Wall clock time and date at job start Tue Mar 9 2021 12:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36413 * 125.79984 * 2 1 4 4 C 1.47376 * 127.19368 * 0.02562 * 3 2 1 5 5 O 1.21610 * 119.99951 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99842 * 179.97438 * 4 3 2 7 7 C 1.46506 * 119.99981 * 180.02562 * 6 4 3 8 8 H 1.08998 * 112.85063 * 23.80349 * 7 6 4 9 9 C 1.53781 * 113.61613 * 154.99882 * 7 6 4 10 10 C 1.53786 * 87.17350 * 89.15811 * 9 7 6 11 11 H 1.09000 * 113.60973 * 270.92699 * 10 9 7 12 12 C 1.50690 * 113.61518 * 140.02616 * 10 9 7 13 13 C 1.38224 * 119.96827 * 299.72166 * 12 10 9 14 14 C 1.38299 * 120.01540 * 179.72727 * 13 12 10 15 15 Br 1.89093 * 120.02332 * 180.27604 * 14 13 12 16 16 C 1.38527 * 119.95247 * 0.54775 * 14 13 12 17 17 F 1.35103 * 120.02799 * 179.70269 * 16 14 13 18 18 C 1.38448 * 119.94265 * 359.73057 * 16 14 13 19 19 C 1.38187 * 119.98832 * 359.97438 * 18 16 14 20 20 C 1.53781 * 113.68810 * 252.53321 * 7 6 4 21 21 C 1.47025 * 105.61511 * 180.26495 * 3 2 1 22 22 C 1.34187 * 105.95282 * 359.57088 * 21 3 2 23 23 C 1.50697 * 125.43813 * 180.14432 * 22 21 3 24 24 O 1.42900 * 109.47033 * 300.36281 * 23 22 21 25 25 Si 1.86300 * 109.46909 * 180.36258 * 23 22 21 26 26 O 1.33657 * 125.79988 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.47792 * 89.99666 * 1 2 3 28 28 H 1.09006 * 109.47092 * 209.99879 * 1 2 3 29 29 H 1.09001 * 109.47164 * 329.99816 * 1 2 3 30 30 H 0.97003 * 120.00744 * 359.97438 * 6 4 3 31 31 H 1.09002 * 113.61445 * 203.74810 * 9 7 6 32 32 H 1.09002 * 113.61408 * 334.56541 * 9 7 6 33 33 H 1.07997 * 119.98829 * 0.02562 * 13 12 10 34 34 H 1.08009 * 120.00755 * 180.02562 * 18 16 14 35 35 H 1.07999 * 119.98253 * 180.02562 * 19 18 16 36 36 H 1.09005 * 113.61471 * 25.42227 * 20 7 6 37 37 H 1.09003 * 113.61469 * 156.32005 * 20 7 6 38 38 H 1.07998 * 127.02647 * 179.73744 * 21 3 2 39 39 H 1.09002 * 109.46990 * 60.36715 * 23 22 21 40 40 H 0.96696 * 114.00336 * 299.99738 * 24 23 22 41 41 H 1.48504 * 109.99775 * 58.68671 * 25 23 22 42 42 H 1.48499 * 109.99729 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.1064 0.0000 4 6 1.8739 2.5157 0.0005 5 8 0.6889 2.7891 0.0006 6 7 2.7930 3.5015 0.0010 7 6 2.3645 4.9025 0.0021 8 1 1.3620 5.0382 0.4078 9 6 3.4056 5.8646 0.5980 10 6 3.9885 5.9906 -0.8196 11 1 4.7511 5.2454 -1.0458 12 6 4.4140 7.3918 -1.1750 13 6 3.4858 8.4161 -1.1756 14 6 3.8763 9.7035 -1.4961 15 35 2.6083 11.1062 -1.4894 16 6 5.1960 9.9636 -1.8276 17 9 5.5779 11.2196 -2.1468 18 6 6.1230 8.9353 -1.8320 19 6 5.7314 7.6509 -1.5054 20 6 2.5877 5.6178 -1.3408 21 6 3.6849 0.5991 -0.0065 22 6 3.5859 -0.7391 -0.0001 23 6 4.7459 -1.7011 -0.0002 24 8 5.5428 -1.4862 -1.1668 25 14 4.1026 -3.4495 -0.0010 26 8 2.2888 -1.0840 -0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 3.7382 3.2835 0.0013 31 1 2.9764 6.7919 0.9775 32 1 4.0829 5.3899 1.3080 33 1 2.4563 8.2117 -0.9210 34 1 7.1522 9.1370 -2.0899 35 1 6.4547 6.8489 -1.5085 36 1 2.6054 4.9436 -2.1971 37 1 1.9347 6.4776 -1.4913 38 1 4.5928 1.1840 -0.0123 39 1 5.3533 -1.5378 0.8900 40 1 5.0658 -1.6143 -1.9981 41 1 3.2468 -3.6753 -1.1935 42 1 5.2369 -4.4079 -0.0017 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650940_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:02 Heat of formation + Delta-G solvation = -32.741521 kcal Electronic energy + Delta-G solvation = -29176.494657 eV Core-core repulsion = 24665.787474 eV Total energy + Delta-G solvation = -4510.707182 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.036 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.08856 -43.75226 -41.56923 -40.26662 -38.73096 -38.13679 -34.78929 -33.97720 -33.53407 -33.05757 -31.56359 -30.41801 -29.37963 -26.70338 -26.61409 -25.61618 -24.43918 -23.90032 -22.75164 -22.17850 -20.83989 -20.08396 -19.03368 -18.85551 -18.07640 -17.70590 -17.69703 -17.13952 -16.86356 -16.83913 -16.51202 -16.03494 -15.94844 -15.71262 -15.48297 -15.20867 -14.72870 -14.65835 -14.36541 -14.23145 -14.18634 -14.07580 -13.92410 -13.83750 -13.79151 -13.45008 -13.27172 -12.91714 -12.81350 -12.38963 -12.17798 -12.12102 -12.03429 -11.57710 -11.42475 -11.26458 -11.16987 -10.93631 -10.72668 -10.12858 -10.02180 -9.61335 -9.55547 -4.93160 -0.18839 -0.00528 0.23978 0.42704 0.84084 1.19504 1.43440 1.70992 1.92549 2.11935 2.23993 2.30155 3.02003 3.18412 3.39267 3.39838 3.56766 3.61701 3.66960 3.75375 3.79506 3.91945 4.03392 4.07047 4.13422 4.23461 4.41067 4.42907 4.49724 4.59747 4.62881 4.67651 4.74972 4.77584 4.82306 4.84467 4.88495 4.95094 5.03040 5.03152 5.13755 5.19236 5.24012 5.38160 5.59528 5.65604 5.90652 6.35152 6.49865 7.17635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.085 3.915 3 C -0.268 4.268 4 C 0.591 3.409 5 O -0.574 6.574 6 N -0.693 5.693 7 C 0.116 3.884 8 H 0.088 0.912 9 C -0.126 4.126 10 C -0.061 4.061 11 H 0.124 0.876 12 C -0.071 4.071 13 C -0.065 4.065 14 C -0.143 4.143 15 Br -0.043 7.043 16 C 0.095 3.905 17 F -0.140 7.140 18 C -0.145 4.145 19 C -0.064 4.064 20 C -0.145 4.145 21 C -0.144 4.144 22 C -0.059 4.059 23 C -0.029 4.029 24 O -0.532 6.532 25 Si 0.766 3.234 26 O -0.173 6.173 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.414 0.586 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.151 0.849 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.181 0.819 39 H 0.159 0.841 40 H 0.390 0.610 41 H -0.297 1.297 42 H -0.283 1.283 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 -4.933 2.559 6.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.031 3.969 3 C -0.272 4.272 4 C 0.381 3.619 5 O -0.455 6.455 6 N -0.344 5.344 7 C 0.010 3.990 8 H 0.106 0.894 9 C -0.163 4.163 10 C -0.080 4.080 11 H 0.142 0.858 12 C -0.072 4.072 13 C -0.084 4.084 14 C -0.223 4.223 15 Br 0.042 6.958 16 C 0.074 3.926 17 F -0.119 7.119 18 C -0.164 4.164 19 C -0.082 4.082 20 C -0.184 4.184 21 C -0.163 4.163 22 C -0.107 4.107 23 C -0.139 4.139 24 O -0.341 6.341 25 Si 0.670 3.330 26 O -0.070 6.070 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.252 0.748 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.169 0.831 34 H 0.179 0.821 35 H 0.188 0.812 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.198 0.802 39 H 0.176 0.824 40 H 0.240 0.760 41 H -0.224 1.224 42 H -0.210 1.210 Dipole moment (debyes) X Y Z Total from point charges 2.459 -5.077 2.574 6.201 hybrid contribution 0.769 0.881 -1.430 1.847 sum 3.228 -4.196 1.144 5.416 Atomic orbital electron populations 1.20706 0.82777 1.05705 1.05002 1.23213 0.94731 0.83086 0.95872 1.21194 0.94284 0.93378 1.18383 1.17350 0.85200 0.84395 0.74984 1.90765 1.18055 1.84494 1.52171 1.45318 1.09971 1.04732 1.74355 1.21847 0.99599 0.79926 0.97600 0.89358 1.23398 0.97362 0.99547 0.96040 1.21682 0.97385 0.92250 0.96644 0.85756 1.19932 0.93121 0.95384 0.98811 1.21056 1.01478 0.89074 0.96837 1.22081 0.92723 0.95792 1.11701 1.96797 1.54780 1.46386 1.97826 1.17784 0.92552 0.80543 1.01708 1.91531 1.91572 1.38546 1.90206 1.21465 1.00424 0.92071 1.02470 1.21452 0.96107 0.96300 0.94342 1.23633 0.96541 1.00724 0.97482 1.22799 0.96358 0.93532 1.03640 1.22841 0.82782 0.96027 1.09061 1.24434 0.90107 1.06693 0.92665 1.86638 1.39345 1.91655 1.16423 0.93556 0.78811 0.72523 0.88088 1.83682 1.16880 1.35036 1.71444 0.88708 0.88132 0.88374 0.74844 0.88126 0.88909 0.83135 0.82103 0.81174 0.91168 0.88623 0.80210 0.82369 0.75999 1.22357 1.21001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.06 9.89 71.23 0.70 0.76 16 2 C 0.08 0.17 7.37 25.26 0.19 0.36 16 3 C -0.27 -0.49 6.31 -18.99 -0.12 -0.61 16 4 C 0.59 2.19 7.81 86.65 0.68 2.87 16 5 O -0.57 -6.04 14.44 -4.06 -0.06 -6.10 16 6 N -0.69 2.20 5.26 -443.34 -2.33 -0.13 16 7 C 0.12 -0.41 4.32 45.52 0.20 -0.22 16 8 H 0.09 0.09 7.46 -2.39 -0.02 0.07 16 9 C -0.13 1.01 7.28 31.12 0.23 1.24 16 10 C -0.06 0.52 3.87 -10.92 -0.04 0.48 16 11 H 0.12 -1.52 8.09 -2.39 -0.02 -1.54 16 12 C -0.07 0.37 5.29 -19.86 -0.11 0.27 16 13 C -0.06 0.11 8.37 22.28 0.19 0.29 16 14 C -0.14 -0.41 6.23 22.35 0.14 -0.27 16 15 Br -0.04 -0.21 33.28 -20.37 -0.68 -0.89 16 16 C 0.10 0.33 7.27 22.39 0.16 0.49 16 17 F -0.14 -1.03 16.73 44.97 0.75 -0.27 16 18 C -0.15 0.34 10.03 22.31 0.22 0.56 16 19 C -0.06 0.40 9.71 22.26 0.22 0.62 16 20 C -0.15 0.71 7.26 31.21 0.23 0.94 16 21 C -0.14 0.37 10.46 23.65 0.25 0.62 16 22 C -0.06 0.12 6.20 24.76 0.15 0.27 16 23 C -0.03 0.14 2.98 71.24 0.21 0.36 16 24 O -0.53 1.57 12.86 -148.98 -1.92 -0.34 16 25 Si 0.77 -2.67 32.08 68.60 2.20 -0.47 16 26 O -0.17 -0.13 8.89 4.40 0.04 -0.09 16 27 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.10 -0.47 8.14 -2.38 -0.02 -0.49 16 29 H 0.10 0.24 6.48 -2.39 -0.02 0.22 16 30 H 0.41 -3.60 7.88 -92.71 -0.73 -4.33 16 31 H 0.10 -0.76 7.73 -2.39 -0.02 -0.78 16 32 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H 0.15 -0.57 6.64 -2.91 -0.02 -0.59 16 34 H 0.16 -0.97 8.06 -2.91 -0.02 -0.99 16 35 H 0.17 -2.12 8.05 -2.91 -0.02 -2.15 16 36 H 0.07 -0.20 8.14 -2.38 -0.02 -0.22 16 37 H 0.10 -0.44 6.31 -2.39 -0.02 -0.46 16 38 H 0.18 -1.44 7.74 -2.91 -0.02 -1.46 16 39 H 0.16 -1.43 7.96 -2.39 -0.02 -1.45 16 40 H 0.39 -2.91 8.70 -74.06 -0.64 -3.56 16 41 H -0.30 -0.96 7.11 99.48 0.71 -0.25 16 42 H -0.28 -0.66 7.11 99.48 0.71 0.05 16 Total: 0.00 -19.57 382.10 1.27 -18.30 By element: Atomic # 1 Polarization: -18.78 SS G_CDS: -0.23 Total: -19.02 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 3.49 Total: 9.02 kcal Atomic # 7 Polarization: 2.20 SS G_CDS: -2.33 Total: -0.13 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -1.94 Total: -6.54 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.75 Total: -0.27 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.20 Total: -0.47 kcal Atomic # 35 Polarization: -0.21 SS G_CDS: -0.68 Total: -0.89 kcal Total: -19.57 1.27 -18.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650940_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.440 kcal (2) G-P(sol) polarization free energy of solvation -19.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds