Wall clock time and date at job start Tue Mar 9 2021 12:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86294 * 109.47431 * 2 1 4 4 C 1.50709 * 109.47207 * 240.00046 * 2 1 3 5 5 C 1.32688 * 124.68237 * 300.00492 * 4 2 1 6 6 C 1.44514 * 113.09738 * 180.02562 * 5 4 2 7 7 C 1.47046 * 123.49070 * 179.97438 * 6 5 4 8 8 O 1.21655 * 119.99484 * 179.97438 * 7 6 5 9 9 N 1.34777 * 120.00102 * 0.02562 * 7 6 5 10 10 C 1.46496 * 119.99614 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.85438 * 25.32943 * 10 9 7 12 12 C 1.53786 * 113.61437 * 156.52632 * 10 9 7 13 13 C 1.53778 * 87.08205 * 89.11378 * 12 10 9 14 14 H 1.08998 * 113.61348 * 270.88873 * 13 12 10 15 15 C 1.50696 * 113.61558 * 140.06654 * 13 12 10 16 16 C 1.38228 * 119.96843 * 120.00116 * 15 13 12 17 17 C 1.38238 * 120.03824 * 180.02562 * 16 15 13 18 18 C 1.38404 * 119.98752 * 359.97438 * 17 16 15 19 19 F 1.35105 * 120.02925 * 179.97438 * 18 17 16 20 20 C 1.38566 * 119.94143 * 0.02562 * 18 17 16 21 21 Br 1.89100 * 120.02229 * 179.97438 * 20 18 17 22 22 C 1.38254 * 119.97100 * 299.72822 * 15 13 12 23 23 C 1.53785 * 113.61192 * 254.13187 * 10 9 7 24 24 C 1.36221 * 113.01354 * 0.22869 * 6 5 4 25 25 Cl 1.73596 * 124.60376 * 179.75446 * 24 6 5 26 26 S 1.70451 * 110.79125 * 359.64702 * 24 6 5 27 27 H 0.96697 * 113.99939 * 299.99451 * 1 2 3 28 28 H 1.09004 * 109.47598 * 120.00375 * 2 1 3 29 29 H 1.48500 * 110.00257 * 300.00229 * 3 2 1 30 30 H 1.48505 * 109.99935 * 61.32124 * 3 2 1 31 31 H 1.08000 * 123.45768 * 0.03753 * 5 4 2 32 32 H 0.96996 * 119.99887 * 359.97438 * 9 7 6 33 33 H 1.08995 * 113.61461 * 203.66170 * 12 10 9 34 34 H 1.09001 * 113.61158 * 334.56712 * 12 10 9 35 35 H 1.07992 * 119.97865 * 0.02562 * 16 15 13 36 36 H 1.07996 * 120.00430 * 179.97438 * 17 16 15 37 37 H 1.08001 * 119.99453 * 359.97438 * 22 15 13 38 38 H 1.08993 * 113.61272 * 25.43158 * 23 10 9 39 39 H 1.08998 * 113.61245 * 156.33579 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6686 -1.9756 -1.5321 6 6 2.2778 -2.4013 -2.7715 7 6 2.1359 -3.7576 -3.3215 8 8 2.6767 -4.0475 -4.3720 9 7 1.4058 -4.6791 -2.6625 10 6 1.2649 -6.0304 -3.2103 11 1 2.0923 -6.3115 -3.8619 12 6 0.9270 -7.0926 -2.1507 13 6 -0.5536 -6.7730 -2.4161 14 1 -0.9458 -5.9705 -1.7914 15 6 -1.4410 -7.9909 -2.4298 16 6 -2.4826 -8.0965 -1.5273 17 6 -3.2972 -9.2133 -1.5382 18 6 -3.0701 -10.2262 -2.4537 19 9 -3.8654 -11.3183 -2.4648 20 6 -2.0257 -10.1196 -3.3581 21 35 -1.7130 -11.5025 -4.6094 22 6 -1.2160 -8.9990 -3.3488 23 6 -0.1200 -6.3070 -3.8190 24 6 3.0018 -1.4175 -3.3745 25 17 3.8626 -1.6029 -4.8705 26 16 2.9451 0.0212 -2.4621 27 1 -0.3933 0.4416 0.7651 28 1 1.7924 -0.5139 0.8900 29 1 1.5615 2.4679 -1.2084 30 1 1.5880 2.4585 1.2243 31 1 1.0615 -2.6211 -0.9148 32 1 0.9743 -4.4477 -1.8251 33 1 1.2140 -8.1037 -2.4391 34 1 1.2576 -6.8278 -1.1463 35 1 -2.6601 -7.3060 -0.8132 36 1 -4.1106 -9.2954 -0.8326 37 1 -0.4048 -8.9132 -4.0566 38 1 -0.6341 -5.4087 -4.1605 39 1 -0.1188 -7.1039 -4.5627 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650940_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:25 Heat of formation + Delta-G solvation = -13.202732 kcal Electronic energy + Delta-G solvation = -28930.806667 eV Core-core repulsion = 24340.755256 eV Total energy + Delta-G solvation = -4590.051412 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 445.954 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.07957 -41.68768 -40.60603 -39.13809 -38.53098 -37.92456 -37.06325 -34.55678 -33.53693 -31.89081 -31.46926 -30.40678 -27.08766 -26.69527 -26.61830 -25.27680 -23.99661 -22.59364 -22.11818 -20.77503 -20.21919 -19.30946 -18.86528 -18.52277 -17.86096 -17.65272 -17.28919 -16.85514 -16.58663 -16.41120 -16.15315 -15.93478 -15.53736 -15.37494 -14.96201 -14.65369 -14.57429 -14.47126 -14.38787 -14.23079 -14.05708 -13.99108 -13.87072 -13.42940 -13.24401 -13.03998 -12.56644 -12.45807 -12.36153 -12.10931 -12.08423 -12.03029 -11.99447 -11.56644 -11.41563 -11.24330 -10.94707 -10.58254 -10.16473 -10.01962 -9.82151 -9.64361 -9.59035 -5.05176 -0.60981 -0.18547 -0.17594 0.00599 0.43539 0.49618 0.74648 1.05286 1.20700 1.53970 1.90516 2.12309 2.18113 2.31107 3.03024 3.21300 3.40621 3.56091 3.58754 3.63146 3.70178 3.88292 3.91301 3.96910 4.05093 4.08510 4.24956 4.37929 4.44708 4.48770 4.66238 4.76970 4.79666 4.83819 4.85163 4.87856 4.96885 5.00645 5.04533 5.05025 5.17668 5.38794 5.60220 5.66906 6.47615 6.58694 7.16807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.028 4.028 3 Si 0.693 3.307 4 C -0.190 4.190 5 C -0.068 4.068 6 C -0.165 4.165 7 C 0.574 3.426 8 O -0.559 6.559 9 N -0.690 5.690 10 C 0.116 3.884 11 H 0.085 0.915 12 C -0.123 4.123 13 C -0.060 4.060 14 H 0.127 0.873 15 C -0.071 4.071 16 C -0.063 4.063 17 C -0.145 4.145 18 C 0.095 3.905 19 F -0.140 7.140 20 C -0.143 4.143 21 Br -0.045 7.045 22 C -0.066 4.066 23 C -0.147 4.147 24 C -0.141 4.141 25 Cl 0.003 6.997 26 S 0.257 5.743 27 H 0.402 0.598 28 H 0.126 0.874 29 H -0.279 1.279 30 H -0.250 1.250 31 H 0.185 0.815 32 H 0.416 0.584 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.173 0.827 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.069 0.931 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 5.234 10.210 11.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.141 4.141 3 Si 0.595 3.405 4 C -0.307 4.307 5 C -0.096 4.096 6 C -0.185 4.185 7 C 0.360 3.640 8 O -0.438 6.438 9 N -0.342 5.342 10 C 0.011 3.989 11 H 0.104 0.896 12 C -0.161 4.161 13 C -0.079 4.079 14 H 0.145 0.855 15 C -0.072 4.072 16 C -0.081 4.081 17 C -0.164 4.164 18 C 0.074 3.926 19 F -0.119 7.119 20 C -0.223 4.223 21 Br 0.041 6.959 22 C -0.085 4.085 23 C -0.186 4.186 24 C -0.287 4.287 25 Cl 0.032 6.968 26 S 0.523 5.477 27 H 0.254 0.746 28 H 0.143 0.857 29 H -0.206 1.206 30 H -0.174 1.174 31 H 0.202 0.798 32 H 0.254 0.746 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.190 0.810 36 H 0.179 0.821 37 H 0.167 0.833 38 H 0.087 0.913 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.276 6.409 8.130 10.431 hybrid contribution -2.026 -1.605 0.419 2.618 sum -0.750 4.804 8.549 9.835 Atomic orbital electron populations 1.86544 1.17349 1.80411 1.51646 1.24030 0.84571 1.09424 0.96028 0.94682 0.90859 0.74688 0.80265 1.23795 1.06901 0.98137 1.01861 1.21141 0.99079 0.95568 0.93860 1.20324 1.04874 0.94863 0.98420 1.17639 0.78437 0.84191 0.83746 1.90865 1.48493 1.80675 1.23745 1.45335 1.51785 1.10619 1.26478 1.21846 0.98141 0.81749 0.97195 0.89637 1.23385 0.93793 0.98931 1.00015 1.21699 0.93518 0.94575 0.98068 0.85476 1.19941 0.96689 0.95670 0.94936 1.21462 0.91991 0.97046 0.97588 1.21472 1.02780 0.93142 0.99019 1.17788 0.90804 0.85796 0.98244 1.91530 1.72213 1.52321 1.95823 1.22081 1.01689 0.98345 1.00216 1.96797 1.95847 1.47515 1.55767 1.21055 0.98054 0.90601 0.98804 1.23637 0.96113 1.02002 0.96826 1.25784 1.03919 1.02386 0.96657 1.98424 1.73518 1.97223 1.27643 1.83297 1.46115 1.07132 1.11167 0.74593 0.85665 1.20578 1.17384 0.79811 0.74603 0.88221 0.88478 0.80998 0.82062 0.83281 0.91263 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.45 12.82 -148.98 -1.91 1.54 16 2 C -0.03 0.23 2.94 71.24 0.21 0.44 16 3 Si 0.69 -4.45 30.90 68.60 2.12 -2.33 16 4 C -0.19 0.75 5.71 24.52 0.14 0.89 16 5 C -0.07 0.28 9.71 22.70 0.22 0.50 16 6 C -0.17 -0.36 5.98 -19.84 -0.12 -0.48 16 7 C 0.57 2.64 7.79 86.55 0.67 3.31 16 8 O -0.56 -7.19 14.53 -4.21 -0.06 -7.25 16 9 N -0.69 2.35 5.24 -443.64 -2.33 0.03 16 10 C 0.12 -0.39 4.29 45.52 0.20 -0.20 16 11 H 0.09 0.15 7.50 -2.39 -0.02 0.14 16 12 C -0.12 1.04 7.29 31.12 0.23 1.27 16 13 C -0.06 0.53 3.87 -10.92 -0.04 0.49 16 14 H 0.13 -1.65 8.09 -2.39 -0.02 -1.67 16 15 C -0.07 0.38 5.29 -19.86 -0.11 0.28 16 16 C -0.06 0.42 9.71 22.27 0.22 0.63 16 17 C -0.14 0.37 10.03 22.31 0.22 0.60 16 18 C 0.09 0.33 7.27 22.39 0.16 0.49 16 19 F -0.14 -1.04 16.73 44.97 0.75 -0.28 16 20 C -0.14 -0.44 6.23 22.35 0.14 -0.30 16 21 Br -0.04 -0.23 33.29 -20.37 -0.68 -0.91 16 22 C -0.07 0.09 8.37 22.28 0.19 0.28 16 23 C -0.15 0.64 7.27 31.22 0.23 0.86 16 24 C -0.14 -0.60 6.87 67.35 0.46 -0.14 16 25 Cl 0.00 0.02 27.20 -2.72 -0.07 -0.05 16 26 S 0.26 -0.29 20.17 -56.49 -1.14 -1.43 16 27 H 0.40 -5.67 8.74 -74.06 -0.65 -6.32 16 28 H 0.13 -1.76 7.96 -2.39 -0.02 -1.78 16 29 H -0.28 -0.40 7.11 99.48 0.71 0.31 16 30 H -0.25 0.91 7.11 99.48 0.71 1.61 16 31 H 0.18 -1.97 7.10 -2.91 -0.02 -1.99 16 32 H 0.42 -4.19 7.25 -92.71 -0.67 -4.86 16 33 H 0.10 -0.76 7.73 -2.39 -0.02 -0.78 16 34 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 35 H 0.17 -2.26 8.05 -2.91 -0.02 -2.29 16 36 H 0.16 -1.02 8.06 -2.91 -0.02 -1.04 16 37 H 0.15 -0.49 6.65 -2.91 -0.02 -0.51 16 38 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.09 -0.35 6.31 -2.39 -0.02 -0.36 16 Total: 0.00 -22.16 383.43 -0.42 -22.58 By element: Atomic # 1 Polarization: -20.67 SS G_CDS: -0.12 Total: -20.79 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 3.02 Total: 8.91 kcal Atomic # 7 Polarization: 2.35 SS G_CDS: -2.33 Total: 0.03 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -1.97 Total: -5.71 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.75 Total: -0.28 kcal Atomic # 14 Polarization: -4.45 SS G_CDS: 2.12 Total: -2.33 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -1.14 Total: -1.43 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.07 Total: -0.05 kcal Atomic # 35 Polarization: -0.23 SS G_CDS: -0.68 Total: -0.91 kcal Total: -22.16 -0.42 -22.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650940_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.373 kcal (2) G-P(sol) polarization free energy of solvation -22.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds