Wall clock time and date at job start Tue Mar 9 2021 12:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38216 * 120.00020 * 2 1 4 4 C 1.38256 * 120.00092 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99807 * 180.02562 * 4 3 2 6 6 H 1.08996 * 112.85321 * 348.79585 * 5 4 3 7 7 C 1.53781 * 113.61360 * 119.99818 * 5 4 3 8 8 C 1.53781 * 87.08090 * 139.97864 * 7 5 4 9 9 H 1.08999 * 113.61684 * 220.01799 * 8 7 5 10 10 N 1.46500 * 113.61661 * 89.20047 * 8 7 5 11 11 C 1.34778 * 120.00349 * 155.00242 * 10 8 7 12 12 O 1.21285 * 119.99538 * 359.97438 * 11 10 8 13 13 C 1.50700 * 120.00106 * 180.02562 * 11 10 8 14 14 C 1.50695 * 109.46899 * 179.97438 * 13 11 10 15 15 C 1.34853 * 125.89111 * 274.68806 * 14 13 11 16 16 C 1.40891 * 107.41856 * 179.88612 * 15 14 13 17 17 C 1.34850 * 107.41777 * 0.38127 * 16 15 14 18 18 C 1.50697 * 125.89082 * 179.73383 * 17 16 15 19 19 O 1.42900 * 109.47060 * 245.03626 * 18 17 16 20 20 Si 1.86301 * 109.47259 * 5.03972 * 18 17 16 21 21 N 1.36339 * 125.89425 * 95.00008 * 14 13 11 22 22 C 1.53778 * 87.08150 * 334.56601 * 8 7 5 23 23 C 1.38208 * 119.99920 * 359.73680 * 4 3 2 24 24 C 1.38260 * 120.00088 * 0.52185 * 23 4 3 25 25 C 1.38212 * 119.99650 * 359.47803 * 24 23 4 26 26 H 1.08998 * 109.46845 * 270.02146 * 1 2 3 27 27 H 1.08996 * 109.47280 * 30.02307 * 1 2 3 28 28 H 1.08999 * 109.46887 * 150.02201 * 1 2 3 29 29 H 1.08001 * 119.99666 * 359.97438 * 3 2 1 30 30 H 1.08999 * 113.61513 * 254.52454 * 7 5 4 31 31 H 1.08994 * 113.61471 * 25.43042 * 7 5 4 32 32 H 0.97006 * 119.99667 * 335.00099 * 10 8 7 33 33 H 1.08995 * 109.46564 * 299.99764 * 13 11 10 34 34 H 1.08998 * 109.47028 * 60.00002 * 13 11 10 35 35 H 1.07999 * 126.29236 * 0.02562 * 15 14 13 36 36 H 1.08003 * 126.29043 * 180.12629 * 16 15 14 37 37 H 1.09001 * 109.46761 * 125.04172 * 18 17 16 38 38 H 0.96708 * 113.99941 * 60.00337 * 19 18 17 39 39 H 1.48490 * 109.99715 * 58.68137 * 20 18 17 40 40 H 1.48495 * 109.99661 * 180.02562 * 20 18 17 41 41 H 0.97003 * 125.63241 * 359.95567 * 21 14 13 42 42 H 1.09003 * 113.61456 * 270.88095 * 22 8 7 43 43 H 1.09001 * 113.61533 * 139.98218 * 22 8 7 44 44 H 1.08004 * 120.00251 * 180.27790 * 23 4 3 45 45 H 1.08002 * 120.00476 * 179.76436 * 24 23 4 46 46 H 1.07999 * 119.99941 * 180.27784 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1970 0.0000 4 6 3.5807 1.1970 0.0005 5 6 4.3341 2.5021 0.0011 6 1 3.6925 3.3613 -0.1941 7 6 5.2517 2.6831 1.2218 8 6 6.2809 3.2975 0.2584 9 1 7.3075 2.9957 0.4656 10 7 6.1365 4.7457 0.0910 11 6 7.1971 5.4904 -0.2792 12 8 8.2712 4.9616 -0.4732 13 6 7.0487 6.9803 -0.4508 14 6 8.3713 7.5724 -0.8645 15 6 9.3639 7.9485 -0.0328 16 6 10.4156 8.4444 -0.8283 17 6 10.0224 8.3603 -2.1155 18 6 10.8294 8.7847 -3.3153 19 8 10.1793 9.8799 -3.9634 20 14 12.5304 9.3092 -2.7657 21 7 8.7684 7.8259 -2.1440 22 6 5.6106 2.4768 -0.8560 23 6 4.2717 0.0001 0.0066 24 6 3.5805 -1.1973 0.0012 25 6 2.1983 -1.1973 0.0006 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6580 2.1323 -0.0004 30 1 4.8660 3.3893 1.9571 31 1 5.5771 1.7428 1.6667 32 1 5.2775 5.1687 0.2465 33 1 6.3025 7.1849 -1.2185 34 1 6.7311 7.4248 0.4923 35 1 9.3552 7.8799 1.0450 36 1 11.3612 8.8260 -0.4724 37 1 10.9135 7.9493 -4.0104 38 1 10.0701 10.6602 -3.4026 39 1 13.2047 8.1888 -2.0622 40 1 13.3360 9.7306 -3.9398 41 1 8.2453 7.6540 -2.9426 42 1 6.0342 1.4800 -0.9793 43 1 5.5147 3.0164 -1.7982 44 1 5.3517 0.0001 0.0115 45 1 4.1204 -2.1326 0.0020 46 1 1.6583 -2.1326 0.0009 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650858_14644196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:51:54 Heat of formation + Delta-G solvation = 23.152084 kcal Electronic energy + Delta-G solvation = -26260.849697 eV Core-core repulsion = 22504.019265 eV Total energy + Delta-G solvation = -3756.830432 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.34343 -41.51298 -40.29362 -38.87555 -37.68488 -34.76040 -33.47621 -32.94062 -31.93489 -31.77367 -29.38550 -27.79434 -26.70067 -26.27199 -25.07683 -23.07650 -22.49058 -21.81498 -21.35502 -21.01082 -19.84253 -18.91623 -18.33814 -17.58635 -17.26882 -16.79280 -16.39960 -16.35807 -16.17659 -15.98390 -15.35675 -15.18910 -14.93516 -14.74867 -14.57830 -14.52527 -14.17133 -14.13385 -14.00154 -13.83419 -13.80838 -13.53168 -13.46444 -13.04401 -12.83623 -12.72842 -12.63816 -12.16251 -12.11660 -12.00317 -11.71817 -11.65049 -11.18552 -11.02151 -10.63975 -10.09921 -9.79535 -9.69168 -9.45867 -8.96410 -4.97131 0.40482 0.46922 1.10733 1.26115 1.58576 1.69346 1.85987 1.94587 2.27219 2.51201 2.77390 3.46306 3.51173 3.65903 3.67011 3.69283 3.79716 3.92006 3.99409 4.03258 4.05469 4.18323 4.21622 4.24575 4.37568 4.48181 4.49113 4.53885 4.61485 4.64819 4.73991 4.75907 4.79511 4.80188 4.84986 4.91220 4.97642 5.02205 5.15004 5.18245 5.25882 5.29291 5.29532 5.54698 5.56935 5.69615 5.73723 6.00396 6.12255 6.13849 6.51235 6.66374 6.70899 7.24883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.128 4.128 4 C -0.074 4.074 5 C -0.063 4.063 6 H 0.113 0.887 7 C -0.124 4.124 8 C 0.117 3.883 9 H 0.079 0.921 10 N -0.699 5.699 11 C 0.512 3.488 12 O -0.579 6.579 13 C -0.066 4.066 14 C 0.032 3.968 15 C -0.200 4.200 16 C -0.201 4.201 17 C -0.023 4.023 18 C -0.053 4.053 19 O -0.557 6.557 20 Si 0.810 3.190 21 N -0.538 5.538 22 C -0.144 4.144 23 C -0.135 4.135 24 C -0.126 4.126 25 C -0.141 4.141 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.135 0.865 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.419 0.581 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.099 0.901 38 H 0.397 0.603 39 H -0.296 1.296 40 H -0.292 1.292 41 H 0.418 0.582 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.128 0.872 45 H 0.131 0.869 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 3.274 2.938 7.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.074 4.074 5 C -0.081 4.081 6 H 0.131 0.869 7 C -0.162 4.162 8 C 0.011 3.989 9 H 0.097 0.903 10 N -0.352 5.352 11 C 0.300 3.700 12 O -0.457 6.457 13 C -0.106 4.106 14 C -0.082 4.082 15 C -0.224 4.224 16 C -0.226 4.226 17 C -0.136 4.136 18 C -0.162 4.162 19 O -0.365 6.365 20 Si 0.715 3.285 21 N -0.133 5.133 22 C -0.182 4.182 23 C -0.153 4.153 24 C -0.144 4.144 25 C -0.159 4.159 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.153 0.847 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.256 0.744 33 H 0.147 0.853 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.171 0.829 37 H 0.117 0.883 38 H 0.248 0.752 39 H -0.223 1.223 40 H -0.220 1.220 41 H 0.255 0.745 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.970 2.328 2.114 5.881 hybrid contribution -0.789 -0.956 -0.616 1.385 sum -5.759 1.372 1.498 6.107 Atomic orbital electron populations 1.20836 0.90040 1.03412 1.02905 1.20244 0.97175 0.93309 0.98982 1.21181 0.93746 0.98173 1.01475 1.19865 0.93610 0.94925 0.99016 1.21573 0.94546 0.95022 0.96937 0.86859 1.23342 0.94749 1.01901 0.96191 1.21763 0.99612 0.80396 0.97101 0.90292 1.45545 1.13283 1.06812 1.69555 1.21100 0.83403 0.90125 0.75393 1.90759 1.28748 1.74820 1.51400 1.20249 0.93813 0.89512 1.07002 1.19931 0.98200 1.06301 0.83774 1.20864 0.94382 1.07600 0.99572 1.20927 1.01127 1.08787 0.91724 1.20984 0.88077 1.07812 0.96736 1.24914 1.06447 0.91708 0.93170 1.86443 1.81831 1.25532 1.42741 0.93078 0.70296 0.85242 0.79906 1.41899 1.14428 1.49143 1.07865 1.23534 0.96011 1.00858 0.97811 1.21183 1.00406 0.92229 1.01493 1.21384 0.94625 0.98719 0.99657 1.21299 0.94633 0.98261 1.01676 0.90588 0.90795 0.91172 0.84733 0.89084 0.88759 0.74355 0.85303 0.83563 0.84021 0.82890 0.88331 0.75224 1.22308 1.21952 0.74485 0.89213 0.91523 0.85407 0.85065 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.27 10.01 71.24 0.71 0.98 16 2 C -0.10 -0.15 5.88 -19.87 -0.12 -0.27 16 3 C -0.13 -0.06 9.37 22.27 0.21 0.15 16 4 C -0.07 -0.02 5.29 -19.87 -0.11 -0.12 16 5 C -0.06 0.25 3.86 -11.01 -0.04 0.21 16 6 H 0.11 -0.82 8.09 -2.39 -0.02 -0.84 16 7 C -0.12 0.56 7.29 31.12 0.23 0.78 16 8 C 0.12 -0.14 4.32 45.52 0.20 0.06 16 9 H 0.08 0.36 7.46 -2.39 -0.02 0.34 16 10 N -0.70 2.91 5.27 -440.04 -2.32 0.59 16 11 C 0.51 0.79 7.82 87.66 0.69 1.48 16 12 O -0.58 -7.52 15.63 -3.04 -0.05 -7.56 16 13 C -0.07 0.32 6.24 29.10 0.18 0.51 16 14 C 0.03 0.08 5.66 41.08 0.23 0.32 16 15 C -0.20 -1.00 10.76 22.14 0.24 -0.76 16 16 C -0.20 -0.92 9.37 22.14 0.21 -0.72 16 17 C -0.02 -0.09 6.50 41.08 0.27 0.17 16 18 C -0.05 -0.11 3.08 71.23 0.22 0.11 16 19 O -0.56 -0.61 12.88 -148.98 -1.92 -2.53 16 20 Si 0.81 0.15 30.60 68.60 2.10 2.25 16 21 N -0.54 -1.59 6.07 -171.12 -1.04 -2.63 16 22 C -0.14 0.20 7.26 31.12 0.23 0.42 16 23 C -0.14 -0.19 8.60 22.27 0.19 0.00 16 24 C -0.13 -0.26 10.05 22.27 0.22 -0.04 16 25 C -0.14 -0.31 9.70 22.27 0.22 -0.09 16 26 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.07 -0.29 8.09 -2.39 -0.02 -0.30 16 28 H 0.07 -0.21 8.09 -2.39 -0.02 -0.23 16 29 H 0.13 -0.44 8.05 -2.91 -0.02 -0.47 16 30 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.09 -0.31 7.71 -2.39 -0.02 -0.33 16 32 H 0.42 -4.66 8.70 -92.70 -0.81 -5.47 16 33 H 0.13 -1.37 8.14 -2.39 -0.02 -1.39 16 34 H 0.15 -1.54 8.14 -2.39 -0.02 -1.56 16 35 H 0.14 0.39 8.06 -2.91 -0.02 0.36 16 36 H 0.15 0.11 6.24 -2.91 -0.02 0.09 16 37 H 0.10 0.38 7.96 -2.39 -0.02 0.36 16 38 H 0.40 -2.72 8.70 -74.05 -0.64 -3.36 16 39 H -0.30 -2.06 7.11 99.48 0.71 -1.35 16 40 H -0.29 -1.78 7.11 99.48 0.71 -1.08 16 41 H 0.42 -0.13 8.96 -92.71 -0.83 -0.97 16 42 H 0.09 -0.03 6.32 -2.39 -0.02 -0.05 16 43 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.13 -0.10 6.68 -2.91 -0.02 -0.11 16 45 H 0.13 -0.12 8.06 -2.91 -0.02 -0.15 16 46 H 0.13 -0.07 8.06 -2.91 -0.02 -0.09 16 Total: 0.00 -23.73 381.67 -0.48 -24.21 By element: Atomic # 1 Polarization: -16.30 SS G_CDS: -1.23 Total: -17.52 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 3.97 Total: 3.19 kcal Atomic # 7 Polarization: 1.32 SS G_CDS: -3.36 Total: -2.04 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -1.97 Total: -10.09 kcal Atomic # 14 Polarization: 0.15 SS G_CDS: 2.10 Total: 2.25 kcal Total: -23.73 -0.48 -24.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650858_14644196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.361 kcal (2) G-P(sol) polarization free energy of solvation -23.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds