Wall clock time and date at job start Tue Mar 9 2021 12:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86299 * 109.47004 * 2 1 4 4 C 1.50706 * 109.47147 * 240.00515 * 2 1 3 5 5 C 1.38244 * 119.97491 * 119.72203 * 4 2 1 6 6 C 1.38283 * 120.11200 * 179.76679 * 5 4 2 7 7 C 1.38130 * 120.05429 * 0.50914 * 6 5 4 8 8 C 1.38751 * 119.94324 * 359.74770 * 7 6 5 9 9 O 1.35900 * 120.05239 * 179.97438 * 8 7 6 10 10 C 1.42897 * 117.00288 * 0.02562 * 9 8 7 11 11 C 1.52997 * 109.47089 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47094 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47449 * 180.02562 * 12 11 10 14 14 O 1.21284 * 119.99857 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00341 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00179 * 179.97438 * 15 13 12 17 17 H 1.09010 * 112.84639 * 23.80989 * 16 15 13 18 18 C 1.53776 * 113.61544 * 155.00002 * 16 15 13 19 19 C 1.53777 * 87.08382 * 89.11981 * 18 16 15 20 20 H 1.09004 * 113.61202 * 270.89143 * 19 18 16 21 21 C 1.50697 * 113.62038 * 139.98338 * 19 18 16 22 22 C 1.38204 * 119.97478 * 120.00150 * 21 19 18 23 23 C 1.38294 * 120.01927 * 179.97438 * 22 21 19 24 24 Br 1.89103 * 120.02481 * 180.02562 * 23 22 21 25 25 C 1.38524 * 119.95473 * 359.97438 * 23 22 21 26 26 F 1.35099 * 120.03219 * 180.02562 * 25 23 22 27 27 C 1.38452 * 119.94296 * 0.02562 * 25 23 22 28 28 C 1.38200 * 119.97934 * 359.74331 * 27 25 23 29 29 C 1.53777 * 113.61877 * 252.50134 * 16 15 13 30 30 C 1.38166 * 119.96660 * 299.99525 * 4 2 1 31 31 H 0.96700 * 114.00205 * 299.99223 * 1 2 3 32 32 H 1.09001 * 109.47626 * 120.00659 * 2 1 3 33 33 H 1.48494 * 110.00213 * 300.00024 * 3 2 1 34 34 H 1.48501 * 109.99913 * 61.32272 * 3 2 1 35 35 H 1.08001 * 119.94451 * 359.97438 * 5 4 2 36 36 H 1.07998 * 119.97599 * 180.23111 * 6 5 4 37 37 H 1.07996 * 120.02813 * 179.72007 * 7 6 5 38 38 H 1.08996 * 109.46899 * 300.00586 * 10 9 8 39 39 H 1.08997 * 109.47080 * 60.00416 * 10 9 8 40 40 H 1.08996 * 109.47624 * 300.00015 * 11 10 9 41 41 H 1.09002 * 109.47345 * 59.99999 * 11 10 9 42 42 H 1.09007 * 109.47154 * 300.00089 * 12 11 10 43 43 H 1.08997 * 109.47166 * 60.00233 * 12 11 10 44 44 H 0.96998 * 119.99891 * 359.97438 * 15 13 12 45 45 H 1.09002 * 113.61682 * 203.67263 * 18 16 15 46 46 H 1.08999 * 113.61557 * 334.57221 * 18 16 15 47 47 H 1.08006 * 119.99150 * 0.02562 * 22 21 19 48 48 H 1.07992 * 120.01356 * 179.97438 * 27 25 23 49 49 H 1.08001 * 119.97503 * 180.26069 * 28 27 25 50 50 H 1.08997 * 113.61109 * 25.42928 * 29 16 15 51 51 H 1.08994 * 113.61539 * 156.33840 * 29 16 15 52 52 H 1.07999 * 120.03143 * 359.96296 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7213 -0.0362 -2.1431 6 6 3.1878 -0.6866 -3.2707 7 6 2.8566 -2.0090 -3.4934 8 6 2.0594 -2.6863 -2.5817 9 8 1.7318 -3.9872 -2.7988 10 6 2.2433 -4.5956 -3.9863 11 6 1.7718 -6.0493 -4.0582 12 6 2.3200 -6.7010 -5.3293 13 6 1.8552 -8.1327 -5.4006 14 8 1.1548 -8.5874 -4.5210 15 7 2.2178 -8.9080 -6.4417 16 6 1.7663 -10.3000 -6.5106 17 1 0.8558 -10.4785 -5.9384 18 6 1.7143 -10.8606 -7.9416 19 6 3.1777 -11.2893 -7.7428 20 1 3.8995 -10.5240 -8.0283 21 6 3.4952 -12.6419 -8.3263 22 6 4.4607 -12.7611 -9.3079 23 6 4.7532 -14.0021 -9.8436 24 35 6.0748 -14.1654 -11.1863 25 6 4.0782 -15.1255 -9.3953 26 9 4.3630 -16.3387 -9.9172 27 6 3.1112 -15.0042 -8.4118 28 6 2.8243 -13.7635 -7.8748 29 6 2.8804 -11.3234 -6.2343 30 6 1.5972 -2.0331 -1.4486 31 1 -0.3933 0.4416 0.7651 32 1 1.7924 -0.5139 0.8899 33 1 1.5614 2.4679 -1.2084 34 1 1.5878 2.4585 1.2243 35 1 2.9774 0.9992 -1.9732 36 1 3.8079 -0.1590 -3.9802 37 1 3.2174 -2.5152 -4.3765 38 1 1.8795 -4.0524 -4.8585 39 1 3.3327 -4.5670 -3.9689 40 1 2.1352 -6.5928 -3.1861 41 1 0.6823 -6.0776 -4.0758 42 1 1.9570 -6.1576 -6.2018 43 1 3.4095 -6.6728 -5.3113 44 1 2.7776 -8.5443 -7.1454 45 1 1.0260 -11.6977 -8.0579 46 1 1.5837 -10.0947 -8.7061 47 1 4.9876 -11.8850 -9.6562 48 1 2.5840 -15.8792 -8.0618 49 1 2.0730 -13.6695 -7.1047 50 1 3.6912 -10.9310 -5.6205 51 1 2.5109 -12.2871 -5.8839 52 1 0.9768 -2.5582 -0.7374 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9650940_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:04 Heat of formation + Delta-G solvation = -67.574027 kcal Electronic energy + Delta-G solvation = -34635.048944 eV Core-core repulsion = 29527.992313 eV Total energy + Delta-G solvation = -5107.056631 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 464.083 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.09216 -41.63419 -41.23019 -40.43073 -39.15750 -38.77233 -37.47380 -34.88804 -34.54524 -33.40299 -32.57244 -31.88454 -31.19811 -30.26915 -28.40447 -26.85617 -26.67370 -25.98525 -24.15180 -23.73230 -23.56834 -22.56266 -21.77138 -21.43334 -20.12443 -18.96880 -18.87107 -18.58654 -18.23771 -17.65127 -17.44184 -17.29709 -17.14475 -16.87317 -16.86620 -16.64776 -16.29544 -15.82665 -15.67402 -15.54626 -15.36845 -14.84323 -14.71782 -14.64784 -14.52398 -14.31166 -14.20360 -14.16452 -13.93485 -13.79176 -13.55380 -13.40500 -13.30244 -13.20649 -13.13974 -12.65747 -12.38709 -12.37559 -12.20713 -12.10252 -12.01634 -11.95113 -11.64938 -11.58180 -11.55914 -11.45699 -11.21212 -10.94057 -10.57381 -10.06053 -10.02943 -9.87436 -9.60338 -9.22711 -4.91634 -0.20195 0.00646 0.22846 0.42489 0.42957 1.28681 1.61904 1.62687 1.92140 1.98237 2.29139 2.39437 2.65902 3.02098 3.37015 3.44524 3.49375 3.63973 3.69329 3.72100 3.77641 3.87073 3.90516 3.95012 4.00920 4.03070 4.10383 4.13873 4.15594 4.19786 4.28375 4.36847 4.37557 4.44598 4.51298 4.53486 4.64065 4.68196 4.71235 4.77926 4.79777 4.84886 4.88021 4.97221 5.00098 5.03288 5.03801 5.08653 5.17238 5.19810 5.29645 5.39120 5.39863 5.48522 5.63338 5.65899 5.75401 6.44761 6.56187 6.56653 7.28668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.096 4.096 3 Si 0.778 3.222 4 C -0.048 4.048 5 C -0.163 4.163 6 C -0.072 4.072 7 C -0.206 4.206 8 C 0.117 3.883 9 O -0.339 6.339 10 C 0.057 3.943 11 C -0.102 4.102 12 C -0.128 4.128 13 C 0.511 3.489 14 O -0.589 6.589 15 N -0.701 5.701 16 C 0.112 3.888 17 H 0.082 0.918 18 C -0.125 4.125 19 C -0.063 4.063 20 H 0.120 0.880 21 C -0.070 4.070 22 C -0.061 4.061 23 C -0.143 4.143 24 Br -0.042 7.042 25 C 0.095 3.905 26 F -0.140 7.140 27 C -0.145 4.145 28 C -0.070 4.070 29 C -0.143 4.143 30 C -0.154 4.154 31 H 0.395 0.605 32 H 0.092 0.908 33 H -0.295 1.295 34 H -0.286 1.286 35 H 0.146 0.854 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.419 0.581 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.158 0.842 48 H 0.159 0.841 49 H 0.163 0.837 50 H 0.070 0.930 51 H 0.099 0.901 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 4.576 -2.365 6.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.203 4.203 3 Si 0.683 3.317 4 C -0.049 4.049 5 C -0.180 4.180 6 C -0.090 4.090 7 C -0.224 4.224 8 C 0.071 3.929 9 O -0.253 6.253 10 C -0.018 4.018 11 C -0.140 4.140 12 C -0.167 4.167 13 C 0.299 3.701 14 O -0.469 6.469 15 N -0.353 5.353 16 C 0.006 3.994 17 H 0.100 0.900 18 C -0.163 4.163 19 C -0.081 4.081 20 H 0.138 0.862 21 C -0.071 4.071 22 C -0.081 4.081 23 C -0.223 4.223 24 Br 0.044 6.956 25 C 0.074 3.926 26 F -0.119 7.119 27 C -0.164 4.164 28 C -0.088 4.088 29 C -0.182 4.182 30 C -0.173 4.173 31 H 0.245 0.755 32 H 0.109 0.891 33 H -0.223 1.223 34 H -0.213 1.213 35 H 0.163 0.837 36 H 0.179 0.821 37 H 0.174 0.826 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.257 0.743 45 H 0.120 0.880 46 H 0.109 0.891 47 H 0.176 0.824 48 H 0.176 0.824 49 H 0.180 0.820 50 H 0.089 0.911 51 H 0.117 0.883 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.490 4.505 -2.719 6.917 hybrid contribution -1.309 -0.798 0.422 1.590 sum 3.181 3.707 -2.297 5.398 Atomic orbital electron populations 1.86552 1.18644 1.80864 1.50970 1.25214 0.84078 1.12691 0.98345 0.93987 0.90154 0.71115 0.76483 1.19286 0.96984 0.92801 0.95783 1.21147 1.00947 1.00626 0.95319 1.21300 0.97460 0.93602 0.96620 1.21610 1.02731 0.96810 1.01262 1.19171 0.95197 0.83639 0.94856 1.86048 1.71728 1.22777 1.44795 1.23016 0.99820 0.93181 0.85745 1.21156 1.01494 0.92918 0.98459 1.21539 1.04717 0.90629 0.99810 1.21163 0.78926 0.89101 0.80864 1.90743 1.39737 1.76166 1.40218 1.45583 1.53345 1.11264 1.25117 1.21832 0.97903 0.81184 0.98518 0.89990 1.23399 0.95617 1.01741 0.95552 1.21633 0.98192 0.92985 0.95270 0.86168 1.19946 0.95273 0.96230 0.95659 1.21159 0.96750 0.95165 0.94985 1.22125 1.01530 0.96460 1.02180 1.96798 1.50749 1.98660 1.49404 1.17775 0.98380 0.79596 0.96886 1.91530 1.92637 1.42177 1.85531 1.21418 0.97645 1.00999 0.96361 1.21348 0.98664 0.90303 0.98515 1.23586 0.98891 1.00151 0.95550 1.20327 1.03912 0.95016 0.98002 0.75484 0.89057 1.22271 1.21335 0.83702 0.82095 0.82589 0.90018 0.89555 0.92100 0.92367 0.85432 0.85243 0.74324 0.87981 0.89112 0.82431 0.82367 0.81994 0.91095 0.88274 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.80 12.74 -148.98 -1.90 -4.70 16 2 C -0.10 -0.17 2.81 71.24 0.20 0.03 16 3 Si 0.78 -1.22 29.79 68.60 2.04 0.82 16 4 C -0.05 -0.23 5.42 -19.88 -0.11 -0.34 16 5 C -0.16 -0.16 8.67 22.28 0.19 0.03 16 6 C -0.07 0.10 10.04 22.25 0.22 0.33 16 7 C -0.21 -0.01 9.04 22.37 0.20 0.19 16 8 C 0.12 0.68 6.69 22.51 0.15 0.83 16 9 O -0.34 -2.15 10.14 -92.42 -0.94 -3.09 16 10 C 0.06 -0.16 4.74 71.98 0.34 0.18 16 11 C -0.10 0.09 4.87 30.59 0.15 0.24 16 12 C -0.13 1.06 5.70 29.85 0.17 1.23 16 13 C 0.51 -0.59 7.83 87.66 0.69 0.09 16 14 O -0.59 -5.99 15.58 -3.04 -0.05 -6.04 16 15 N -0.70 5.16 5.26 -440.04 -2.32 2.85 16 16 C 0.11 -0.63 4.32 45.52 0.20 -0.44 16 17 H 0.08 0.00 7.46 -2.38 -0.02 -0.02 16 18 C -0.13 1.23 7.29 31.12 0.23 1.45 16 19 C -0.06 0.62 3.85 -11.01 -0.04 0.58 16 20 H 0.12 -1.56 8.09 -2.38 -0.02 -1.58 16 21 C -0.07 0.42 5.29 -19.87 -0.11 0.32 16 22 C -0.06 0.20 9.45 22.28 0.21 0.41 16 23 C -0.14 -0.26 6.23 22.35 0.14 -0.12 16 24 Br -0.04 -0.15 33.28 -20.37 -0.68 -0.82 16 25 C 0.09 0.29 7.27 22.39 0.16 0.45 16 26 F -0.14 -0.99 16.73 44.97 0.75 -0.24 16 27 C -0.14 0.29 10.03 22.31 0.22 0.52 16 28 C -0.07 0.40 8.62 22.27 0.19 0.59 16 29 C -0.14 1.03 7.25 31.12 0.23 1.25 16 30 C -0.15 -1.24 9.55 22.37 0.21 -1.02 16 31 H 0.39 -1.38 8.74 -74.06 -0.65 -2.03 16 32 H 0.09 -0.14 7.96 -2.39 -0.02 -0.16 16 33 H -0.30 -1.52 7.11 99.48 0.71 -0.81 16 34 H -0.29 -0.68 7.11 99.48 0.71 0.02 16 35 H 0.15 -0.49 4.87 -2.91 -0.01 -0.50 16 36 H 0.16 -1.27 8.06 -2.91 -0.02 -1.29 16 37 H 0.16 -0.96 6.30 -2.91 -0.02 -0.98 16 38 H 0.08 -0.52 7.66 -2.39 -0.02 -0.54 16 39 H 0.09 -0.62 7.66 -2.39 -0.02 -0.64 16 40 H 0.06 0.22 8.10 -2.39 -0.02 0.20 16 41 H 0.06 0.24 8.10 -2.39 -0.02 0.22 16 42 H 0.13 -1.74 8.14 -2.38 -0.02 -1.76 16 43 H 0.13 -1.81 8.14 -2.39 -0.02 -1.83 16 44 H 0.42 -5.99 8.70 -92.71 -0.81 -6.80 16 45 H 0.10 -1.00 7.73 -2.39 -0.02 -1.02 16 46 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 47 H 0.16 -1.12 8.06 -2.91 -0.02 -1.14 16 48 H 0.16 -0.83 8.06 -2.91 -0.02 -0.85 16 49 H 0.16 -1.65 6.64 -2.91 -0.02 -1.67 16 50 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 51 H 0.10 -0.76 6.29 -2.39 -0.02 -0.78 16 52 H 0.12 1.14 8.06 -2.91 -0.02 1.11 16 Total: 0.00 -29.04 451.82 0.34 -28.70 By element: Atomic # 1 Polarization: -23.86 SS G_CDS: -0.43 Total: -24.29 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 3.85 Total: 6.81 kcal Atomic # 7 Polarization: 5.16 SS G_CDS: -2.32 Total: 2.85 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -2.88 Total: -13.83 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.75 Total: -0.24 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: 2.04 Total: 0.82 kcal Atomic # 35 Polarization: -0.15 SS G_CDS: -0.68 Total: -0.82 kcal Total: -29.04 0.34 -28.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9650940_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.873 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds