Wall clock time and date at job start Tue Mar 9 2021 12:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35969 * 116.99676 * 2 1 4 4 C 1.39451 * 120.11968 * 179.97438 * 3 2 1 5 5 O 1.34776 * 133.23917 * 0.40049 * 4 3 2 6 6 C 1.34926 * 110.84416 * 180.02562 * 5 4 3 7 7 C 1.46989 * 125.14734 * 179.81498 * 6 5 4 8 8 O 1.21650 * 120.00699 * 179.69479 * 7 6 5 9 9 N 1.34774 * 119.99497 * 359.69518 * 7 6 5 10 10 C 1.46506 * 119.99981 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.85063 * 23.80349 * 10 9 7 12 12 C 1.53781 * 113.61613 * 154.99882 * 10 9 7 13 13 C 1.53786 * 87.17350 * 89.15811 * 12 10 9 14 14 H 1.09000 * 113.60973 * 270.92699 * 13 12 10 15 15 C 1.50690 * 113.61518 * 140.02616 * 13 12 10 16 16 C 1.38220 * 119.99778 * 299.72337 * 15 13 12 17 17 C 1.38256 * 119.99895 * 179.74837 * 16 15 13 18 18 C 1.38212 * 120.00132 * 0.54895 * 17 16 15 19 19 C 1.38265 * 119.99938 * 359.70356 * 18 17 16 20 20 C 1.50699 * 120.00153 * 179.97438 * 19 18 17 21 21 C 1.38219 * 119.99700 * 0.02562 * 19 18 17 22 22 C 1.53781 * 113.68810 * 252.53321 * 10 9 7 23 23 C 1.35810 * 109.71639 * 359.55039 * 6 5 4 24 24 C 1.40605 * 119.14109 * 179.97438 * 4 3 2 25 25 C 1.39783 * 120.11501 * 0.04272 * 24 4 3 26 26 C 1.50702 * 120.09206 * 179.97438 * 25 24 4 27 27 O 1.42899 * 109.47190 * 284.99776 * 26 25 24 28 28 Si 1.86301 * 109.46939 * 165.00419 * 26 25 24 29 29 C 1.36627 * 119.81082 * 359.97438 * 25 24 4 30 30 C 1.38260 * 120.12387 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.46895 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47590 * 300.00504 * 1 2 3 33 33 H 1.09001 * 109.46710 * 60.00678 * 1 2 3 34 34 H 0.97003 * 120.00744 * 359.97438 * 9 7 6 35 35 H 1.09002 * 113.61445 * 203.74810 * 12 10 9 36 36 H 1.09002 * 113.61408 * 334.56541 * 12 10 9 37 37 H 1.07998 * 120.00217 * 0.02562 * 16 15 13 38 38 H 1.08000 * 120.00144 * 180.27663 * 17 16 15 39 39 H 1.08003 * 120.00377 * 179.72745 * 18 17 16 40 40 H 1.08995 * 109.47325 * 270.02164 * 20 19 18 41 41 H 1.08996 * 109.46799 * 30.02683 * 20 19 18 42 42 H 1.09001 * 109.46752 * 150.02420 * 20 19 18 43 43 H 1.07992 * 119.99356 * 179.97438 * 21 19 18 44 44 H 1.09005 * 113.61471 * 25.42227 * 22 10 9 45 45 H 1.08996 * 113.61178 * 156.23569 * 22 10 9 46 46 H 1.08001 * 126.96245 * 180.24376 * 23 6 5 47 47 H 1.08994 * 109.46990 * 45.00000 * 26 25 24 48 48 H 0.96694 * 114.00161 * 180.02562 * 27 26 25 49 49 H 1.48497 * 110.00340 * 59.99650 * 28 26 25 50 50 H 1.48501 * 109.99941 * 181.32011 * 28 26 25 51 51 H 1.08006 * 119.75170 * 179.97438 * 29 25 24 52 52 H 1.07996 * 119.65704 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4386 1.2875 0.0005 5 8 4.4140 0.3574 -0.0057 6 6 5.6317 0.9387 -0.0012 7 6 6.9131 0.2185 -0.0020 8 8 7.9595 0.8389 -0.0033 9 7 6.9286 -1.1291 -0.0014 10 6 8.2057 -1.8470 -0.0017 11 1 9.0252 -1.2531 0.4031 12 6 8.1173 -3.2617 0.5945 13 6 7.7810 -3.7554 -0.8226 14 1 6.7145 -3.7427 -1.0477 15 6 8.4400 -5.0630 -1.1786 16 6 9.8185 -5.1640 -1.1809 17 6 10.4232 -6.3650 -1.5024 18 6 9.6494 -7.4616 -1.8326 19 6 8.2706 -7.3592 -1.8354 20 6 7.4269 -8.5547 -2.1960 21 6 7.6660 -6.1600 -1.5085 22 6 8.5366 -2.5188 -1.3448 23 6 5.4944 2.2898 -0.0017 24 6 4.0554 2.5511 0.0000 25 6 3.2764 3.7117 -0.0002 26 6 3.9380 5.0657 -0.0002 27 8 4.4603 5.3408 1.3012 28 14 2.6863 6.3685 -0.4550 29 6 1.9136 3.6151 -0.0004 30 6 1.2956 2.3727 -0.0005 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8898 33 1 -0.3633 0.5137 -0.8901 34 1 6.0942 -1.6239 -0.0001 35 1 9.0684 -3.6363 0.9731 36 1 7.3004 -3.3857 1.3054 37 1 10.4233 -4.3059 -0.9271 38 1 11.5002 -6.4452 -1.4999 39 1 10.1218 -8.3987 -2.0881 40 1 7.2468 -8.5614 -3.2710 41 1 7.9490 -9.4675 -1.9094 42 1 6.4747 -8.4998 -1.6684 43 1 6.5891 -6.0800 -1.5111 44 1 8.0573 -2.0433 -2.2007 45 1 9.6024 -2.6888 -1.4971 46 1 6.2873 3.0231 -0.0024 47 1 4.7505 5.0731 -0.7268 48 1 4.9008 6.1983 1.3750 49 1 1.5733 6.3686 0.5281 50 1 3.3335 7.7046 -0.4896 51 1 1.3126 4.5125 -0.0001 52 1 0.2174 2.3119 -0.0014 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650858_6672420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:19 Heat of formation + Delta-G solvation = -9.710594 kcal Electronic energy + Delta-G solvation = -35494.330737 eV Core-core repulsion = 30779.458378 eV Total energy + Delta-G solvation = -4714.872360 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.166 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.79089 -41.65827 -40.75830 -40.29122 -39.02598 -38.93756 -37.22558 -34.96592 -33.69834 -33.36691 -32.12907 -31.86381 -30.96783 -28.60773 -27.80419 -26.72081 -26.66869 -26.16391 -24.86975 -24.04033 -23.06295 -22.24597 -21.91603 -21.73313 -19.94523 -19.84023 -18.94629 -18.60038 -18.44310 -17.79963 -17.70423 -17.22282 -17.03169 -16.61483 -16.49171 -16.32700 -16.13169 -15.85478 -15.74784 -15.61741 -14.97976 -14.85879 -14.72868 -14.60195 -14.42584 -14.22843 -14.01989 -13.99754 -13.94632 -13.82020 -13.48155 -13.39561 -13.24768 -13.04241 -12.81799 -12.72051 -12.54685 -12.38778 -12.19037 -12.07528 -11.80621 -11.74429 -11.71300 -11.57820 -11.21588 -11.05004 -10.49615 -10.35633 -9.86331 -9.68049 -9.44649 -9.03308 -4.90930 -0.71021 0.06594 0.41885 0.48455 0.57622 1.13117 1.28338 1.61271 1.82423 1.83209 1.93255 2.11104 2.33682 2.78636 3.11412 3.34970 3.39868 3.52804 3.62407 3.66467 3.69470 3.78841 3.89353 3.92161 3.96155 3.99565 4.06380 4.11716 4.16152 4.26320 4.31348 4.35131 4.41326 4.42464 4.48511 4.52612 4.58721 4.71828 4.73614 4.75795 4.77277 4.79172 4.80455 4.83538 4.89269 4.96931 5.00462 5.01141 5.04966 5.17660 5.20720 5.28882 5.30381 5.40763 5.55598 5.58754 5.70363 5.73633 6.13620 6.14769 6.25719 6.57449 6.76542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.331 6.331 3 C 0.138 3.862 4 C 0.022 3.978 5 O -0.180 6.180 6 C -0.034 4.034 7 C 0.607 3.393 8 O -0.542 6.542 9 N -0.687 5.687 10 C 0.113 3.887 11 H 0.099 0.901 12 C -0.124 4.124 13 C -0.068 4.068 14 H 0.103 0.897 15 C -0.073 4.073 16 C -0.132 4.132 17 C -0.124 4.124 18 C -0.140 4.140 19 C -0.097 4.097 20 C -0.116 4.116 21 C -0.131 4.131 22 C -0.139 4.139 23 C -0.109 4.109 24 C -0.098 4.098 25 C -0.065 4.065 26 C -0.093 4.093 27 O -0.557 6.557 28 Si 0.778 3.222 29 C -0.090 4.090 30 C -0.165 4.165 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.417 0.583 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.129 0.871 44 H 0.068 0.932 45 H 0.104 0.896 46 H 0.176 0.824 47 H 0.086 0.914 48 H 0.394 0.606 49 H -0.281 1.281 50 H -0.286 1.286 51 H 0.161 0.839 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 -0.967 -2.776 6.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.245 6.245 3 C 0.092 3.908 4 C -0.026 4.026 5 O -0.082 6.082 6 C -0.084 4.084 7 C 0.393 3.607 8 O -0.421 6.421 9 N -0.337 5.337 10 C 0.008 3.992 11 H 0.117 0.883 12 C -0.161 4.161 13 C -0.087 4.087 14 H 0.121 0.879 15 C -0.073 4.073 16 C -0.150 4.150 17 C -0.142 4.142 18 C -0.158 4.158 19 C -0.097 4.097 20 C -0.172 4.172 21 C -0.149 4.149 22 C -0.177 4.177 23 C -0.130 4.130 24 C -0.099 4.099 25 C -0.065 4.065 26 C -0.200 4.200 27 O -0.367 6.367 28 Si 0.681 3.319 29 C -0.107 4.107 30 C -0.184 4.184 31 H 0.135 0.865 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.254 0.746 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.147 0.853 44 H 0.086 0.914 45 H 0.123 0.877 46 H 0.193 0.807 47 H 0.104 0.896 48 H 0.245 0.755 49 H -0.208 1.208 50 H -0.213 1.213 51 H 0.178 0.822 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.663 -0.935 -2.413 6.226 hybrid contribution 0.651 0.220 0.869 1.108 sum -5.012 -0.715 -1.545 5.293 Atomic orbital electron populations 1.23494 0.75318 1.06068 1.03152 1.86143 1.24312 1.25643 1.88434 1.17946 0.86110 0.86815 0.99939 1.19168 0.88241 0.87048 1.08131 1.84007 1.12681 1.34975 1.76528 1.21913 0.83985 0.92727 1.09770 1.16616 0.84988 0.82650 0.76490 1.90887 1.31298 1.68180 1.51747 1.45529 1.10627 1.04823 1.72689 1.22016 0.85716 0.93143 0.98318 0.88273 1.23378 1.04217 0.92453 0.96093 1.21621 0.99869 0.90523 0.96641 0.87854 1.19794 0.93711 0.94939 0.98837 1.21205 0.94398 0.98288 1.01094 1.21402 1.00741 0.93056 0.98955 1.21309 0.93544 0.99598 1.01320 1.20224 0.94556 0.96091 0.98857 1.20834 0.99246 0.94967 1.02167 1.21159 1.00270 0.92511 1.00946 1.23599 1.02095 0.95186 0.96840 1.22851 0.95194 0.94469 1.00499 1.19593 0.92575 0.92768 1.05012 1.18661 0.93096 0.92264 1.02493 1.25152 1.06182 1.00734 0.87931 1.86569 1.77332 1.42525 1.30315 0.93958 0.76614 0.73775 0.87539 1.20835 0.92997 0.98829 0.98071 1.21349 1.01854 0.89480 1.05711 0.86501 0.90990 0.90374 0.74606 0.87482 0.89773 0.84787 0.84737 0.85201 0.90733 0.90967 0.90979 0.85323 0.91359 0.87734 0.80705 0.89589 0.75507 1.20770 1.21343 0.82198 0.80188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -1.11 10.50 -93.20 -0.98 -2.09 16 3 C 0.14 0.63 6.70 22.57 0.15 0.78 16 4 C 0.02 0.19 7.35 23.14 0.17 0.36 16 5 O -0.18 -1.63 10.28 -13.39 -0.14 -1.77 16 6 C -0.03 -0.30 7.07 24.00 0.17 -0.13 16 7 C 0.61 5.21 7.80 86.54 0.67 5.88 16 8 O -0.54 -7.74 16.42 -4.19 -0.07 -7.80 16 9 N -0.69 -1.81 5.26 -443.71 -2.34 -4.14 16 10 C 0.11 0.08 4.32 45.52 0.20 0.28 16 11 H 0.10 0.34 7.46 -2.39 -0.02 0.32 16 12 C -0.12 0.30 7.28 31.12 0.23 0.53 16 13 C -0.07 0.10 3.87 -10.92 -0.04 0.06 16 14 H 0.10 -0.27 8.10 -2.39 -0.02 -0.29 16 15 C -0.07 -0.11 5.29 -19.87 -0.11 -0.21 16 16 C -0.13 -0.18 8.63 22.27 0.19 0.01 16 17 C -0.12 -0.24 10.05 22.27 0.22 -0.01 16 18 C -0.14 -0.36 9.70 22.27 0.22 -0.14 16 19 C -0.10 -0.26 5.88 -19.86 -0.12 -0.38 16 20 C -0.12 0.12 10.01 71.24 0.71 0.84 16 21 C -0.13 -0.31 9.37 22.27 0.21 -0.10 16 22 C -0.14 0.05 7.26 31.21 0.23 0.28 16 23 C -0.11 -0.94 10.68 23.79 0.25 -0.69 16 24 C -0.10 -0.78 6.16 -20.24 -0.12 -0.91 16 25 C -0.06 -0.26 5.30 -19.87 -0.11 -0.37 16 26 C -0.09 -0.07 2.70 71.24 0.19 0.13 16 27 O -0.56 -2.07 12.86 -148.98 -1.92 -3.99 16 28 Si 0.78 -2.60 30.20 68.60 2.07 -0.52 16 29 C -0.09 0.00 8.62 22.02 0.19 0.19 16 30 C -0.17 0.15 9.03 22.40 0.20 0.35 16 31 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 32 H 0.07 -0.61 7.66 -2.39 -0.02 -0.63 16 33 H 0.08 -0.74 7.66 -2.39 -0.02 -0.76 16 34 H 0.42 -0.24 8.42 -92.71 -0.78 -1.02 16 35 H 0.11 -0.34 7.73 -2.39 -0.02 -0.36 16 36 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 37 H 0.13 -0.25 6.65 -2.91 -0.02 -0.27 16 38 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 39 H 0.13 -0.05 8.06 -2.91 -0.02 -0.07 16 40 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.07 -0.16 8.09 -2.39 -0.02 -0.18 16 42 H 0.07 -0.16 8.09 -2.39 -0.02 -0.18 16 43 H 0.13 -0.04 8.06 -2.91 -0.02 -0.07 16 44 H 0.07 0.11 8.14 -2.38 -0.02 0.09 16 45 H 0.10 -0.16 6.32 -2.39 -0.02 -0.18 16 46 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 47 H 0.09 -0.15 7.96 -2.39 -0.02 -0.17 16 48 H 0.39 -1.75 8.74 -74.06 -0.65 -2.40 16 49 H -0.28 -0.36 6.75 99.48 0.67 0.31 16 50 H -0.29 -0.34 7.11 99.48 0.71 0.37 16 51 H 0.16 -0.73 4.85 -2.91 -0.01 -0.75 16 52 H 0.18 -1.48 6.26 -2.91 -0.02 -1.50 16 Total: 0.00 -21.86 431.03 1.02 -20.83 By element: Atomic # 1 Polarization: -7.84 SS G_CDS: -0.44 Total: -8.28 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 4.83 Total: 7.77 kcal Atomic # 7 Polarization: -1.81 SS G_CDS: -2.34 Total: -4.14 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -3.10 Total: -15.66 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: 2.07 Total: -0.52 kcal Total: -21.86 1.02 -20.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650858_6672420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.121 kcal (2) G-P(sol) polarization free energy of solvation -21.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds