Wall clock time and date at job start Tue Mar 9 2021 12:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38211 * 120.00354 * 2 1 4 4 C 1.38260 * 120.00044 * 180.24931 * 3 2 1 5 5 C 1.50699 * 119.99883 * 179.76380 * 4 3 2 6 6 H 1.09003 * 112.85141 * 348.53094 * 5 4 3 7 7 C 1.53778 * 113.61329 * 119.72884 * 5 4 3 8 8 C 1.53781 * 87.08077 * 140.06385 * 7 5 4 9 9 H 1.09003 * 113.61175 * 219.93623 * 8 7 5 10 10 N 1.46500 * 113.61496 * 89.11909 * 8 7 5 11 11 C 1.34771 * 120.00273 * 155.00107 * 10 8 7 12 12 O 1.21287 * 119.99947 * 359.97438 * 11 10 8 13 13 C 1.50699 * 120.00100 * 179.97438 * 11 10 8 14 14 O 1.42903 * 109.46855 * 179.97438 * 13 11 10 15 15 C 1.35905 * 116.99613 * 179.97438 * 14 13 11 16 16 C 1.38714 * 120.05255 * 180.25166 * 15 14 13 17 17 C 1.38167 * 119.94097 * 180.25813 * 16 15 14 18 18 C 1.50702 * 119.97190 * 179.75193 * 17 16 15 19 19 O 1.42892 * 109.47242 * 64.71938 * 18 17 16 20 20 Si 1.86298 * 109.46915 * 184.72476 * 18 17 16 21 21 C 1.38245 * 120.05417 * 359.46773 * 17 16 15 22 22 C 1.38285 * 120.11218 * 0.28234 * 21 17 16 23 23 C 1.38114 * 120.05813 * 359.97438 * 22 21 17 24 24 C 1.53778 * 113.68840 * 217.26517 * 5 4 3 25 25 C 1.38210 * 119.99722 * 359.49451 * 4 3 2 26 26 C 1.38251 * 120.00239 * 0.24895 * 25 4 3 27 27 C 1.38219 * 120.00225 * 0.02562 * 26 25 4 28 28 H 1.09001 * 109.47586 * 270.23606 * 1 2 3 29 29 H 1.08999 * 109.47069 * 30.23579 * 1 2 3 30 30 H 1.08999 * 109.47328 * 150.23009 * 1 2 3 31 31 H 1.08004 * 119.99921 * 0.02562 * 3 2 1 32 32 H 1.09003 * 113.61837 * 25.51540 * 7 5 4 33 33 H 1.09004 * 113.61748 * 254.61185 * 7 5 4 34 34 H 0.97006 * 119.99768 * 334.99417 * 10 8 7 35 35 H 1.08999 * 109.46951 * 59.99946 * 13 11 10 36 36 H 1.08999 * 109.47268 * 299.99561 * 13 11 10 37 37 H 1.08001 * 120.03235 * 359.97438 * 16 15 14 38 38 H 1.09000 * 109.46724 * 304.71984 * 18 17 16 39 39 H 0.96703 * 114.00176 * 180.02562 * 19 18 17 40 40 H 1.48506 * 109.99834 * 178.68053 * 20 18 17 41 41 H 1.48502 * 110.00011 * 299.99318 * 20 18 17 42 42 H 1.08005 * 119.94046 * 180.25212 * 21 17 16 43 43 H 1.08004 * 119.97228 * 179.97438 * 22 21 17 44 44 H 1.07997 * 120.03410 * 179.97438 * 23 22 21 45 45 H 1.08997 * 113.61753 * 105.46294 * 24 5 4 46 46 H 1.09006 * 113.61746 * 334.55190 * 24 5 4 47 47 H 1.07997 * 119.99769 * 180.27967 * 25 4 3 48 48 H 1.08004 * 120.00048 * 180.02562 * 26 25 4 49 49 H 1.07996 * 120.00281 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1969 0.0000 4 6 3.5807 1.1968 -0.0052 5 6 4.3342 2.5019 -0.0106 6 1 3.6926 3.3603 -0.2096 7 6 5.2519 2.6883 1.2092 8 6 6.2802 3.3004 0.2433 9 1 7.3074 3.0016 0.4523 10 7 6.1329 4.7475 0.0692 11 6 7.1921 5.4926 -0.3040 12 8 8.2674 4.9652 -0.4953 13 6 7.0405 6.9812 -0.4836 14 8 8.2937 7.5435 -0.8778 15 6 8.3299 8.8864 -1.0836 16 6 9.5126 9.4979 -1.4729 17 6 9.5481 10.8640 -1.6762 18 6 10.8339 11.5298 -2.0939 19 8 11.2125 11.0637 -3.3905 20 14 10.5893 13.3760 -2.1445 21 6 8.4036 11.6199 -1.5026 22 6 7.2222 11.0119 -1.1195 23 6 7.1827 9.6473 -0.9099 24 6 5.6105 2.4749 -0.8680 25 6 4.2717 -0.0001 0.0001 26 6 3.5804 -1.1974 0.0055 27 6 2.1982 -1.1974 0.0050 28 1 -0.3634 0.0042 1.0276 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3634 -0.8920 -0.5102 31 1 1.6581 2.1323 0.0004 32 1 5.5786 1.7500 1.6574 33 1 4.8657 3.3968 1.9421 34 1 5.2730 5.1695 0.2224 35 1 6.7211 7.4300 0.4570 36 1 6.2945 7.1802 -1.2530 37 1 10.4059 8.9073 -1.6126 38 1 11.6183 11.2868 -1.3770 39 1 12.0336 11.4509 -3.7234 40 1 11.8589 14.0463 -2.5242 41 1 9.5223 13.7204 -3.1183 42 1 8.4325 12.6871 -1.6660 43 1 6.3295 11.6046 -0.9841 44 1 6.2599 9.1729 -0.6103 45 1 5.5137 3.0110 -1.8121 46 1 6.0352 1.4781 -0.9877 47 1 5.3516 -0.0002 0.0006 48 1 4.1203 -2.1327 0.0101 49 1 1.6582 -2.1326 0.0087 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650858_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:52 Heat of formation + Delta-G solvation = -20.036575 kcal Electronic energy + Delta-G solvation = -29209.320699 eV Core-core repulsion = 25069.135044 eV Total energy + Delta-G solvation = -4140.185655 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78403 -41.25420 -40.35231 -39.20348 -38.61436 -37.41018 -34.87080 -33.36835 -32.60765 -32.07520 -31.51644 -29.30395 -27.77016 -26.85100 -26.69610 -25.98345 -23.66608 -23.06555 -22.92730 -21.94971 -21.59485 -19.86872 -19.20223 -18.60065 -18.35249 -17.69475 -17.43960 -17.42269 -17.08771 -16.74951 -16.31863 -16.05833 -15.80094 -15.69208 -15.58430 -15.06635 -14.90131 -14.72283 -14.53979 -14.38274 -14.14772 -14.00776 -13.81656 -13.77351 -13.58888 -13.46773 -13.29377 -13.03243 -12.81232 -12.68376 -12.52369 -12.15416 -12.13356 -12.00176 -11.72624 -11.69646 -11.64747 -11.19033 -11.05993 -10.55576 -10.20358 -9.92071 -9.67418 -9.44389 -9.29029 -4.92041 0.19926 0.38853 0.42122 0.48765 1.26074 1.38488 1.45328 1.61721 1.94367 2.54972 2.63095 2.78961 3.37711 3.44984 3.49004 3.66236 3.69551 3.79190 3.83262 3.92604 3.99991 4.00574 4.06524 4.08769 4.12919 4.19302 4.25139 4.26369 4.26918 4.48240 4.49461 4.54987 4.62515 4.65271 4.75400 4.75454 4.80705 4.83090 4.91601 4.97334 4.98998 5.02889 5.12069 5.19393 5.23028 5.30792 5.36109 5.46019 5.48303 5.58752 5.68173 5.71151 5.74675 6.13980 6.25926 6.43979 6.55182 7.08850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.128 4.128 4 C -0.073 4.073 5 C -0.064 4.064 6 H 0.115 0.885 7 C -0.122 4.122 8 C 0.116 3.884 9 H 0.082 0.918 10 N -0.691 5.691 11 C 0.515 3.485 12 O -0.573 6.573 13 C 0.038 3.962 14 O -0.323 6.323 15 C 0.114 3.886 16 C -0.150 4.150 17 C -0.048 4.048 18 C -0.098 4.098 19 O -0.561 6.561 20 Si 0.783 3.217 21 C -0.161 4.161 22 C -0.070 4.070 23 C -0.201 4.201 24 C -0.144 4.144 25 C -0.135 4.135 26 C -0.126 4.126 27 C -0.142 4.142 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.135 0.865 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.422 0.578 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.395 0.605 40 H -0.287 1.287 41 H -0.293 1.293 42 H 0.145 0.855 43 H 0.165 0.835 44 H 0.164 0.836 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.129 0.871 48 H 0.131 0.869 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 3.612 4.619 9.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.073 4.073 5 C -0.082 4.082 6 H 0.133 0.867 7 C -0.160 4.160 8 C 0.010 3.990 9 H 0.101 0.899 10 N -0.344 5.344 11 C 0.301 3.699 12 O -0.451 6.451 13 C -0.040 4.040 14 O -0.236 6.236 15 C 0.069 3.931 16 C -0.169 4.169 17 C -0.048 4.048 18 C -0.206 4.206 19 O -0.371 6.371 20 Si 0.687 3.313 21 C -0.178 4.178 22 C -0.088 4.088 23 C -0.220 4.220 24 C -0.183 4.183 25 C -0.153 4.153 26 C -0.144 4.144 27 C -0.160 4.160 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.153 0.847 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.260 0.740 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.245 0.755 40 H -0.214 1.214 41 H -0.220 1.220 42 H 0.162 0.838 43 H 0.182 0.818 44 H 0.181 0.819 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.147 0.853 48 H 0.149 0.851 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.907 3.454 4.061 8.726 hybrid contribution 0.757 -0.845 -1.050 1.546 sum -6.150 2.609 3.011 7.328 Atomic orbital electron populations 1.20836 0.90083 1.03395 1.02889 1.20236 0.97145 0.93320 0.99004 1.21183 0.93759 0.98166 1.01449 1.19844 0.93574 0.94876 0.99021 1.21596 0.94574 0.95136 0.96875 0.86703 1.23352 0.94488 1.01997 0.96146 1.21844 1.00057 0.79511 0.97553 0.89946 1.45322 1.12801 1.07186 1.69140 1.20578 0.83982 0.89215 0.76078 1.90768 1.28764 1.74574 1.51010 1.22736 0.86238 0.90063 1.04938 1.86120 1.34200 1.19694 1.83622 1.19169 0.95163 0.81971 0.96829 1.20308 0.97085 0.94567 1.04962 1.19265 0.94916 0.92586 0.98014 1.25256 0.96760 1.11956 0.86600 1.86556 1.47536 1.69815 1.33162 0.93931 0.77628 0.71201 0.88571 1.21212 0.92533 1.00503 1.03565 1.21319 0.98460 0.94000 0.95001 1.21640 0.97880 0.95492 1.06963 1.23555 0.95956 1.00939 0.97827 1.21190 1.00462 0.92205 1.01437 1.21380 0.94596 0.98746 0.99648 1.21304 0.94669 0.98260 1.01721 0.90599 0.90786 0.91225 0.84681 0.88467 0.88875 0.73972 0.85247 0.85752 0.86899 0.89281 0.75490 1.21431 1.21995 0.83770 0.81772 0.81856 0.91365 0.88903 0.85302 0.85097 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.30 10.01 71.24 0.71 1.01 16 2 C -0.10 -0.12 5.88 -19.87 -0.12 -0.24 16 3 C -0.13 0.00 9.37 22.27 0.21 0.21 16 4 C -0.07 0.03 5.29 -19.87 -0.11 -0.08 16 5 C -0.06 0.29 3.85 -11.02 -0.04 0.25 16 6 H 0.11 -0.93 8.10 -2.39 -0.02 -0.95 16 7 C -0.12 0.64 7.29 31.12 0.23 0.87 16 8 C 0.12 -0.17 4.32 45.52 0.20 0.03 16 9 H 0.08 0.34 7.46 -2.39 -0.02 0.32 16 10 N -0.69 2.73 5.26 -440.03 -2.32 0.41 16 11 C 0.51 1.82 7.91 87.66 0.69 2.51 16 12 O -0.57 -9.07 16.10 15.99 0.26 -8.81 16 13 C 0.04 -0.09 5.22 71.24 0.37 0.29 16 14 O -0.32 -2.61 9.67 -73.45 -0.71 -3.32 16 15 C 0.11 0.67 6.69 22.51 0.15 0.82 16 16 C -0.15 -1.30 9.62 22.37 0.22 -1.09 16 17 C -0.05 -0.24 5.38 -19.88 -0.11 -0.35 16 18 C -0.10 -0.22 2.79 71.24 0.20 -0.02 16 19 O -0.56 -3.20 12.81 -148.98 -1.91 -5.10 16 20 Si 0.78 -1.17 29.85 68.60 2.05 0.88 16 21 C -0.16 -0.13 8.67 22.28 0.19 0.07 16 22 C -0.07 0.17 10.04 22.25 0.22 0.39 16 23 C -0.20 0.27 9.04 22.36 0.20 0.47 16 24 C -0.14 0.25 7.26 31.12 0.23 0.47 16 25 C -0.14 -0.13 8.61 22.27 0.19 0.06 16 26 C -0.13 -0.22 10.05 22.27 0.22 0.00 16 27 C -0.14 -0.28 9.70 22.27 0.22 -0.06 16 28 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.07 -0.30 8.09 -2.39 -0.02 -0.32 16 30 H 0.07 -0.22 8.09 -2.39 -0.02 -0.24 16 31 H 0.14 -0.52 8.06 -2.91 -0.02 -0.54 16 32 H 0.10 -0.41 7.72 -2.39 -0.02 -0.43 16 33 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.42 -5.01 8.70 -92.70 -0.81 -5.81 16 35 H 0.13 -1.22 7.66 -2.39 -0.02 -1.24 16 36 H 0.12 -1.07 7.66 -2.39 -0.02 -1.08 16 37 H 0.11 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.09 -0.06 7.96 -2.39 -0.02 -0.08 16 39 H 0.39 -1.11 8.74 -74.06 -0.65 -1.76 16 40 H -0.29 -0.75 7.11 99.48 0.71 -0.04 16 41 H -0.29 -1.37 7.05 99.48 0.70 -0.67 16 42 H 0.15 -0.45 4.86 -2.91 -0.01 -0.47 16 43 H 0.16 -1.50 8.06 -2.91 -0.02 -1.52 16 44 H 0.16 -1.47 6.30 -2.91 -0.02 -1.49 16 45 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.09 -0.08 6.32 -2.38 -0.02 -0.10 16 47 H 0.13 -0.17 6.67 -2.91 -0.02 -0.19 16 48 H 0.13 -0.15 8.06 -2.91 -0.02 -0.18 16 49 H 0.13 -0.08 8.06 -2.91 -0.02 -0.11 16 Total: 0.00 -28.08 403.87 1.01 -27.07 By element: Atomic # 1 Polarization: -16.30 SS G_CDS: -0.44 Total: -16.74 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 4.08 Total: 5.61 kcal Atomic # 7 Polarization: 2.73 SS G_CDS: -2.32 Total: 0.41 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -2.36 Total: -17.23 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.05 Total: 0.88 kcal Total: -28.08 1.01 -27.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650858_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.034 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds