Wall clock time and date at job start Tue Mar 9 2021 12:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36773 * 125.79833 * 2 1 4 4 C 1.47266 * 126.94162 * 359.97438 * 3 2 1 5 5 O 1.21626 * 119.99768 * 359.70943 * 4 3 2 6 6 N 1.34775 * 119.99637 * 179.71522 * 4 3 2 7 7 C 1.46506 * 119.99693 * 180.02562 * 6 4 3 8 8 H 1.08996 * 112.84606 * 336.18925 * 7 6 4 9 9 C 1.53775 * 113.61531 * 107.50126 * 7 6 4 10 10 C 1.53775 * 87.08097 * 89.11408 * 9 7 6 11 11 H 1.09000 * 113.61796 * 270.87964 * 10 9 7 12 12 C 1.50706 * 113.61410 * 139.98293 * 10 9 7 13 13 C 1.38223 * 119.99516 * 322.22562 * 12 10 9 14 14 C 1.38254 * 119.99558 * 179.74502 * 13 12 10 15 15 C 1.38218 * 120.00226 * 0.52838 * 14 13 12 16 16 C 1.38259 * 119.99853 * 359.75358 * 15 14 13 17 17 C 1.50694 * 120.00193 * 180.02562 * 16 15 14 18 18 C 1.38210 * 119.99867 * 359.96608 * 16 15 14 19 19 C 1.53777 * 87.08356 * 25.43295 * 10 9 7 20 20 C 1.46689 * 106.11563 * 179.71530 * 3 2 1 21 21 C 1.34486 * 106.32872 * 0.25818 * 20 3 2 22 22 C 1.50705 * 125.56948 * 180.02562 * 21 20 3 23 23 O 1.42893 * 109.47126 * 64.99857 * 22 21 20 24 24 Si 1.86301 * 109.47290 * 185.00340 * 22 21 20 25 25 N 1.34653 * 125.80390 * 180.16160 * 2 1 3 26 26 H 1.08997 * 109.47281 * 90.00596 * 1 2 3 27 27 H 1.09004 * 109.46765 * 209.99871 * 1 2 3 28 28 H 1.08993 * 109.47390 * 330.00161 * 1 2 3 29 29 H 0.97000 * 120.00190 * 359.97438 * 6 4 3 30 30 H 1.09003 * 113.61160 * 203.66277 * 9 7 6 31 31 H 1.09002 * 113.61807 * 334.56510 * 9 7 6 32 32 H 1.07988 * 120.00192 * 0.02562 * 13 12 10 33 33 H 1.08001 * 120.00495 * 180.29766 * 14 13 12 34 34 H 1.07997 * 119.99942 * 179.76405 * 15 14 13 35 35 H 1.08999 * 109.47019 * 269.97014 * 17 16 15 36 36 H 1.09007 * 109.47272 * 29.96895 * 17 16 15 37 37 H 1.08995 * 109.47761 * 149.97229 * 17 16 15 38 38 H 1.08002 * 119.99860 * 180.02562 * 18 16 15 39 39 H 1.09003 * 113.61538 * 220.02028 * 19 10 9 40 40 H 1.08996 * 113.69047 * 89.12574 * 19 10 9 41 41 H 1.07992 * 126.83586 * 180.29868 * 20 3 2 42 42 H 1.09004 * 109.47168 * 305.00255 * 22 21 20 43 43 H 0.96698 * 114.00224 * 179.97438 * 23 22 21 44 44 H 1.48497 * 110.00185 * 178.68189 * 24 22 21 45 45 H 1.48500 * 109.99812 * 300.00232 * 24 22 21 46 46 H 0.96996 * 124.85143 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8701 2.5157 -0.0005 5 8 0.6838 2.7839 -0.0064 6 7 2.7848 3.5055 0.0053 7 6 2.3501 4.9045 0.0054 8 1 1.3489 5.0366 -0.4047 9 6 2.5656 5.6165 1.3513 10 6 3.9645 5.9955 0.8374 11 1 4.7293 5.2529 1.0649 12 6 4.3817 7.3974 1.2006 13 6 3.4518 8.4199 1.1894 14 6 3.8334 9.7050 1.5278 15 6 5.1471 9.9692 1.8667 16 6 6.0785 8.9474 1.8722 17 6 7.5106 9.2353 2.2422 18 6 5.6957 7.6617 1.5396 19 6 3.3898 5.8726 -0.5836 20 6 3.6882 0.6153 0.0070 21 6 3.6096 -0.7273 0.0048 22 6 4.7820 -1.6741 0.0106 23 8 5.5030 -1.5320 1.2361 24 14 4.1668 -3.4254 -0.1486 25 7 2.2948 -1.0921 -0.0031 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 3.7309 3.2915 0.0103 30 1 1.9088 6.4733 1.5020 31 1 2.5828 4.9397 2.2055 32 1 2.4263 8.2143 0.9208 33 1 3.1058 10.5031 1.5237 34 1 5.4459 10.9737 2.1273 35 1 8.0723 9.4960 1.3452 36 1 7.5439 10.0669 2.9462 37 1 7.9517 8.3514 2.7029 38 1 6.4232 6.8635 1.5443 39 1 4.0724 5.4024 -1.2916 40 1 2.9582 6.7987 -0.9632 41 1 4.5889 1.2110 0.0134 42 1 5.4401 -1.4427 -0.8270 43 1 6.2726 -2.1129 1.3093 44 1 5.3151 -4.3666 -0.1761 45 1 3.2684 -3.7533 0.9874 46 1 1.9735 -2.0073 -0.0060 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650858_9865296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:40 Heat of formation + Delta-G solvation = 25.236877 kcal Electronic energy + Delta-G solvation = -26769.629024 eV Core-core repulsion = 23012.888995 eV Total energy + Delta-G solvation = -3756.740029 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.48780 -41.40167 -40.07704 -38.73111 -37.85377 -34.71645 -33.35929 -32.89787 -32.29983 -31.50747 -29.00513 -27.78983 -26.65685 -26.50962 -25.31420 -23.54294 -23.04549 -21.92971 -21.39850 -20.74263 -19.73445 -18.69439 -18.22843 -17.72758 -17.08775 -16.98022 -16.38133 -16.27085 -15.96377 -15.89247 -15.33514 -15.25023 -14.85859 -14.72293 -14.69669 -14.54553 -14.25499 -14.06017 -13.98168 -13.70946 -13.68510 -13.45284 -13.42440 -13.02931 -12.91841 -12.75510 -12.64615 -12.53532 -12.14187 -12.12460 -11.68413 -11.61405 -11.13984 -10.96359 -10.54166 -10.12995 -9.81620 -9.66754 -9.42944 -9.15785 -5.06381 0.43313 0.49507 0.68587 1.10695 1.25043 1.45843 1.79764 2.00122 2.36387 2.50783 2.80386 3.40269 3.50017 3.69978 3.70381 3.75022 3.88186 3.95048 4.02448 4.08143 4.08642 4.20360 4.21662 4.27540 4.44080 4.50200 4.51169 4.56526 4.67212 4.72741 4.75143 4.77918 4.79372 4.80494 4.88225 4.93767 5.02324 5.03111 5.05076 5.16972 5.20356 5.28261 5.31339 5.59732 5.61932 5.68999 5.71985 5.77282 5.86172 6.14846 6.38300 6.57235 6.64884 7.34085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.119 3.881 3 C -0.265 4.265 4 C 0.591 3.409 5 O -0.584 6.584 6 N -0.699 5.699 7 C 0.119 3.881 8 H 0.088 0.912 9 C -0.143 4.143 10 C -0.065 4.065 11 H 0.104 0.896 12 C -0.073 4.073 13 C -0.133 4.133 14 C -0.124 4.124 15 C -0.140 4.140 16 C -0.097 4.097 17 C -0.115 4.115 18 C -0.131 4.131 19 C -0.123 4.123 20 C -0.137 4.137 21 C 0.013 3.987 22 C -0.051 4.051 23 O -0.555 6.555 24 Si 0.750 3.250 25 N -0.537 5.537 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.411 0.589 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.130 0.870 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.159 0.841 42 H 0.112 0.888 43 H 0.399 0.601 44 H -0.275 1.275 45 H -0.292 1.292 46 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.939 -3.240 -3.213 6.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.001 4.001 3 C -0.275 4.275 4 C 0.381 3.619 5 O -0.466 6.466 6 N -0.350 5.350 7 C 0.014 3.986 8 H 0.106 0.894 9 C -0.181 4.181 10 C -0.083 4.083 11 H 0.123 0.877 12 C -0.073 4.073 13 C -0.151 4.151 14 C -0.142 4.142 15 C -0.158 4.158 16 C -0.097 4.097 17 C -0.172 4.172 18 C -0.149 4.149 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.095 4.095 22 C -0.161 4.161 23 O -0.365 6.365 24 Si 0.654 3.346 25 N -0.137 5.137 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.247 0.753 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.148 0.852 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.177 0.823 42 H 0.130 0.870 43 H 0.250 0.750 44 H -0.201 1.201 45 H -0.219 1.219 46 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.648 -3.551 -2.759 5.219 hybrid contribution 1.303 -0.246 0.983 1.651 sum 3.951 -3.798 -1.776 5.761 Atomic orbital electron populations 1.20620 0.85889 1.04437 1.04369 1.20584 0.94377 0.85480 0.99674 1.20167 0.94131 0.91701 1.21512 1.17570 0.84992 0.84842 0.74461 1.90722 1.18034 1.84921 1.52936 1.45345 1.09973 1.04685 1.74953 1.21800 0.99274 0.80290 0.97276 0.89390 1.23548 0.96715 1.00529 0.97330 1.21547 0.96907 0.93157 0.96730 0.87742 1.19846 0.93510 0.95277 0.98652 1.21194 1.00040 0.92742 1.01128 1.21397 0.96543 0.97319 0.98947 1.21302 0.93527 0.99507 1.01486 1.20225 0.97036 0.93611 0.98853 1.20833 0.91431 1.02873 1.02045 1.21164 0.96048 0.96732 1.00921 1.23348 0.97400 0.99437 0.95899 1.21963 0.95497 0.93109 1.05512 1.19472 0.83919 0.94626 1.11467 1.24263 0.93497 1.08357 0.89972 1.86564 1.45964 1.65843 1.38152 0.94606 0.81949 0.71985 0.86105 1.41664 1.05228 1.08830 1.57959 0.89162 0.89416 0.90033 0.75274 0.88501 0.91960 0.85063 0.84797 0.85179 0.90584 0.91046 0.90998 0.85164 0.89594 0.88107 0.82341 0.86994 0.74975 1.20067 1.21929 0.73431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.15 9.88 71.24 0.70 0.56 16 2 C 0.12 0.46 7.17 41.78 0.30 0.76 16 3 C -0.27 -1.68 6.29 -19.04 -0.12 -1.80 16 4 C 0.59 5.36 7.81 86.62 0.68 6.03 16 5 O -0.58 -9.02 14.41 -4.11 -0.06 -9.08 16 6 N -0.70 -2.16 5.26 -443.45 -2.33 -4.49 16 7 C 0.12 0.29 4.32 45.51 0.20 0.49 16 8 H 0.09 0.55 7.46 -2.39 -0.02 0.53 16 9 C -0.14 -0.25 7.25 31.12 0.23 -0.03 16 10 C -0.07 0.03 3.86 -11.02 -0.04 -0.01 16 11 H 0.10 -0.23 8.10 -2.39 -0.02 -0.25 16 12 C -0.07 -0.18 5.29 -19.86 -0.11 -0.28 16 13 C -0.13 -0.34 8.60 22.27 0.19 -0.15 16 14 C -0.12 -0.35 10.05 22.27 0.22 -0.13 16 15 C -0.14 -0.44 9.70 22.27 0.22 -0.23 16 16 C -0.10 -0.30 5.88 -19.87 -0.12 -0.42 16 17 C -0.12 0.10 10.01 71.23 0.71 0.81 16 18 C -0.13 -0.37 9.37 22.27 0.21 -0.16 16 19 C -0.12 0.18 7.29 31.12 0.23 0.41 16 20 C -0.14 -0.35 10.45 23.62 0.25 -0.11 16 21 C 0.01 0.01 6.13 40.98 0.25 0.26 16 22 C -0.05 0.20 2.97 71.24 0.21 0.41 16 23 O -0.55 0.51 12.86 -148.98 -1.92 -1.41 16 24 Si 0.75 -4.34 30.96 68.60 2.12 -2.22 16 25 N -0.54 0.15 5.41 -171.06 -0.93 -0.78 16 26 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 28 H 0.08 0.55 6.47 -2.39 -0.02 0.54 16 29 H 0.41 -0.63 7.82 -92.71 -0.73 -1.35 16 30 H 0.10 0.11 6.32 -2.39 -0.02 0.10 16 31 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.13 -0.01 6.67 -2.92 -0.02 -0.03 16 33 H 0.13 -0.08 8.06 -2.91 -0.02 -0.11 16 34 H 0.13 0.02 8.06 -2.91 -0.02 -0.01 16 35 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.07 -0.13 8.09 -2.38 -0.02 -0.15 16 37 H 0.07 -0.15 8.08 -2.39 -0.02 -0.17 16 38 H 0.13 -0.03 8.06 -2.91 -0.02 -0.06 16 39 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.10 -0.18 7.72 -2.39 -0.02 -0.20 16 41 H 0.16 -0.21 7.69 -2.91 -0.02 -0.23 16 42 H 0.11 -0.95 7.96 -2.39 -0.02 -0.97 16 43 H 0.40 -3.67 8.74 -74.06 -0.65 -4.31 16 44 H -0.28 0.41 7.11 99.48 0.71 1.12 16 45 H -0.29 -0.31 7.11 99.48 0.71 0.39 16 46 H 0.42 -2.32 6.72 -92.71 -0.62 -2.94 16 Total: 0.00 -20.36 378.17 0.16 -20.19 By element: Atomic # 1 Polarization: -7.71 SS G_CDS: -0.94 Total: -8.65 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 4.21 Total: 6.42 kcal Atomic # 7 Polarization: -2.01 SS G_CDS: -3.26 Total: -5.27 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -1.97 Total: -10.49 kcal Atomic # 14 Polarization: -4.34 SS G_CDS: 2.12 Total: -2.22 kcal Total: -20.36 0.16 -20.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650858_9865296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.431 kcal (2) G-P(sol) polarization free energy of solvation -20.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds