Wall clock time and date at job start Tue Mar 9 2021 12:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38213 * 119.99563 * 2 1 4 4 C 1.38260 * 119.99792 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99985 * 180.02562 * 4 3 2 6 6 H 1.08998 * 112.84923 * 348.80090 * 5 4 3 7 7 C 1.53779 * 113.61413 * 120.00634 * 5 4 3 8 8 C 1.53774 * 87.08313 * 139.97980 * 7 5 4 9 9 H 1.08996 * 113.61424 * 219.92915 * 8 7 5 10 10 N 1.46509 * 113.61485 * 89.11300 * 8 7 5 11 11 C 1.34774 * 119.99802 * 156.53095 * 10 8 7 12 12 O 1.21281 * 120.00449 * 359.97438 * 11 10 8 13 13 C 1.50702 * 119.99848 * 180.02562 * 11 10 8 14 14 C 1.53540 * 109.82344 * 79.99601 * 13 11 10 15 15 C 1.53042 * 108.55994 * 180.48693 * 14 13 11 16 16 C 1.50203 * 110.31770 * 310.43133 * 15 14 13 17 17 C 1.50703 * 118.54380 * 200.07417 * 16 15 14 18 18 O 1.42898 * 109.47096 * 69.97432 * 17 16 15 19 19 Si 1.86297 * 109.46990 * 189.97849 * 17 16 15 20 20 C 1.31113 * 122.90900 * 20.04840 * 16 15 14 21 21 N 1.38927 * 121.84612 * 359.85834 * 20 16 15 22 22 C 1.53782 * 87.17424 * 334.52513 * 8 7 5 23 23 C 1.38218 * 120.00068 * 0.27702 * 4 3 2 24 24 C 1.38260 * 119.99639 * 359.51412 * 23 4 3 25 25 C 1.38209 * 120.00273 * 0.43846 * 24 23 4 26 26 H 1.08998 * 109.47180 * 90.00791 * 1 2 3 27 27 H 1.09004 * 109.47431 * 210.00281 * 1 2 3 28 28 H 1.08996 * 109.47955 * 330.00220 * 1 2 3 29 29 H 1.07993 * 120.00407 * 359.97336 * 3 2 1 30 30 H 1.08998 * 113.61604 * 25.42703 * 7 5 4 31 31 H 1.09001 * 113.68553 * 254.53898 * 7 5 4 32 32 H 0.97001 * 119.99650 * 336.52547 * 10 8 7 33 33 H 1.09006 * 109.86456 * 319.09672 * 13 11 10 34 34 H 1.08997 * 109.62136 * 60.76852 * 14 13 11 35 35 H 1.08994 * 109.61922 * 300.20990 * 14 13 11 36 36 H 1.09003 * 109.32645 * 190.16927 * 15 14 13 37 37 H 1.09008 * 109.18792 * 70.60498 * 15 14 13 38 38 H 1.09004 * 109.46773 * 309.97792 * 17 16 15 39 39 H 0.96702 * 113.99866 * 60.00655 * 18 17 16 40 40 H 1.48499 * 109.99765 * 180.02562 * 19 17 16 41 41 H 1.48500 * 110.00015 * 301.31531 * 19 17 16 42 42 H 1.08002 * 119.07306 * 179.56986 * 20 16 15 43 43 H 0.97002 * 120.55587 * 193.05468 * 21 20 16 44 44 H 1.09000 * 113.61633 * 140.02162 * 22 8 7 45 45 H 1.09002 * 113.61117 * 270.92856 * 22 8 7 46 46 H 1.07996 * 120.00030 * 179.72100 * 23 4 3 47 47 H 1.08000 * 119.99648 * 180.27620 * 24 23 4 48 48 H 1.07997 * 120.00340 * 179.84010 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1970 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5022 0.0011 6 1 3.6923 3.3614 -0.1940 7 6 5.2518 2.6831 1.2217 8 6 6.2808 3.2976 0.2583 9 1 7.3076 2.9970 0.4664 10 7 6.1351 4.7456 0.0894 11 6 7.1873 5.4866 -0.3106 12 8 8.2550 4.9549 -0.5305 13 6 7.0376 6.9762 -0.4838 14 6 7.1234 7.6704 0.8830 15 6 6.9560 9.1774 0.6753 16 6 7.8723 9.6588 -0.4132 17 6 8.2103 11.1262 -0.4733 18 8 9.0514 11.4669 0.6305 19 14 9.0998 11.4937 -2.0685 20 6 8.3914 8.8589 -1.3130 21 7 8.1288 7.4947 -1.3198 22 6 5.6127 2.4771 -0.8576 23 6 4.2717 0.0001 -0.0047 24 6 3.5804 -1.1973 -0.0004 25 6 2.1983 -1.1974 0.0001 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3635 0.8899 0.5138 29 1 1.6580 2.1323 -0.0004 30 1 5.5772 1.7428 1.6665 31 1 4.8671 3.3889 1.9580 32 1 5.2812 5.1709 0.2655 33 1 6.0793 7.2001 -0.9526 34 1 8.0944 7.4690 1.3355 35 1 6.3301 7.3000 1.5321 36 1 7.1931 9.6980 1.6031 37 1 5.9233 9.3882 0.3971 38 1 7.2927 11.7127 -0.4255 39 1 9.8878 10.9821 0.6520 40 1 9.4393 12.9376 -2.1397 41 1 10.3365 10.6766 -2.1603 42 1 9.0377 9.2728 -2.0729 43 1 8.6595 6.8930 -1.8651 44 1 5.5183 3.0169 -1.7998 45 1 6.0367 1.4804 -0.9803 46 1 5.3517 0.0002 -0.0089 47 1 4.1205 -2.1325 0.0001 48 1 1.6584 -2.1326 0.0009 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650858_15413834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:51:57 Heat of formation + Delta-G solvation = 2.849219 kcal Electronic energy + Delta-G solvation = -27303.204715 eV Core-core repulsion = 23518.182405 eV Total energy + Delta-G solvation = -3785.022309 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.77545 -40.83878 -39.69271 -38.78802 -37.44579 -34.87942 -33.45402 -33.20200 -32.83380 -31.73712 -27.92120 -27.61270 -26.68051 -26.04122 -25.32781 -23.71784 -23.05063 -22.22156 -21.76353 -19.88548 -19.44267 -19.02465 -18.18938 -17.64784 -17.24728 -16.79302 -16.54288 -16.21618 -16.19853 -15.89710 -15.62696 -15.29568 -15.23660 -14.98792 -14.73046 -14.55611 -14.32093 -14.12894 -13.96267 -13.91365 -13.68423 -13.43830 -13.14590 -13.02479 -12.91999 -12.76698 -12.67931 -12.32827 -12.14786 -11.94669 -11.71071 -11.66518 -11.63159 -11.23509 -11.16860 -10.91509 -10.31558 -10.15084 -9.66731 -9.43532 -8.45617 -4.90538 0.42910 0.49433 1.33859 1.39731 1.46245 1.58184 1.86166 1.99816 2.63671 2.79793 3.46622 3.49730 3.60612 3.67670 3.72075 3.77777 3.88208 3.94218 4.01467 4.07050 4.08235 4.20682 4.27037 4.33309 4.47517 4.50271 4.55716 4.61507 4.64407 4.67306 4.76678 4.76963 4.80835 4.82404 4.84986 4.92928 5.00760 5.03902 5.06670 5.14726 5.20194 5.22983 5.31177 5.31521 5.51279 5.59340 5.59445 5.71916 5.75660 6.14712 6.24656 6.45629 6.61374 6.81051 7.10497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.128 4.128 4 C -0.074 4.074 5 C -0.064 4.064 6 H 0.113 0.887 7 C -0.124 4.124 8 C 0.117 3.883 9 H 0.083 0.917 10 N -0.692 5.692 11 C 0.515 3.485 12 O -0.575 6.575 13 C 0.139 3.861 14 C -0.121 4.121 15 C -0.054 4.054 16 C -0.280 4.280 17 C -0.056 4.056 18 O -0.557 6.557 19 Si 0.747 3.253 20 C 0.137 3.863 21 N -0.737 5.737 22 C -0.142 4.142 23 C -0.134 4.134 24 C -0.126 4.126 25 C -0.141 4.141 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.419 0.581 33 H 0.119 0.881 34 H 0.051 0.949 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.381 0.619 40 H -0.312 1.312 41 H -0.291 1.291 42 H 0.141 0.859 43 H 0.406 0.594 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.676 -1.608 -0.707 6.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.074 4.074 5 C -0.082 4.082 6 H 0.131 0.869 7 C -0.162 4.162 8 C 0.012 3.988 9 H 0.101 0.899 10 N -0.344 5.344 11 C 0.302 3.698 12 O -0.454 6.454 13 C 0.030 3.970 14 C -0.160 4.160 15 C -0.091 4.091 16 C -0.290 4.290 17 C -0.167 4.167 18 O -0.365 6.365 19 Si 0.655 3.345 20 C 0.016 3.984 21 N -0.369 5.369 22 C -0.180 4.180 23 C -0.152 4.152 24 C -0.144 4.144 25 C -0.159 4.159 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.152 0.848 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.257 0.743 33 H 0.136 0.864 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.133 0.867 39 H 0.229 0.771 40 H -0.241 1.241 41 H -0.218 1.218 42 H 0.157 0.843 43 H 0.242 0.758 44 H 0.087 0.913 45 H 0.111 0.889 46 H 0.148 0.852 47 H 0.149 0.851 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.822 -1.338 -1.022 6.061 hybrid contribution 1.004 -0.502 0.729 1.339 sum -4.818 -1.841 -0.292 5.166 Atomic orbital electron populations 1.20837 0.90130 1.03440 1.02826 1.20236 0.97126 0.93346 0.99039 1.21182 0.93816 0.98128 1.01465 1.19864 0.93558 0.94956 0.98996 1.21635 0.94639 0.95000 0.96942 0.86904 1.23343 0.94729 1.01964 0.96189 1.21814 0.99862 0.79803 0.97347 0.89902 1.45490 1.13896 1.07136 1.67915 1.20920 0.83606 0.89590 0.75718 1.90726 1.28654 1.74313 1.51663 1.21109 0.93353 0.88426 0.94064 1.21835 1.03066 0.96499 0.94590 1.19985 0.98893 0.93257 0.96972 1.20916 1.10978 0.95488 1.01652 1.24836 0.98732 0.94899 0.98203 1.86540 1.33780 1.67916 1.48259 0.94555 0.82367 0.75895 0.81635 1.20595 0.97697 0.83581 0.96554 1.44374 1.37417 1.05341 1.49769 1.23579 0.95753 1.00922 0.97776 1.21192 1.00467 0.92147 1.01409 1.21384 0.94580 0.98773 0.99660 1.21296 0.94687 0.98218 1.01716 0.90744 0.91166 0.90742 0.84773 0.88582 0.89131 0.74306 0.86387 0.93058 0.88022 0.91520 0.89723 0.86677 0.77076 1.24107 1.21839 0.84258 0.75780 0.91253 0.88931 0.85223 0.85073 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.31 10.01 71.23 0.71 1.03 16 2 C -0.10 -0.09 5.88 -19.87 -0.12 -0.21 16 3 C -0.13 0.03 9.37 22.27 0.21 0.24 16 4 C -0.07 0.06 5.29 -19.86 -0.11 -0.04 16 5 C -0.06 0.34 3.87 -10.92 -0.04 0.29 16 6 H 0.11 -0.93 8.09 -2.39 -0.02 -0.95 16 7 C -0.12 0.74 7.29 31.12 0.23 0.97 16 8 C 0.12 -0.36 4.30 45.51 0.20 -0.16 16 9 H 0.08 0.16 7.50 -2.39 -0.02 0.14 16 10 N -0.69 3.68 5.26 -440.04 -2.32 1.36 16 11 C 0.52 0.16 7.09 87.66 0.62 0.78 16 12 O -0.57 -5.54 15.69 -3.03 -0.05 -5.58 16 13 C 0.14 -0.48 3.35 44.35 0.15 -0.33 16 14 C -0.12 0.42 5.48 30.79 0.17 0.59 16 15 C -0.05 0.13 5.85 29.71 0.17 0.31 16 16 C -0.28 0.22 5.37 -16.76 -0.09 0.13 16 17 C -0.06 -0.02 2.81 71.24 0.20 0.18 16 18 O -0.56 -2.50 12.88 -148.98 -1.92 -4.42 16 19 Si 0.75 -0.30 29.95 68.60 2.05 1.76 16 20 C 0.14 -0.13 9.62 83.42 0.80 0.67 16 21 N -0.74 0.29 5.47 -329.21 -1.80 -1.51 16 22 C -0.14 0.45 7.27 31.21 0.23 0.68 16 23 C -0.13 -0.04 8.63 22.27 0.19 0.16 16 24 C -0.13 -0.15 10.05 22.27 0.22 0.07 16 25 C -0.14 -0.22 9.70 22.27 0.22 -0.01 16 26 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.07 -0.24 8.09 -2.38 -0.02 -0.26 16 28 H 0.07 -0.32 8.09 -2.39 -0.02 -0.34 16 29 H 0.13 -0.53 8.05 -2.91 -0.02 -0.55 16 30 H 0.10 -0.47 7.73 -2.39 -0.02 -0.48 16 31 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 32 H 0.42 -4.87 8.70 -92.71 -0.81 -5.67 16 33 H 0.12 -0.99 8.14 -2.38 -0.02 -1.00 16 34 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 36 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.08 -0.47 8.14 -2.38 -0.02 -0.49 16 38 H 0.12 -0.13 7.96 -2.38 -0.02 -0.15 16 39 H 0.38 -0.11 8.70 -74.06 -0.64 -0.75 16 40 H -0.31 -2.57 7.11 99.48 0.71 -1.86 16 41 H -0.29 -1.08 6.84 99.48 0.68 -0.40 16 42 H 0.14 -0.40 4.30 -2.91 -0.01 -0.41 16 43 H 0.41 0.40 8.09 -92.71 -0.75 -0.35 16 44 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 45 H 0.09 -0.23 6.30 -2.39 -0.02 -0.24 16 46 H 0.13 -0.29 6.64 -2.91 -0.02 -0.31 16 47 H 0.13 -0.23 8.06 -2.91 -0.02 -0.26 16 48 H 0.13 -0.13 8.06 -2.91 -0.02 -0.15 16 Total: 0.00 -18.24 383.92 -1.26 -19.50 By element: Atomic # 1 Polarization: -15.24 SS G_CDS: -1.20 Total: -16.44 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 3.96 Total: 5.34 kcal Atomic # 7 Polarization: 3.97 SS G_CDS: -4.12 Total: -0.15 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -1.97 Total: -10.01 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: 2.05 Total: 1.76 kcal Total: -18.24 -1.26 -19.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650858_15413834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.348 kcal (2) G-P(sol) polarization free energy of solvation -18.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds