 * 110.00351 * 60.00018 * 18 16 15 40 40 H 1.48505 * 110.00009 * 181.31490 * 18 16 15 41 41 H 1.08998 * 109.47478 * 59.99400 * 21 20 19 42 42 H 1.08994 * 109.47090 * 180.02562 * 21 20 19 43 43 H 1.09007 * 109.46737 * 299.99779 * 21 20 19 44 44 H 1.09001 * 109.46888 * 60.00844 * 22 20 19 45 45 H 1.09004 * 109.46957 * 180.02562 * 22 20 19 46 46 H 1.08994 * 109.48029 * 300.00372 * 22 20 19 47 47 H 1.07991 * 119.96370 * 179.72559 * 23 19 15 48 48 H 1.08004 * 120.03162 * 180.25819 * 24 23 19 49 49 H 1.08997 * 113.61682 * 105.47161 * 25 5 4 50 50 H 1.08994 * 113.68847 * 334.57519 * 25 5 4 51 51 H 1.08003 * 119.99442 * 179.72656 * 26 4 3 52 52 H 1.08001 * 119.99807 * 180.27075 * 27 26 4 53 53 H 1.08006 * 119.99991 * 179.83610 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1970 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.3341 2.5020 0.0011 6 1 3.6923 3.3613 0.1961 7 6 5.6099 2.4764 0.8594 8 6 6.2811 3.2976 -0.2542 9 1 7.3081 2.9970 -0.4616 10 7 6.1353 4.7454 -0.0848 11 6 7.1952 5.4905 0.2865 12 8 8.2723 4.9610 0.4814 13 6 7.0483 6.9484 0.4576 14 6 8.1466 7.7227 0.8422 15 6 8.0063 9.0825 1.0015 16 6 9.1898 9.9179 1.4167 17 8 9.0528 10.2889 2.7897 18 14 10.7547 8.9321 1.1929 19 6 6.7719 9.6868 0.7806 20 7 6.6332 11.0608 0.9429 21 6 6.2027 11.6979 -0.3088 22 6 5.7040 11.3704 2.0377 23 6 5.6745 8.9176 0.4026 24 6 5.8099 7.5585 0.2361 25 6 5.2527 2.6836 -1.2187 26 6 4.2716 0.0000 -0.0046 27 6 3.5803 -1.1974 -0.0002 28 6 2.1983 -1.1973 0.0001 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6580 2.1323 -0.0004 33 1 6.0333 1.4796 0.9825 34 1 5.5131 3.0157 1.8017 35 1 5.2760 5.1678 -0.2399 36 1 9.1045 7.2543 1.0139 37 1 9.2347 10.8159 0.8004 38 1 8.2580 10.8058 2.9801 39 1 10.9089 8.5401 -0.2311 40 1 11.9265 9.7335 1.6287 41 1 5.2425 11.2835 -0.6160 42 1 6.1025 12.7721 -0.1540 43 1 6.9444 11.5108 -1.0855 44 1 6.0831 10.9453 2.9671 45 1 5.6136 12.4516 2.1427 46 1 4.7257 10.9442 1.8156 47 1 4.7171 9.3887 0.2363 48 1 4.9593 6.9629 -0.0611 49 1 4.8677 3.3900 -1.9540 50 1 5.5791 1.7441 -1.6648 51 1 5.3516 0.0000 -0.0086 52 1 4.1204 -2.1327 0.0002 53 1 1.6582 -2.1327 0.0008 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650858_13422196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:51:39 Heat of formation + Delta-G solvation = 27.563727 kcal Electronic energy + Delta-G solvation = -32379.363719 eV Core-core repulsion = 28183.423212 eV Total energy + Delta-G solvation = -4195.940508 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90924 -41.25740 -40.27160 -38.91644 -37.69686 -37.30216 -34.90027 -33.41428 -32.74857 -31.91190 -31.12354 -28.59392 -27.79532 -26.93420 -26.77978 -26.66548 -25.54898 -23.46354 -23.04104 -22.96938 -22.00564 -21.26377 -19.87487 -19.16257 -18.04561 -17.93487 -17.55227 -17.36434 -16.75855 -16.43338 -16.30808 -16.18377 -15.93194 -15.85338 -15.49176 -15.25894 -15.17195 -14.89841 -14.74149 -14.63281 -14.32691 -14.19192 -13.99188 -13.95390 -13.78036 -13.52238 -13.43345 -13.10405 -13.03311 -13.00869 -12.77106 -12.73071 -12.65699 -12.63070 -12.21175 -12.13246 -11.69352 -11.63312 -11.41248 -11.29434 -11.15504 -11.04465 -10.21525 -10.10157 -9.79942 -9.66162 -9.63007 -9.42699 -4.93103 -0.41876 0.14133 0.43674 0.50090 1.32085 1.53103 1.65039 1.85341 1.98489 2.61116 2.72176 2.80588 3.45706 3.50893 3.58312 3.69112 3.69918 3.74512 3.89427 3.94905 4.01669 4.02451 4.08647 4.10996 4.18079 4.21263 4.27962 4.34457 4.39484 4.43724 4.50626 4.56489 4.57388 4.63902 4.65422 4.71997 4.78235 4.79338 4.80901 4.85529 4.93225 4.93460 4.97279 5.01503 5.02439 5.04206 5.11619 5.16086 5.19883 5.21094 5.31674 5.49159 5.55158 5.60275 5.72301 5.75682 5.76310 6.15329 6.19070 6.43174 6.62906 7.10915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.098 4.098 3 C -0.129 4.129 4 C -0.073 4.073 5 C -0.065 4.065 6 H 0.111 0.889 7 C -0.142 4.142 8 C 0.115 3.885 9 H 0.088 0.912 10 N -0.693 5.693 11 C 0.560 3.440 12 O -0.572 6.572 13 C -0.146 4.146 14 C -0.059 4.059 15 C -0.113 4.113 16 C -0.057 4.057 17 O -0.544 6.544 18 Si 0.772 3.228 19 C 0.126 3.874 20 N -0.528 5.528 21 C 0.025 3.975 22 C 0.023 3.977 23 C -0.152 4.152 24 C -0.058 4.058 25 C -0.124 4.124 26 C -0.134 4.134 27 C -0.126 4.126 28 C -0.141 4.141 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.415 0.585 36 H 0.137 0.863 37 H 0.080 0.920 38 H 0.373 0.627 39 H -0.274 1.274 40 H -0.286 1.286 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.043 0.957 47 H 0.152 0.848 48 H 0.161 0.839 49 H 0.088 0.912 50 H 0.099 0.901 51 H 0.131 0.869 52 H 0.132 0.868 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.696 1.333 -1.582 8.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.073 4.073 5 C -0.083 4.083 6 H 0.129 0.871 7 C -0.180 4.180 8 C 0.010 3.990 9 H 0.107 0.893 10 N -0.345 5.345 11 C 0.349 3.651 12 O -0.452 6.452 13 C -0.149 4.149 14 C -0.078 4.078 15 C -0.114 4.114 16 C -0.167 4.167 17 O -0.351 6.351 18 Si 0.675 3.325 19 C 0.031 3.969 20 N -0.250 5.250 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.172 4.172 24 C -0.077 4.077 25 C -0.162 4.162 26 C -0.151 4.151 27 C -0.143 4.143 28 C -0.159 4.159 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.253 0.747 36 H 0.154 0.846 37 H 0.098 0.902 38 H 0.223 0.777 39 H -0.200 1.200 40 H -0.213 1.213 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.107 0.893 46 H 0.062 0.938 47 H 0.170 0.830 48 H 0.178 0.822 49 H 0.107 0.893 50 H 0.117 0.883 51 H 0.149 0.851 52 H 0.150 0.850 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.183 0.806 -1.670 6.455 hybrid contribution -1.854 0.954 -0.671 2.191 sum -8.037 1.760 -2.342 8.554 Atomic orbital electron populations 1.20835 0.90149 1.03381 1.02847 1.20228 0.97107 0.93342 0.99094 1.21175 0.93818 0.98111 1.01556 1.19849 0.93539 0.94918 0.99013 1.21587 0.94676 0.95018 0.97012 0.87087 1.23547 0.95683 1.01044 0.97762 1.21875 1.00286 0.79391 0.97449 0.89336 1.45438 1.12802 1.07340 1.68932 1.18368 0.83831 0.86897 0.76015 1.90796 1.28126 1.74242 1.52028 1.19860 0.95637 0.92449 1.06942 1.21076 0.98674 0.92531 0.95512 1.20185 0.95858 0.93457 1.01907 1.25134 1.04617 1.01301 0.85660 1.86699 1.48807 1.75975 1.23630 0.92263 0.72731 0.86157 0.81357 1.18971 0.92379 0.89664 0.95852 1.59452 1.51046 1.06298 1.08182 1.22523 0.99591 1.00333 0.89657 1.22593 0.93662 1.03132 0.92915 1.21821 0.99655 0.94374 1.01303 1.21452 0.95959 0.95014 0.95314 1.23363 0.94701 1.02019 0.96132 1.21201 1.00541 0.92096 1.01302 1.21389 0.94565 0.98788 0.99606 1.21296 0.94705 0.98198 1.01710 0.90660 0.91190 0.90841 0.84856 0.88607 0.91318 0.74696 0.84584 0.90221 0.77721 1.20001 1.21328 0.93601 0.89460 0.91915 0.90839 0.89347 0.93813 0.83044 0.82158 0.89328 0.88277 0.85102 0.85006 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.29 10.01 71.24 0.71 1.00 16 2 C -0.10 -0.12 5.88 -19.87 -0.12 -0.24 16 3 C -0.13 -0.02 9.37 22.27 0.21 0.19 16 4 C -0.07 0.03 5.29 -19.87 -0.11 -0.08 16 5 C -0.06 0.28 3.86 -11.02 -0.04 0.24 16 6 H 0.11 -0.82 8.09 -2.38 -0.02 -0.84 16 7 C -0.14 0.29 7.25 31.12 0.23 0.51 16 8 C 0.12 -0.16 4.32 45.52 0.20 0.03 16 9 H 0.09 0.27 7.46 -2.39 -0.02 0.25 16 10 N -0.69 1.58 5.21 -443.21 -2.31 -0.73 16 11 C 0.56 2.60 7.76 86.69 0.67 3.28 16 12 O -0.57 -7.48 15.94 -3.99 -0.06 -7.54 16 13 C -0.15 -0.28 5.88 -20.08 -0.12 -0.40 16 14 C -0.06 -0.27 8.19 22.50 0.18 -0.09 16 15 C -0.11 -0.35 5.28 -19.78 -0.10 -0.46 16 16 C -0.06 -0.25 2.29 71.24 0.16 -0.09 16 17 O -0.54 -2.79 12.65 -148.98 -1.89 -4.68 16 18 Si 0.77 4.45 30.17 68.60 2.07 6.52 16 19 C 0.13 -0.07 4.66 38.47 0.18 0.11 16 20 N -0.53 1.49 3.70 -745.11 -2.76 -1.27 16 21 C 0.03 -0.12 9.34 127.69 1.19 1.07 16 22 C 0.02 -0.14 9.09 127.69 1.16 1.02 16 23 C -0.15 0.64 8.53 22.36 0.19 0.83 16 24 C -0.06 0.26 9.53 22.50 0.21 0.48 16 25 C -0.12 0.61 7.29 31.12 0.23 0.84 16 26 C -0.13 -0.08 8.60 22.27 0.19 0.11 16 27 C -0.13 -0.18 10.05 22.27 0.22 0.05 16 28 C -0.14 -0.25 9.70 22.27 0.22 -0.04 16 29 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.07 -0.22 8.09 -2.39 -0.02 -0.24 16 31 H 0.07 -0.29 8.09 -2.38 -0.02 -0.31 16 32 H 0.13 -0.47 8.06 -2.91 -0.02 -0.49 16 33 H 0.10 -0.17 6.32 -2.39 -0.02 -0.19 16 34 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.41 -3.63 6.72 -92.71 -0.62 -4.26 16 36 H 0.14 0.78 4.70 -2.91 -0.01 0.77 16 37 H 0.08 0.34 7.78 -2.38 -0.02 0.32 16 38 H 0.37 0.21 7.47 -74.05 -0.55 -0.35 16 39 H -0.27 -2.55 7.11 99.48 0.71 -1.84 16 40 H -0.29 -3.19 7.11 99.48 0.71 -2.49 16 41 H 0.05 -0.32 7.11 -2.39 -0.02 -0.33 16 42 H 0.09 -0.58 8.12 -2.39 -0.02 -0.60 16 43 H 0.06 -0.18 8.14 -2.38 -0.02 -0.20 16 44 H 0.07 -0.43 7.41 -2.39 -0.02 -0.45 16 45 H 0.09 -0.69 8.12 -2.39 -0.02 -0.71 16 46 H 0.04 -0.33 7.30 -2.39 -0.02 -0.35 16 47 H 0.15 -1.30 6.99 -2.92 -0.02 -1.32 16 48 H 0.16 -1.87 6.39 -2.91 -0.02 -1.89 16 49 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 50 H 0.10 -0.43 7.72 -2.39 -0.02 -0.45 16 51 H 0.13 -0.26 6.67 -2.91 -0.02 -0.28 16 52 H 0.13 -0.21 8.06 -2.91 -0.02 -0.24 16 53 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 Total: 0.00 -17.41 421.33 0.52 -16.89 By element: Atomic # 1 Polarization: -17.35 SS G_CDS: -0.20 Total: -17.55 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 5.67 Total: 8.37 kcal Atomic # 7 Polarization: 3.06 SS G_CDS: -5.07 Total: -2.01 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -1.95 Total: -12.22 kcal Atomic # 14 Polarization: 4.45 SS G_CDS: 2.07 Total: 6.52 kcal Total: -17.41 0.52 -16.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650858_13422196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.450 kcal (2) G-P(sol) polarization free energy of solvation -17.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds