Wall clock time and date at job start Tue Mar 9 2021 12:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.38893 * 119.67399 * 244.72438 * 4 2 1 6 6 C 1.36476 * 120.61476 * 179.74213 * 5 4 2 7 7 C 1.40057 * 119.82855 * 0.55489 * 6 5 4 8 8 C 1.41592 * 133.38316 * 179.70624 * 7 6 5 9 9 C 1.35867 * 107.72843 * 179.97438 * 8 7 6 10 10 C 1.47063 * 125.42509 * 179.97438 * 9 8 7 11 11 O 1.21643 * 120.00009 * 0.02880 * 10 9 8 12 12 N 1.34778 * 120.00004 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00326 * 180.02562 * 12 10 9 14 14 H 1.08997 * 112.84664 * 23.80058 * 13 12 10 15 15 C 1.53779 * 113.61482 * 154.99937 * 13 12 10 16 16 C 1.53780 * 87.08263 * 89.11582 * 15 13 12 17 17 H 1.08996 * 113.61465 * 270.88303 * 16 15 13 18 18 C 1.50701 * 113.61535 * 139.97956 * 16 15 13 19 19 C 1.38210 * 119.96849 * 120.00136 * 18 16 15 20 20 C 1.38307 * 120.01339 * 179.97438 * 19 18 16 21 21 Br 1.89100 * 120.02106 * 179.97438 * 20 19 18 22 22 C 1.38523 * 119.95601 * 0.02562 * 20 19 18 23 23 F 1.35096 * 120.02865 * 179.97438 * 22 20 19 24 24 C 1.38454 * 119.93914 * 0.02562 * 22 20 19 25 25 C 1.38193 * 119.98376 * 359.72321 * 24 22 20 26 26 C 1.53776 * 113.61390 * 252.49638 * 13 12 10 27 27 N 1.38148 * 109.14673 * 0.02562 * 9 8 7 28 28 C 1.37482 * 108.78789 * 359.97438 * 27 9 8 29 29 C 1.37709 * 119.67598 * 65.00583 * 4 2 1 30 30 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 31 31 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 32 32 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 33 33 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 34 34 H 1.08006 * 119.69218 * 0.02562 * 5 4 2 35 35 H 1.08001 * 120.08329 * 180.23771 * 6 5 4 36 36 H 1.08001 * 126.13875 * 359.97438 * 8 7 6 37 37 H 0.97002 * 119.99875 * 0.02562 * 12 10 9 38 38 H 1.09003 * 113.61047 * 203.66475 * 15 13 12 39 39 H 1.08996 * 113.61488 * 334.56515 * 15 13 12 40 40 H 1.08003 * 119.99582 * 359.97207 * 19 18 16 41 41 H 1.08001 * 120.00737 * 179.97438 * 24 22 20 42 42 H 1.08009 * 119.97485 * 180.29780 * 25 24 22 43 43 H 1.09007 * 113.61706 * 25.42934 * 26 13 12 44 44 H 1.08998 * 113.61669 * 156.33091 * 26 13 12 45 45 H 0.96996 * 125.59998 * 180.02562 * 27 9 8 46 46 H 1.07999 * 120.09492 * 359.94913 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6462 -0.0036 2.1890 6 6 3.1054 -0.6265 3.3131 7 6 2.8651 -1.9937 3.4994 8 6 3.2031 -2.9097 4.5249 9 6 2.7038 -4.1241 4.1759 10 6 2.8322 -5.3576 4.9663 11 8 3.4252 -5.3406 6.0282 12 7 2.2926 -6.5070 4.5141 13 6 2.4200 -7.7357 5.3017 14 1 2.5814 -7.5436 6.3624 15 6 1.3104 -8.7634 5.0235 16 6 2.2135 -9.3201 3.9103 17 1 2.0623 -8.8391 2.9440 18 6 2.2077 -10.8246 3.8240 19 6 1.7953 -11.4478 2.6613 20 6 1.7901 -12.8285 2.5809 21 35 1.2253 -13.6815 0.9905 22 6 2.1979 -13.5862 3.6665 23 9 2.1928 -14.9350 3.5897 24 6 2.6095 -12.9600 4.8307 25 6 2.6187 -11.5801 4.9065 26 6 3.4043 -8.7531 4.7011 27 7 2.0574 -4.0159 2.9598 28 6 2.1446 -2.7141 2.5264 29 6 1.6818 -2.0552 1.3911 30 1 -0.3934 0.4418 0.7650 31 1 1.7924 -0.5139 -0.8899 32 1 3.5346 1.7702 0.0322 33 1 1.5616 2.4678 -1.2086 34 1 2.8365 1.0498 2.0454 35 1 3.6571 -0.0678 4.0546 36 1 3.7582 -2.6836 5.4233 37 1 1.8200 -6.5206 3.6672 38 1 1.1471 -9.4624 5.8439 39 1 0.3861 -8.3190 4.6546 40 1 1.4771 -10.8566 1.8154 41 1 2.9272 -13.5496 5.6779 42 1 2.9444 -11.0917 5.8131 43 1 4.1705 -8.3003 4.0717 44 1 3.8136 -9.4492 5.4332 45 1 1.6143 -4.7393 2.4895 46 1 1.1281 -2.5968 0.6384 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9650940_13158378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:27 Heat of formation + Delta-G solvation = 11.037566 kcal Electronic energy + Delta-G solvation = -32680.534361 eV Core-core repulsion = 27884.765823 eV Total energy + Delta-G solvation = -4795.768538 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 445.048 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -50.04072 -42.77485 -41.75231 -40.40671 -39.20211 -38.71039 -36.93708 -34.87698 -33.52259 -33.31471 -32.09890 -31.08895 -30.46662 -30.30643 -27.33929 -27.01764 -26.16260 -24.57586 -24.22341 -23.30782 -22.74265 -22.06302 -21.34644 -20.46000 -19.67373 -18.94862 -18.49762 -17.91433 -17.76106 -17.32230 -17.08956 -16.82795 -16.67820 -16.48561 -16.20536 -15.88606 -15.70695 -15.57966 -15.28715 -15.15398 -14.86588 -14.83857 -14.65876 -14.53057 -14.45286 -14.28591 -14.10495 -13.96562 -13.72463 -13.43590 -13.19339 -12.62531 -12.59174 -12.57466 -12.27906 -12.23461 -12.01787 -11.76847 -11.70280 -11.62338 -11.35248 -11.34129 -10.98087 -10.49138 -10.38139 -10.14994 -9.70410 -9.37657 -8.88145 -5.03345 -0.39944 -0.30540 -0.13519 0.40039 0.47252 0.93925 1.26311 1.63533 1.67179 1.79766 1.97905 2.13352 2.17955 2.72857 2.93538 3.12380 3.26657 3.35969 3.39629 3.47707 3.49922 3.59277 3.63139 3.66198 3.76961 3.82855 3.95756 3.96899 4.18599 4.23636 4.30458 4.33417 4.38471 4.41700 4.44247 4.52513 4.59562 4.60720 4.66104 4.67494 4.73997 4.82579 4.84386 4.88004 4.91583 5.11792 5.24823 5.33208 5.35706 5.47810 5.47994 5.55691 5.90982 6.10536 6.25892 6.52844 6.89484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.068 4.068 3 Si 0.690 3.310 4 C -0.087 4.087 5 C -0.145 4.145 6 C -0.050 4.050 7 C -0.117 4.117 8 C -0.097 4.097 9 C 0.011 3.989 10 C 0.589 3.411 11 O -0.513 6.513 12 N -0.713 5.713 13 C 0.120 3.880 14 H 0.112 0.888 15 C -0.135 4.135 16 C -0.074 4.074 17 H 0.100 0.900 18 C -0.077 4.077 19 C -0.059 4.059 20 C -0.129 4.129 21 Br -0.026 7.026 22 C 0.124 3.876 23 F -0.123 7.123 24 C -0.143 4.143 25 C -0.073 4.073 26 C -0.144 4.144 27 N -0.579 5.579 28 C 0.116 3.884 29 C -0.104 4.104 30 H 0.380 0.620 31 H 0.113 0.887 32 H -0.257 1.257 33 H -0.256 1.256 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.159 0.841 37 H 0.397 0.603 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.141 0.859 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.417 0.583 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.632 2.718 1.416 3.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.179 4.179 3 Si 0.592 3.408 4 C -0.089 4.089 5 C -0.163 4.163 6 C -0.069 4.069 7 C -0.122 4.122 8 C -0.124 4.124 9 C -0.098 4.098 10 C 0.376 3.624 11 O -0.388 6.388 12 N -0.364 5.364 13 C 0.015 3.985 14 H 0.130 0.870 15 C -0.173 4.173 16 C -0.092 4.092 17 H 0.119 0.881 18 C -0.078 4.078 19 C -0.079 4.079 20 C -0.210 4.210 21 Br 0.059 6.941 22 C 0.103 3.897 23 F -0.101 7.101 24 C -0.162 4.162 25 C -0.091 4.091 26 C -0.182 4.182 27 N -0.184 5.184 28 C 0.006 3.994 29 C -0.125 4.125 30 H 0.227 0.773 31 H 0.131 0.869 32 H -0.182 1.182 33 H -0.181 1.181 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.177 0.823 37 H 0.231 0.769 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.159 0.841 41 H 0.165 0.835 42 H 0.160 0.840 43 H 0.097 0.903 44 H 0.118 0.882 45 H 0.255 0.745 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.884 2.461 0.603 2.684 hybrid contribution -0.265 -1.312 -0.658 1.492 sum -1.150 1.149 -0.054 1.626 Atomic orbital electron populations 1.86506 1.17031 1.81719 1.49329 1.25081 0.85272 1.10304 0.97256 0.94602 0.81195 0.77892 0.87087 1.20042 0.98647 0.93556 0.96671 1.20472 1.01494 0.99445 0.94898 1.20390 0.97486 0.91976 0.97003 1.18222 1.03721 0.94384 0.95849 1.20990 1.01748 0.89876 0.99782 1.20045 1.05058 0.95887 0.88771 1.17175 0.78752 0.81626 0.84870 1.90888 1.41353 1.84919 1.21609 1.45548 1.57765 1.08424 1.24632 1.21890 0.96636 0.82797 0.97173 0.86992 1.23462 0.97367 0.97654 0.98834 1.21622 0.97965 0.90287 0.99323 0.88133 1.19716 0.99336 0.95475 0.93253 1.20930 0.97213 0.91346 0.98427 1.22006 1.09259 0.95809 0.93906 1.96835 1.88891 1.79564 1.28763 1.17443 1.00584 0.77463 0.94256 1.91582 1.93805 1.28192 1.96545 1.21203 1.02337 0.95632 0.97023 1.21049 0.96715 0.92484 0.98832 1.23604 0.96641 0.98100 0.99900 1.41878 1.48988 1.09005 1.18498 1.18305 1.00644 0.83904 0.96517 1.19866 1.02736 0.93893 0.95989 0.77264 0.86932 1.18154 1.18082 0.85293 0.84937 0.82329 0.76930 0.87886 0.90183 0.84094 0.83516 0.84021 0.90314 0.88226 0.74538 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.27 12.83 -35.23 -0.45 -0.18 16 2 C -0.07 0.06 2.79 36.01 0.10 0.16 16 3 Si 0.69 -1.08 29.76 -169.99 -5.06 -6.14 16 4 C -0.09 0.04 5.36 -104.57 -0.56 -0.52 16 5 C -0.14 0.14 8.59 -39.97 -0.34 -0.20 16 6 C -0.05 0.02 10.06 -39.54 -0.40 -0.38 16 7 C -0.12 -0.11 6.16 -106.93 -0.66 -0.77 16 8 C -0.10 -0.11 10.53 -39.15 -0.41 -0.52 16 9 C 0.01 0.00 6.97 -82.29 -0.57 -0.57 16 10 C 0.59 0.42 7.80 -12.68 -0.10 0.32 16 11 O -0.51 -2.25 16.44 5.24 0.09 -2.17 16 12 N -0.71 1.88 5.26 -54.21 -0.29 1.59 16 13 C 0.12 -0.34 4.32 -67.12 -0.29 -0.63 16 14 H 0.11 -0.14 7.46 -51.93 -0.39 -0.53 16 15 C -0.14 0.59 7.29 -25.92 -0.19 0.40 16 16 C -0.07 0.30 3.86 -90.96 -0.35 -0.05 16 17 H 0.10 -0.51 8.09 -51.93 -0.42 -0.93 16 18 C -0.08 0.19 5.29 -104.62 -0.55 -0.36 16 19 C -0.06 0.07 9.45 -39.57 -0.37 -0.30 16 20 C -0.13 -0.09 6.23 -39.45 -0.25 -0.34 16 21 Br -0.03 -0.04 33.28 -68.01 -2.26 -2.30 16 22 C 0.12 0.13 7.27 -39.40 -0.29 -0.15 16 23 F -0.12 -0.33 16.73 2.25 0.04 -0.29 16 24 C -0.14 0.16 10.03 -39.52 -0.40 -0.23 16 25 C -0.07 0.19 8.62 -39.59 -0.34 -0.15 16 26 C -0.14 0.49 7.25 -25.92 -0.19 0.30 16 27 N -0.58 0.90 6.07 -7.36 -0.04 0.86 16 28 C 0.12 0.03 7.25 -83.98 -0.61 -0.58 16 29 C -0.10 0.02 9.69 -39.42 -0.38 -0.36 16 30 H 0.38 -1.61 8.70 45.56 0.40 -1.21 16 31 H 0.11 -0.07 7.96 -51.93 -0.41 -0.48 16 32 H -0.26 -0.22 7.11 56.52 0.40 0.18 16 33 H -0.26 -0.46 7.11 56.52 0.40 -0.06 16 34 H 0.13 -0.38 4.85 -52.48 -0.25 -0.64 16 35 H 0.13 -0.31 8.06 -52.49 -0.42 -0.74 16 36 H 0.16 0.07 8.06 -52.49 -0.42 -0.35 16 37 H 0.40 -2.07 7.76 -40.82 -0.32 -2.39 16 38 H 0.10 -0.48 7.73 -51.93 -0.40 -0.88 16 39 H 0.08 -0.37 8.14 -51.93 -0.42 -0.80 16 40 H 0.14 -0.39 8.05 -52.48 -0.42 -0.81 16 41 H 0.15 -0.41 8.06 -52.49 -0.42 -0.83 16 42 H 0.14 -0.67 6.64 -52.48 -0.35 -1.02 16 43 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 44 H 0.10 -0.39 6.30 -51.93 -0.33 -0.72 16 45 H 0.42 -1.94 8.12 -40.82 -0.33 -2.27 16 46 H 0.13 -0.14 8.06 -52.49 -0.42 -0.56 16 LS Contribution 409.55 15.07 6.17 6.17 Total: 0.00 -9.10 409.55 -13.92 -23.02 By element: Atomic # 1 Polarization: -10.68 SS G_CDS: -4.96 Total: -15.64 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -7.15 Total: -4.93 kcal Atomic # 7 Polarization: 2.78 SS G_CDS: -0.33 Total: 2.45 kcal Atomic # 8 Polarization: -1.98 SS G_CDS: -0.37 Total: -2.35 kcal Atomic # 9 Polarization: -0.33 SS G_CDS: 0.04 Total: -0.29 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: -5.06 Total: -6.14 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.26 Total: -2.30 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -9.10 -13.92 -23.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650940_13158378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.057 kcal (2) G-P(sol) polarization free energy of solvation -9.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds