Wall clock time and date at job start Tue Mar 9 2021 12:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38215 * 119.99534 * 2 1 4 4 C 1.38260 * 119.99681 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.99754 * 179.97438 * 4 3 2 6 6 H 1.08998 * 112.85657 * 11.19712 * 5 4 3 7 7 C 1.53786 * 113.61584 * 142.50480 * 5 4 3 8 8 C 1.53786 * 87.08123 * 139.97706 * 7 5 4 9 9 H 1.08996 * 113.61495 * 220.01536 * 8 7 5 10 10 N 1.46502 * 113.68901 * 89.12875 * 8 7 5 11 11 C 1.34777 * 120.00252 * 107.46243 * 10 8 7 12 12 O 1.21282 * 119.99512 * 359.97438 * 11 10 8 13 13 C 1.50696 * 120.00287 * 179.97438 * 11 10 8 14 14 O 1.42897 * 109.47135 * 180.02562 * 13 11 10 15 15 C 1.35905 * 117.00031 * 180.02562 * 14 13 11 16 16 C 1.38738 * 120.05229 * 359.72469 * 15 14 13 17 17 C 1.38142 * 119.93974 * 179.69976 * 16 15 14 18 18 C 1.38273 * 120.05669 * 0.60068 * 17 16 15 19 19 C 1.50697 * 119.94233 * 179.70144 * 18 17 16 20 20 O 1.42903 * 109.47053 * 119.97784 * 19 18 17 21 21 Si 1.86300 * 109.47539 * 359.97403 * 19 18 17 22 22 C 1.38262 * 120.10875 * 359.67309 * 18 17 16 23 23 C 1.38144 * 120.05719 * 0.02853 * 22 18 17 24 24 C 1.53781 * 87.08247 * 334.57074 * 8 7 5 25 25 C 1.38211 * 120.00003 * 359.97438 * 4 3 2 26 26 C 1.38258 * 120.00163 * 359.80844 * 25 4 3 27 27 C 1.38211 * 119.99779 * 0.44980 * 26 25 4 28 28 H 1.09002 * 109.46776 * 269.96948 * 1 2 3 29 29 H 1.08993 * 109.47429 * 29.97620 * 1 2 3 30 30 H 1.08998 * 109.46961 * 149.97871 * 1 2 3 31 31 H 1.07996 * 120.00479 * 359.97438 * 3 2 1 32 32 H 1.08996 * 113.61135 * 254.52523 * 7 5 4 33 33 H 1.09003 * 113.61071 * 25.43243 * 7 5 4 34 34 H 0.97006 * 119.99956 * 287.46699 * 10 8 7 35 35 H 1.09000 * 109.46969 * 300.00425 * 13 11 10 36 36 H 1.09001 * 109.47221 * 60.00158 * 13 11 10 37 37 H 1.07998 * 120.02759 * 0.02562 * 16 15 14 38 38 H 1.08004 * 119.97238 * 180.32138 * 17 16 15 39 39 H 1.09003 * 109.46853 * 239.97716 * 19 18 17 40 40 H 0.96698 * 113.99963 * 299.98998 * 20 19 18 41 41 H 1.48495 * 110.00123 * 180.02562 * 21 19 18 42 42 H 1.48503 * 109.99960 * 301.32191 * 21 19 18 43 43 H 1.08006 * 119.96906 * 180.02562 * 22 18 17 44 44 H 1.08005 * 120.02879 * 180.02562 * 23 22 18 45 45 H 1.09003 * 113.61068 * 270.88390 * 24 8 7 46 46 H 1.08999 * 113.61730 * 139.98238 * 24 8 7 47 47 H 1.08004 * 119.99437 * 179.97438 * 25 4 3 48 48 H 1.07998 * 119.99837 * 180.23023 * 26 25 4 49 49 H 1.08002 * 120.00200 * 179.78851 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1970 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3340 2.5022 -0.0011 6 1 3.6924 3.3615 0.1940 7 6 5.6105 2.4770 0.8561 8 6 6.2808 3.2977 -0.2585 9 1 7.3075 2.9959 -0.4657 10 7 6.1364 4.7459 -0.0911 11 6 7.1969 5.4907 0.2789 12 8 8.2708 4.9618 0.4738 13 6 7.0485 6.9805 0.4505 14 8 8.3026 7.5421 0.8427 15 6 8.3417 8.8860 1.0413 16 6 7.1979 9.6492 0.8568 17 6 7.2387 11.0142 1.0653 18 6 8.4212 11.6216 1.4455 19 6 8.4645 13.1117 1.6658 20 8 8.8516 13.3829 3.0144 21 14 6.7780 13.8360 1.3462 22 6 9.5638 10.8639 1.6246 23 6 9.5267 9.4977 1.4233 24 6 5.2516 2.6832 -1.2218 25 6 4.2717 0.0001 -0.0005 26 6 3.5805 -1.1972 0.0040 27 6 2.1984 -1.1973 -0.0009 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6580 2.1323 -0.0004 32 1 5.5145 3.0167 1.7982 33 1 6.0341 1.4802 0.9793 34 1 5.2773 5.1688 -0.2466 35 1 6.7308 7.4250 -0.4927 36 1 6.3023 7.1853 1.2182 37 1 6.2751 9.1758 0.5554 38 1 6.3473 11.6080 0.9268 39 1 9.1872 13.5590 0.9833 40 1 8.2523 13.0139 3.6774 41 1 6.8076 15.3053 1.5595 42 1 6.3503 13.5334 -0.0433 43 1 10.4862 11.3407 1.9220 44 1 10.4194 8.9063 1.5637 45 1 5.5771 1.7428 -1.6667 46 1 4.8659 3.3893 -1.9572 47 1 5.3517 0.0003 -0.0014 48 1 4.1205 -2.1325 0.0078 49 1 1.6584 -2.1326 -0.0008 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650858_2989410.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:10 Heat of formation + Delta-G solvation = -21.669272 kcal Electronic energy + Delta-G solvation = -29173.730746 eV Core-core repulsion = 25033.474293 eV Total energy + Delta-G solvation = -4140.256454 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77094 -41.25539 -40.34907 -39.23850 -38.63236 -37.10422 -34.85369 -33.35877 -32.42495 -31.92798 -31.68430 -29.57946 -27.76401 -26.68096 -26.37399 -25.89705 -24.05719 -23.05147 -22.61329 -22.02750 -21.75261 -19.88405 -19.47707 -18.46735 -18.18105 -17.64275 -17.41627 -17.12355 -16.80225 -16.50883 -16.22084 -16.05392 -15.93274 -15.57800 -15.54767 -15.16944 -14.89210 -14.71411 -14.64426 -14.38198 -14.31494 -13.98653 -13.81837 -13.75787 -13.54961 -13.47391 -13.38463 -13.02091 -12.77432 -12.68709 -12.24787 -12.14640 -12.06903 -12.05014 -11.73723 -11.68293 -11.64024 -11.17590 -11.03884 -10.40157 -10.18419 -10.04277 -9.66390 -9.43368 -9.22371 -4.98084 0.27577 0.30928 0.43132 0.49751 1.35094 1.40840 1.45104 1.65301 1.99799 2.57212 2.66059 2.79993 3.46444 3.49131 3.56997 3.67620 3.70531 3.74762 3.83283 3.93950 3.96133 4.01626 4.03577 4.07763 4.10975 4.20758 4.27405 4.31064 4.42674 4.50507 4.51064 4.56145 4.63885 4.67232 4.76745 4.76971 4.81292 4.84466 4.92828 4.97312 5.00680 5.03954 5.13664 5.15847 5.20534 5.25483 5.31724 5.49702 5.50079 5.59735 5.69839 5.72210 5.75832 6.14996 6.25942 6.45409 6.80269 7.11000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.097 4.097 3 C -0.127 4.127 4 C -0.073 4.073 5 C -0.063 4.063 6 H 0.116 0.884 7 C -0.143 4.143 8 C 0.116 3.884 9 H 0.082 0.918 10 N -0.691 5.691 11 C 0.515 3.485 12 O -0.573 6.573 13 C 0.037 3.963 14 O -0.321 6.321 15 C 0.121 3.879 16 C -0.199 4.199 17 C -0.076 4.076 18 C -0.161 4.161 19 C -0.074 4.074 20 O -0.559 6.559 21 Si 0.783 3.217 22 C -0.061 4.061 23 C -0.167 4.167 24 C -0.123 4.123 25 C -0.135 4.135 26 C -0.126 4.126 27 C -0.142 4.142 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.422 0.578 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.166 0.834 38 H 0.154 0.846 39 H 0.102 0.898 40 H 0.395 0.605 41 H -0.304 1.304 42 H -0.280 1.280 43 H 0.132 0.868 44 H 0.125 0.875 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.129 0.871 48 H 0.131 0.869 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.541 -0.007 -0.675 9.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.073 4.073 5 C -0.082 4.082 6 H 0.134 0.866 7 C -0.182 4.182 8 C 0.011 3.989 9 H 0.100 0.900 10 N -0.345 5.345 11 C 0.301 3.699 12 O -0.451 6.451 13 C -0.041 4.041 14 O -0.234 6.234 15 C 0.075 3.925 16 C -0.217 4.217 17 C -0.093 4.093 18 C -0.162 4.162 19 C -0.184 4.184 20 O -0.367 6.367 21 Si 0.690 3.310 22 C -0.079 4.079 23 C -0.185 4.185 24 C -0.161 4.161 25 C -0.153 4.153 26 C -0.144 4.144 27 C -0.160 4.160 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.260 0.740 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.184 0.816 38 H 0.171 0.829 39 H 0.120 0.880 40 H 0.245 0.755 41 H -0.233 1.233 42 H -0.207 1.207 43 H 0.150 0.850 44 H 0.143 0.857 45 H 0.114 0.886 46 H 0.110 0.890 47 H 0.147 0.853 48 H 0.149 0.851 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.607 0.318 -1.296 8.710 hybrid contribution 0.622 -0.301 -0.252 0.735 sum -7.985 0.017 -1.547 8.134 Atomic orbital electron populations 1.20836 0.90102 1.03445 1.02828 1.20239 0.97137 0.93338 0.99026 1.21186 0.93765 0.98153 1.01412 1.19854 0.93575 0.94906 0.98999 1.21602 0.94594 0.95119 0.96837 0.86604 1.23551 0.95843 1.00944 0.97846 1.21831 0.99989 0.79564 0.97549 0.90006 1.45327 1.12861 1.07065 1.69235 1.20592 0.83935 0.89280 0.76066 1.90770 1.28855 1.74574 1.50906 1.22750 0.86328 0.89954 1.05040 1.86130 1.34164 1.19554 1.83539 1.19209 0.95171 0.81857 0.96224 1.21511 0.98403 0.94745 1.07056 1.21076 0.97233 0.94450 0.96563 1.20365 0.94405 0.96512 1.04905 1.25201 1.12359 0.93943 0.86885 1.86463 1.56089 1.79330 1.14829 0.93745 0.77906 0.77078 0.82320 1.20892 0.98785 0.92035 0.96211 1.20615 0.97174 0.95107 1.05651 1.23357 0.94597 1.01959 0.96209 1.21195 1.00461 0.92206 1.01430 1.21378 0.94597 0.98755 0.99680 1.21297 0.94668 0.98253 1.01733 0.90740 0.90688 0.91205 0.84635 0.91175 0.88952 0.73965 0.85558 0.85231 0.81620 0.82884 0.88043 0.75522 1.23265 1.20725 0.85026 0.85681 0.88578 0.88965 0.85296 0.85136 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.35 10.01 71.24 0.71 1.06 16 2 C -0.10 -0.07 5.88 -19.86 -0.12 -0.19 16 3 C -0.13 0.08 9.37 22.27 0.21 0.29 16 4 C -0.07 0.08 5.29 -19.87 -0.11 -0.03 16 5 C -0.06 0.35 3.86 -11.01 -0.04 0.31 16 6 H 0.12 -1.06 8.09 -2.39 -0.02 -1.08 16 7 C -0.14 0.40 7.26 31.12 0.23 0.63 16 8 C 0.12 -0.29 4.32 45.52 0.20 -0.09 16 9 H 0.08 0.26 7.46 -2.39 -0.02 0.24 16 10 N -0.69 3.63 5.27 -440.03 -2.32 1.31 16 11 C 0.51 0.96 7.91 87.66 0.69 1.65 16 12 O -0.57 -8.10 16.10 16.00 0.26 -7.84 16 13 C 0.04 -0.16 5.22 71.23 0.37 0.21 16 14 O -0.32 -1.70 9.67 -73.45 -0.71 -2.41 16 15 C 0.12 0.34 6.69 22.51 0.15 0.50 16 16 C -0.20 0.68 9.04 22.37 0.20 0.88 16 17 C -0.08 0.26 8.66 22.26 0.19 0.46 16 18 C -0.16 0.01 5.39 -19.85 -0.11 -0.09 16 19 C -0.07 0.05 2.82 71.23 0.20 0.25 16 20 O -0.56 -0.27 12.77 -148.98 -1.90 -2.18 16 21 Si 0.78 -2.85 29.78 68.60 2.04 -0.81 16 22 C -0.06 -0.17 9.60 22.25 0.21 0.04 16 23 C -0.17 -0.79 9.99 22.36 0.22 -0.57 16 24 C -0.12 0.73 7.29 31.12 0.23 0.96 16 25 C -0.14 -0.05 8.61 22.27 0.19 0.14 16 26 C -0.13 -0.16 10.05 22.27 0.22 0.06 16 27 C -0.14 -0.22 9.70 22.27 0.22 0.00 16 28 H 0.07 -0.28 8.14 -2.39 -0.02 -0.29 16 29 H 0.07 -0.36 8.08 -2.39 -0.02 -0.38 16 30 H 0.07 -0.25 8.09 -2.39 -0.02 -0.27 16 31 H 0.14 -0.62 8.05 -2.91 -0.02 -0.65 16 32 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.09 -0.17 6.31 -2.39 -0.02 -0.19 16 34 H 0.42 -5.55 8.70 -92.70 -0.81 -6.35 16 35 H 0.13 -1.37 7.65 -2.39 -0.02 -1.39 16 36 H 0.13 -1.47 7.67 -2.39 -0.02 -1.49 16 37 H 0.17 -1.84 6.30 -2.91 -0.02 -1.86 16 38 H 0.15 -1.34 4.87 -2.91 -0.01 -1.35 16 39 H 0.10 0.11 7.96 -2.39 -0.02 0.09 16 40 H 0.39 -3.04 8.70 -74.06 -0.64 -3.69 16 41 H -0.30 -1.40 7.11 99.48 0.71 -0.70 16 42 H -0.28 -0.01 7.11 99.48 0.71 0.70 16 43 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 44 H 0.13 0.69 8.06 -2.91 -0.02 0.66 16 45 H 0.10 -0.45 7.72 -2.39 -0.02 -0.47 16 46 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 47 H 0.13 -0.25 6.66 -2.91 -0.02 -0.27 16 48 H 0.13 -0.20 8.06 -2.91 -0.02 -0.23 16 49 H 0.13 -0.13 8.06 -2.91 -0.02 -0.15 16 Total: 0.00 -26.25 403.74 1.02 -25.23 By element: Atomic # 1 Polarization: -19.35 SS G_CDS: -0.43 Total: -19.78 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 4.08 Total: 6.48 kcal Atomic # 7 Polarization: 3.63 SS G_CDS: -2.32 Total: 1.31 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -2.35 Total: -12.43 kcal Atomic # 14 Polarization: -2.85 SS G_CDS: 2.04 Total: -0.81 kcal Total: -26.25 1.02 -25.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650858_2989410.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.563 kcal (2) G-P(sol) polarization free energy of solvation -26.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds