Wall clock time and date at job start Tue Mar 9 2021 12:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86296 * 109.47142 * 2 1 4 4 C 1.86300 * 109.46871 * 240.00324 * 2 1 3 5 5 C 1.86294 * 109.47293 * 120.00171 * 2 1 3 6 6 C 1.53004 * 109.47076 * 59.99744 * 5 2 1 7 7 C 1.53003 * 109.47014 * 179.97438 * 6 5 2 8 8 N 1.46500 * 109.47219 * 180.02562 * 7 6 5 9 9 C 1.34770 * 120.00358 * 180.02562 * 8 7 6 10 10 O 1.21698 * 119.99757 * 0.02562 * 9 8 7 11 11 C 1.46674 * 120.00189 * 179.97438 * 9 8 7 12 12 C 1.37877 * 126.23355 * 180.32956 * 11 9 8 13 13 C 1.39832 * 107.08316 * 180.12297 * 12 11 9 14 14 C 1.50706 * 126.06630 * 179.83729 * 13 12 11 15 15 O 1.42895 * 109.47147 * 299.72132 * 14 13 12 16 16 Si 1.86295 * 109.47097 * 179.71632 * 14 13 12 17 17 H 1.48503 * 109.47244 * 60.00313 * 16 14 13 18 18 H 1.48506 * 109.46829 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47274 * 300.00196 * 16 14 13 20 20 C 1.35451 * 107.86759 * 359.57814 * 13 12 11 21 21 N 1.35529 * 108.86914 * 0.26431 * 20 13 12 22 22 H 1.09004 * 109.46940 * 299.99695 * 1 2 3 23 23 H 1.09003 * 109.46960 * 59.99743 * 1 2 3 24 24 H 1.09003 * 109.46978 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47225 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47403 * 299.99986 * 3 2 1 27 27 H 1.09004 * 109.47413 * 60.00042 * 3 2 1 28 28 H 1.09003 * 109.47185 * 299.99709 * 4 2 1 29 29 H 1.08994 * 109.47529 * 59.99907 * 4 2 1 30 30 H 1.09004 * 109.46843 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.47238 * 299.99952 * 5 2 1 32 32 H 1.09004 * 109.47238 * 180.02562 * 5 2 1 33 33 H 1.09004 * 109.46661 * 60.00497 * 6 5 2 34 34 H 1.08994 * 109.47250 * 300.00053 * 6 5 2 35 35 H 1.09004 * 109.47126 * 60.00314 * 7 6 5 36 36 H 1.08994 * 109.47297 * 300.00198 * 7 6 5 37 37 H 0.96999 * 119.99718 * 0.02562 * 8 7 6 38 38 H 1.08001 * 126.45845 * 359.96253 * 12 11 9 39 39 H 1.09001 * 109.46953 * 59.71647 * 14 13 12 40 40 H 0.96700 * 113.99916 * 179.97438 * 15 14 13 41 41 H 1.07997 * 125.56478 * 180.27747 * 20 13 12 42 42 H 0.97005 * 125.67547 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4840 -0.8782 1.5210 6 6 1.9740 -2.3208 1.5210 7 6 2.4846 -3.0422 2.7699 8 7 1.9967 -4.4236 2.7697 9 6 2.3224 -5.2535 3.7803 10 8 3.0214 -4.8553 4.6935 11 6 1.8335 -6.6364 3.7803 12 6 2.0810 -7.5883 4.7466 13 6 1.4289 -8.7588 4.3466 14 6 1.4214 -10.0690 5.0913 15 8 2.7605 -10.5500 5.2227 16 14 0.4043 -11.3131 4.1488 17 1 0.9927 -11.5138 2.8002 18 1 0.3963 -12.6040 4.8830 19 1 -0.9874 -10.8133 4.0123 20 6 0.8005 -8.5045 3.1739 21 7 1.0385 -7.2183 2.8190 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.5740 1.7564 -0.0005 26 1 2.1207 2.2703 -0.8900 27 1 2.1207 2.2703 0.8900 28 1 2.1206 -1.9059 -1.5212 29 1 2.1206 -0.3644 -2.4111 30 1 3.5740 -0.8778 -1.5214 31 1 2.1207 -0.3644 2.4111 32 1 3.5741 -0.8778 1.5213 33 1 2.3374 -2.8346 0.6310 34 1 0.8840 -2.3208 1.5211 35 1 2.1216 -2.5285 3.6602 36 1 3.5745 -3.0422 2.7695 37 1 1.4393 -4.7409 2.0420 38 1 2.6699 -7.4557 5.6421 39 1 0.9895 -9.9218 6.0812 40 1 2.8317 -11.3916 5.6935 41 1 0.2065 -9.2112 2.6134 42 1 0.7045 -6.7808 2.0203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_10543058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:45 Heat of formation + Delta-G solvation = -81.899847 kcal Electronic energy + Delta-G solvation = -19705.030262 eV Core-core repulsion = 16615.643654 eV Total energy + Delta-G solvation = -3089.386607 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.39928 -40.10727 -37.59095 -36.77686 -33.77450 -32.53069 -30.71874 -29.60841 -28.50485 -28.49591 -27.40013 -26.06511 -23.65335 -22.62506 -21.09216 -20.49579 -19.65953 -18.33469 -17.07135 -16.95630 -16.84405 -16.00551 -15.71598 -15.13747 -14.94257 -14.70616 -14.59049 -14.31913 -14.26863 -14.22841 -14.08315 -13.99031 -13.49359 -13.46294 -13.31406 -13.19591 -13.17400 -13.16429 -12.67884 -12.47278 -12.13330 -11.92757 -11.86536 -11.13954 -10.88938 -10.87402 -10.60072 -10.30118 -10.15882 -9.81500 -9.22507 0.47920 1.18743 1.41840 1.48175 1.63177 1.69031 1.79042 1.80814 1.92480 2.00953 2.15681 2.46211 2.56241 3.56710 3.80085 3.94302 3.94558 4.04037 4.11686 4.18716 4.35138 4.59348 4.59896 4.64096 4.66808 4.67842 4.68215 4.70411 4.70622 4.71120 4.90160 4.98463 5.07074 5.13392 5.25073 5.35917 5.43344 5.47159 5.48669 5.66006 5.86242 6.25673 6.48079 6.72664 7.19969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.013 2.987 3 C -0.453 4.453 4 C -0.451 4.451 5 C -0.412 4.412 6 C -0.121 4.121 7 C 0.119 3.881 8 N -0.735 5.735 9 C 0.589 3.411 10 O -0.524 6.524 11 C -0.059 4.059 12 C -0.071 4.071 13 C -0.166 4.166 14 C -0.046 4.046 15 O -0.546 6.546 16 Si 0.943 3.057 17 H -0.249 1.249 18 H -0.255 1.255 19 H -0.251 1.251 20 C 0.028 3.972 21 N -0.535 5.535 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.393 0.607 38 H 0.152 0.848 39 H 0.073 0.927 40 H 0.378 0.622 41 H 0.171 0.829 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.921 -0.535 -3.842 5.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.209 2.791 3 C -0.560 4.560 4 C -0.559 4.559 5 C -0.497 4.497 6 C -0.159 4.159 7 C -0.004 4.004 8 N -0.387 5.387 9 C 0.377 3.623 10 O -0.400 6.400 11 C -0.171 4.171 12 C -0.098 4.098 13 C -0.173 4.173 14 C -0.158 4.158 15 O -0.351 6.351 16 Si 0.765 3.235 17 H -0.172 1.172 18 H -0.179 1.179 19 H -0.175 1.175 20 C -0.108 4.108 21 N -0.131 5.131 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.227 0.773 38 H 0.169 0.831 39 H 0.091 0.909 40 H 0.225 0.775 41 H 0.188 0.812 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.790 -0.148 -4.069 5.562 hybrid contribution -0.337 -0.166 -0.251 0.451 sum -4.126 -0.313 -4.319 5.982 Atomic orbital electron populations 1.26172 1.20966 1.04264 1.04445 0.79151 0.66866 0.66779 0.66322 1.26146 1.06309 1.19095 1.04443 1.26173 1.06302 1.07911 1.15474 1.26146 1.06264 1.01156 1.16171 1.21428 1.01222 0.95881 0.97342 1.21546 0.99751 0.80025 0.99043 1.45940 1.54475 1.13098 1.25140 1.17037 0.80007 0.83147 0.82134 1.90878 1.37574 1.75884 1.35657 1.20421 1.06892 0.94778 0.95035 1.21193 0.99583 0.90345 0.98662 1.18740 1.05955 0.95295 0.97322 1.23995 0.90410 0.98076 1.03276 1.86530 1.25407 1.42563 1.80598 0.85856 0.78651 0.78212 0.80788 1.17240 1.17850 1.17490 1.21731 1.04858 0.86417 0.97842 1.41847 1.40049 1.10772 1.20459 0.91257 0.91310 0.91409 0.91244 0.91279 0.91245 0.91405 0.91312 0.91254 0.90180 0.90172 0.91118 0.91116 0.91138 0.91145 0.77331 0.83068 0.90905 0.77549 0.81235 0.74425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.12 8.65 101.05 0.87 1.99 16 2 Si 1.01 -3.71 12.19 -169.99 -2.07 -5.78 16 3 C -0.45 0.85 8.65 101.05 0.87 1.73 16 4 C -0.45 1.09 8.65 101.05 0.87 1.97 16 5 C -0.41 1.17 4.45 37.16 0.17 1.34 16 6 C -0.12 0.34 4.70 -26.73 -0.13 0.22 16 7 C 0.12 -0.02 5.67 -4.04 -0.02 -0.04 16 8 N -0.73 0.15 5.55 -61.62 -0.34 -0.19 16 9 C 0.59 2.01 7.79 -12.86 -0.10 1.91 16 10 O -0.52 -3.97 16.88 5.19 0.09 -3.88 16 11 C -0.06 -0.14 7.06 -81.98 -0.58 -0.71 16 12 C -0.07 -0.25 10.59 -39.12 -0.41 -0.66 16 13 C -0.17 -0.30 5.47 -105.02 -0.57 -0.87 16 14 C -0.05 0.00 3.01 36.01 0.11 0.10 16 15 O -0.55 -0.59 12.86 -35.23 -0.45 -1.04 16 16 Si 0.94 -1.07 25.87 -169.99 -4.40 -5.47 16 17 H -0.25 -0.01 7.11 56.52 0.40 0.39 16 18 H -0.25 0.17 7.11 56.52 0.40 0.58 16 19 H -0.25 0.24 7.11 56.52 0.40 0.65 16 20 C 0.03 -0.01 10.45 -16.91 -0.18 -0.19 16 21 N -0.53 0.58 5.99 -9.39 -0.06 0.52 16 22 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 23 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 24 H 0.07 -0.18 7.79 -51.93 -0.40 -0.59 16 25 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 26 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.18 7.79 -51.93 -0.40 -0.59 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 31 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 32 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 33 H 0.07 -0.26 7.79 -51.93 -0.40 -0.66 16 34 H 0.07 -0.26 7.79 -51.93 -0.40 -0.67 16 35 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 36 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.39 -1.37 7.60 -40.82 -0.31 -1.68 16 38 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 40 H 0.38 -1.31 8.74 45.56 0.40 -0.91 16 41 H 0.17 -0.50 6.19 -52.49 -0.32 -0.83 16 42 H 0.42 -2.00 8.19 -40.82 -0.33 -2.33 16 LS Contribution 351.67 15.07 5.30 5.30 Total: 0.00 -9.07 351.67 -7.42 -16.49 By element: Atomic # 1 Polarization: -6.33 SS G_CDS: -6.39 Total: -12.72 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 0.90 Total: 6.77 kcal Atomic # 7 Polarization: 0.73 SS G_CDS: -0.40 Total: 0.33 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.37 Total: -4.92 kcal Atomic # 14 Polarization: -4.78 SS G_CDS: -6.47 Total: -11.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -9.07 -7.42 -16.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_10543058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.413 kcal (2) G-P(sol) polarization free energy of solvation -9.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds