Wall clock time and date at job start Tue Mar 9 2021 12:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86295 * 109.47056 * 2 1 4 4 C 1.50697 * 109.47443 * 120.00447 * 2 1 3 5 5 C 1.38558 * 120.32228 * 245.02531 * 4 2 1 6 6 N 1.31528 * 120.89897 * 179.71667 * 5 4 2 7 7 C 1.32712 * 121.64252 * 0.52456 * 6 5 4 8 8 C 1.48170 * 119.72105 * 179.75207 * 7 6 5 9 9 O 1.21513 * 120.00404 * 179.72873 * 8 7 6 10 10 N 1.34782 * 120.00170 * 359.72163 * 8 7 6 11 11 C 1.46496 * 120.00349 * 179.97438 * 10 8 7 12 12 H 1.09003 * 112.84646 * 23.80899 * 11 10 8 13 13 C 1.53784 * 113.61554 * 155.00078 * 11 10 8 14 14 C 1.53781 * 87.07665 * 89.20301 * 13 11 10 15 15 H 1.08994 * 113.61489 * 270.79500 * 14 13 11 16 16 C 1.50704 * 113.61170 * 139.97966 * 14 13 11 17 17 C 1.38221 * 119.97359 * 301.50943 * 16 14 13 18 18 C 1.38231 * 120.04453 * 179.97438 * 17 16 14 19 19 C 1.38412 * 119.98316 * 0.04638 * 18 17 16 20 20 F 1.35102 * 120.02809 * 180.02562 * 19 18 17 21 21 C 1.38567 * 119.94182 * 359.94833 * 19 18 17 22 22 Br 1.89096 * 120.01933 * 180.30265 * 21 19 18 23 23 C 1.38255 * 119.95473 * 0.02914 * 21 19 18 24 24 C 1.53778 * 87.17393 * 25.39160 * 14 13 11 25 25 C 1.39307 * 120.55529 * 359.47369 * 7 6 5 26 26 C 1.38586 * 119.05948 * 0.25678 * 25 7 6 27 27 H 0.96701 * 114.00364 * 59.99958 * 1 2 3 28 28 H 1.09008 * 109.46774 * 240.00366 * 2 1 3 29 29 H 1.48496 * 110.00552 * 298.68267 * 3 2 1 30 30 H 1.48507 * 109.99971 * 60.00485 * 3 2 1 31 31 H 1.07999 * 119.54994 * 359.97279 * 5 4 2 32 32 H 0.97002 * 119.99471 * 0.02562 * 10 8 7 33 33 H 1.08993 * 113.61413 * 334.65644 * 13 11 10 34 34 H 1.08997 * 113.68711 * 203.76129 * 13 11 10 35 35 H 1.07999 * 119.97665 * 0.02562 * 17 16 14 36 36 H 1.07999 * 120.00893 * 179.97438 * 18 17 16 37 37 H 1.08004 * 119.98581 * 179.97438 * 23 21 19 38 38 H 1.09006 * 113.61399 * 89.15700 * 24 14 13 39 39 H 1.08998 * 113.61353 * 220.05802 * 24 14 13 40 40 H 1.08003 * 120.46670 * 180.22923 * 25 7 6 41 41 H 1.08001 * 120.75730 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.6407 -0.0172 2.1979 6 7 3.0796 -0.6247 3.2787 7 6 2.8725 -1.9197 3.4822 8 6 3.3908 -2.5621 4.7126 9 8 3.1998 -3.7463 4.9065 10 7 4.0743 -1.8329 5.6169 11 6 4.5863 -2.4679 6.8338 12 1 4.7282 -3.5429 6.7227 13 6 5.8007 -1.7459 7.4412 14 6 4.7975 -0.9002 8.2432 15 1 4.4745 0.0024 7.7247 16 6 5.2292 -0.6368 9.6629 17 6 5.4754 -1.6949 10.5174 18 6 5.8720 -1.4549 11.8197 19 6 6.0217 -0.1543 12.2687 20 9 6.4098 0.0813 13.5411 21 6 5.7749 0.9060 11.4114 22 35 5.9870 2.6838 12.0199 23 6 5.3788 0.6632 10.1092 24 6 3.8143 -2.0747 8.1063 25 6 2.1668 -2.6788 2.5514 26 6 1.6878 -2.0639 1.4055 27 1 -0.3934 0.4417 -0.7650 28 1 1.7922 -0.5138 -0.8901 29 1 1.5878 2.4586 -1.2241 30 1 1.5615 2.4678 1.2086 31 1 2.8321 1.0373 2.0646 32 1 4.2266 -0.8875 5.4623 33 1 6.3746 -1.1703 6.7151 34 1 6.4259 -2.3873 8.0623 35 1 5.3586 -2.7098 10.1672 36 1 6.0638 -2.2821 12.4871 37 1 5.1858 1.4892 9.4408 38 1 3.8945 -2.8072 8.9096 39 1 2.7869 -1.7641 7.9164 40 1 1.9959 -3.7318 2.7202 41 1 1.1370 -2.6262 0.6660 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650940_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:43 Heat of formation + Delta-G solvation = -6.488778 kcal Electronic energy + Delta-G solvation = -28066.277941 eV Core-core repulsion = 23681.739303 eV Total energy + Delta-G solvation = -4384.538638 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.032 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.07841 -41.99447 -41.29955 -40.14217 -38.75726 -37.93468 -34.86698 -33.79778 -33.35132 -33.00522 -31.78833 -30.25766 -28.00720 -26.67924 -26.07944 -25.01022 -24.17034 -23.83855 -22.63171 -21.96091 -20.18480 -19.36115 -18.84099 -18.64294 -18.14402 -17.66305 -17.19794 -16.89129 -16.85311 -16.56934 -16.32161 -16.18310 -15.56878 -15.50531 -15.42963 -14.89280 -14.74513 -14.65757 -14.32940 -14.25839 -14.16612 -14.03142 -13.94294 -13.73479 -13.42874 -13.26430 -12.53637 -12.37631 -12.12330 -12.11237 -12.02915 -11.58626 -11.50851 -11.41351 -11.22076 -11.05984 -10.80154 -10.52609 -10.32887 -10.06175 -10.02400 -9.59487 -4.92631 -0.59323 -0.18935 0.01734 0.08572 0.43557 1.24363 1.52609 1.60670 1.92827 1.95526 2.30345 2.63077 2.92979 3.03062 3.28264 3.43166 3.49204 3.63085 3.66295 3.69581 3.72191 3.80325 3.90719 3.93755 4.04505 4.10186 4.16102 4.19128 4.39194 4.51599 4.58718 4.62332 4.78181 4.78994 4.82098 4.86031 4.90712 4.94856 5.00691 5.04176 5.08438 5.15936 5.35640 5.38763 5.59017 5.64965 6.27453 6.54424 6.61417 7.04940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.082 4.082 3 Si 0.761 3.239 4 C -0.104 4.104 5 C 0.099 3.901 6 N -0.458 5.458 7 C 0.062 3.938 8 C 0.574 3.426 9 O -0.564 6.564 10 N -0.683 5.683 11 C 0.110 3.890 12 H 0.097 0.903 13 C -0.123 4.123 14 C -0.067 4.067 15 H 0.111 0.889 16 C -0.069 4.069 17 C -0.068 4.068 18 C -0.143 4.143 19 C 0.096 3.904 20 F -0.140 7.140 21 C -0.143 4.143 22 Br -0.043 7.043 23 C -0.063 4.063 24 C -0.141 4.141 25 C -0.116 4.116 26 C -0.054 4.054 27 H 0.400 0.600 28 H 0.109 0.891 29 H -0.283 1.283 30 H -0.291 1.291 31 H 0.183 0.817 32 H 0.420 0.580 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.154 0.846 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.151 0.849 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 0.231 -6.991 7.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.191 4.191 3 Si 0.666 3.334 4 C -0.106 4.106 5 C -0.061 4.061 6 N -0.169 5.169 7 C -0.076 4.076 8 C 0.359 3.641 9 O -0.442 6.442 10 N -0.333 5.333 11 C 0.005 3.995 12 H 0.115 0.885 13 C -0.160 4.160 14 C -0.085 4.085 15 H 0.129 0.871 16 C -0.070 4.070 17 C -0.086 4.086 18 C -0.162 4.162 19 C 0.074 3.926 20 F -0.118 7.118 21 C -0.223 4.223 22 Br 0.043 6.957 23 C -0.083 4.083 24 C -0.179 4.179 25 C -0.137 4.137 26 C -0.080 4.080 27 H 0.251 0.749 28 H 0.127 0.873 29 H -0.210 1.210 30 H -0.218 1.218 31 H 0.199 0.801 32 H 0.258 0.742 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.184 0.816 36 H 0.179 0.821 37 H 0.171 0.829 38 H 0.127 0.873 39 H 0.085 0.915 40 H 0.169 0.831 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.938 1.044 -5.341 5.777 hybrid contribution -1.679 -0.290 -0.785 1.876 sum 0.259 0.754 -6.126 6.178 Atomic orbital electron populations 1.86534 1.17974 1.80826 1.51432 1.24916 0.84493 1.12005 0.97733 0.94181 0.90111 0.71949 0.77180 1.20777 0.97955 0.94974 0.96909 1.22961 0.94265 1.00689 0.88167 1.67509 1.18708 1.09046 1.21612 1.21115 0.99724 0.90824 0.95901 1.18013 0.77919 0.85575 0.82585 1.90789 1.59219 1.16293 1.77892 1.45474 1.54117 1.14007 1.19751 1.22035 0.95682 0.98518 0.83315 0.88539 1.23415 0.95448 0.98299 0.98884 1.21621 0.97220 0.98994 0.90649 0.87106 1.19912 0.98747 0.91851 0.96515 1.21350 0.94799 1.01062 0.91354 1.21433 1.02036 0.94355 0.98401 1.17770 1.01257 0.94219 0.79320 1.91530 1.88434 1.95351 1.36514 1.22105 1.11513 0.90756 0.97927 1.96791 1.96645 1.12789 1.89504 1.21145 0.96198 0.98606 0.92333 1.23629 0.98610 0.97918 0.97783 1.22295 0.95512 1.02417 0.93436 1.21759 0.95379 0.94156 0.96715 0.74886 0.87308 1.20957 1.21848 0.80101 0.74226 0.89392 0.86918 0.81559 0.82084 0.82869 0.87277 0.91549 0.83078 0.81990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.38 12.82 -148.98 -1.91 -0.53 16 2 C -0.08 0.47 2.81 71.23 0.20 0.67 16 3 Si 0.76 -5.01 29.87 68.60 2.05 -2.96 16 4 C -0.10 0.18 5.40 -19.70 -0.11 0.07 16 5 C 0.10 -0.11 9.84 84.81 0.83 0.72 16 6 N -0.46 -0.78 9.54 -184.91 -1.76 -2.55 16 7 C 0.06 0.24 6.75 41.91 0.28 0.52 16 8 C 0.57 3.12 7.81 86.88 0.68 3.80 16 9 O -0.56 -6.59 15.92 -3.76 -0.06 -6.65 16 10 N -0.68 0.43 5.25 -442.32 -2.32 -1.90 16 11 C 0.11 -0.36 4.33 45.58 0.20 -0.16 16 12 H 0.10 -0.01 7.46 -2.39 -0.02 -0.03 16 13 C -0.12 0.95 7.29 31.12 0.23 1.18 16 14 C -0.07 0.46 3.85 -11.01 -0.04 0.42 16 15 H 0.11 -0.89 8.08 -2.39 -0.02 -0.91 16 16 C -0.07 0.30 5.29 -19.86 -0.11 0.19 16 17 C -0.07 0.35 8.53 22.26 0.19 0.54 16 18 C -0.14 0.25 10.03 22.31 0.22 0.47 16 19 C 0.10 0.36 7.27 22.39 0.16 0.52 16 20 F -0.14 -1.06 16.73 44.97 0.75 -0.31 16 21 C -0.14 -0.45 6.23 22.35 0.14 -0.31 16 22 Br -0.04 -0.21 33.28 -20.37 -0.68 -0.89 16 23 C -0.06 0.08 9.45 22.28 0.21 0.29 16 24 C -0.14 0.71 7.27 31.18 0.23 0.94 16 25 C -0.12 -0.27 9.63 22.61 0.22 -0.05 16 26 C -0.05 0.05 9.83 22.45 0.22 0.27 16 27 H 0.40 -4.10 8.74 -74.06 -0.65 -4.75 16 28 H 0.11 -1.13 7.96 -2.38 -0.02 -1.15 16 29 H -0.28 0.55 7.11 99.48 0.71 1.26 16 30 H -0.29 -0.11 7.05 99.48 0.70 0.59 16 31 H 0.18 -1.05 4.88 -2.91 -0.01 -1.06 16 32 H 0.42 -1.53 8.03 -92.71 -0.74 -2.28 16 33 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 34 H 0.11 -1.08 7.64 -2.39 -0.02 -1.10 16 35 H 0.17 -1.74 6.72 -2.91 -0.02 -1.76 16 36 H 0.16 -0.87 8.06 -2.91 -0.02 -0.89 16 37 H 0.15 -0.64 8.05 -2.91 -0.02 -0.67 16 38 H 0.11 -0.80 6.39 -2.38 -0.02 -0.82 16 39 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.15 0.29 7.64 -2.91 -0.02 0.27 16 41 H 0.16 -0.77 8.06 -2.91 -0.02 -0.79 16 Total: 0.00 -20.25 373.20 -0.42 -20.67 By element: Atomic # 1 Polarization: -14.75 SS G_CDS: -0.24 Total: -14.98 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 3.76 Total: 10.09 kcal Atomic # 7 Polarization: -0.36 SS G_CDS: -4.09 Total: -4.44 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -1.97 Total: -7.18 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.75 Total: -0.31 kcal Atomic # 14 Polarization: -5.01 SS G_CDS: 2.05 Total: -2.96 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -0.68 Total: -0.89 kcal Total: -20.25 -0.42 -20.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650940_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.178 kcal (2) G-P(sol) polarization free energy of solvation -20.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds