Wall clock time and date at job start Tue Mar 9 2021 12:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35538 * 125.67687 * 2 1 4 4 C 1.35448 * 108.87147 * 179.83118 * 3 2 1 5 5 C 1.50694 * 126.06993 * 180.16344 * 4 3 2 6 6 O 1.42897 * 109.47412 * 300.28653 * 5 4 3 7 7 Si 1.86307 * 109.47517 * 180.28532 * 5 4 3 8 8 H 1.48497 * 109.46996 * 180.02562 * 7 5 4 9 9 H 1.48499 * 109.46891 * 300.00127 * 7 5 4 10 10 H 1.48497 * 109.46689 * 60.00353 * 7 5 4 11 11 C 1.39842 * 107.86554 * 0.43025 * 4 3 2 12 12 C 1.37654 * 125.67988 * 180.30820 * 2 1 3 13 13 C 1.46679 * 126.23031 * 359.97438 * 12 2 1 14 14 O 1.21690 * 120.00217 * 5.03370 * 13 12 2 15 15 N 1.34774 * 119.99623 * 185.02890 * 13 12 2 16 16 C 1.46502 * 119.99814 * 185.09798 * 15 13 12 17 17 C 1.53006 * 109.46954 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.46897 * 180.02562 * 17 16 15 19 19 Si 1.86296 * 109.46996 * 179.97438 * 18 17 16 20 20 C 1.86298 * 109.46876 * 60.00309 * 19 18 17 21 21 C 1.86301 * 109.47012 * 179.97438 * 19 18 17 22 22 C 1.86295 * 109.47472 * 300.00211 * 19 18 17 23 23 H 1.09003 * 109.47030 * 264.16177 * 1 2 3 24 24 H 1.09000 * 109.47263 * 144.16388 * 1 2 3 25 25 H 1.09003 * 109.47552 * 24.16093 * 1 2 3 26 26 H 1.07999 * 125.56117 * 359.97438 * 3 2 1 27 27 H 1.09004 * 109.47100 * 60.28694 * 5 4 3 28 28 H 0.96705 * 114.00832 * 179.97438 * 6 5 4 29 29 H 1.08004 * 126.45841 * 179.71557 * 11 4 3 30 30 H 0.97003 * 120.00474 * 5.10339 * 15 13 12 31 31 H 1.08995 * 109.47463 * 300.00149 * 16 15 13 32 32 H 1.09003 * 109.46765 * 60.00686 * 16 15 13 33 33 H 1.09003 * 109.46745 * 299.99832 * 17 16 15 34 34 H 1.08996 * 109.47416 * 60.00247 * 17 16 15 35 35 H 1.08999 * 109.47345 * 300.00095 * 18 17 16 36 36 H 1.09003 * 109.46976 * 60.00161 * 18 17 16 37 37 H 1.09003 * 109.47685 * 59.99936 * 20 19 18 38 38 H 1.09005 * 109.47411 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.47397 * 299.99625 * 20 19 18 40 40 H 1.09003 * 109.46841 * 60.00626 * 21 19 18 41 41 H 1.09007 * 109.46977 * 180.02562 * 21 19 18 42 42 H 1.08995 * 109.47429 * 300.00063 * 21 19 18 43 43 H 1.09003 * 109.47036 * 60.00231 * 22 19 18 44 44 H 1.09005 * 109.46989 * 179.97438 * 22 19 18 45 45 H 1.09003 * 109.47299 * 299.99936 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5520 0.7094 0.0038 5 6 4.7535 1.6189 0.0086 6 8 4.7270 2.4493 -1.1540 7 14 6.3089 0.5934 0.0038 8 1 7.4928 1.4897 0.0091 9 1 6.3365 -0.2696 1.2120 10 1 6.3370 -0.2574 -1.2130 11 6 3.5779 -0.6888 -0.0038 12 6 2.2678 -1.1181 -0.0060 13 6 1.8124 -2.5124 -0.0130 14 8 0.6255 -2.7644 -0.1063 15 7 2.7084 -3.5144 0.0839 16 6 2.2667 -4.9062 -0.0352 17 6 3.4714 -5.8380 0.1114 18 6 3.0101 -7.2914 -0.0136 19 14 4.4771 -8.4259 0.1641 20 6 5.2648 -8.1657 1.8322 21 6 3.9153 -10.1957 0.0128 22 6 5.7179 -8.0510 -1.1739 23 1 -0.3633 -0.1045 1.0224 24 1 -0.3634 -0.8331 -0.6017 25 1 -0.3634 0.9376 -0.4206 26 1 1.9080 2.1236 -0.0004 27 1 4.7329 2.2435 0.9017 28 1 5.4724 3.0623 -1.2168 29 1 4.4583 -1.3144 -0.0075 30 1 3.6459 -3.3142 0.2325 31 1 1.5409 -5.1253 0.7480 32 1 1.8055 -5.0587 -1.0110 33 1 4.1974 -5.6189 -0.6716 34 1 3.9322 -5.6853 1.0873 35 1 2.2838 -7.5107 0.7691 36 1 2.5496 -7.4438 -0.9897 37 1 4.5389 -8.3851 2.6152 38 1 6.1229 -8.8298 1.9365 39 1 5.5935 -7.1302 1.9213 40 1 3.4541 -10.3483 -0.9631 41 1 4.7735 -10.8596 0.1172 42 1 3.1895 -10.4149 0.7959 43 1 6.0465 -7.0155 -1.0848 44 1 6.5764 -8.7145 -1.0696 45 1 5.2570 -8.2032 -2.1499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_10803934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:49 Heat of formation + Delta-G solvation = -73.974054 kcal Electronic energy + Delta-G solvation = -21907.861214 eV Core-core repulsion = 18663.280676 eV Total energy + Delta-G solvation = -3244.580538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.54438 -40.27200 -37.62380 -36.81976 -34.32318 -33.45423 -30.81278 -29.39107 -28.54301 -28.29431 -28.26389 -26.87693 -25.53235 -23.42744 -22.50636 -21.05211 -20.39736 -18.74114 -18.29027 -17.16879 -16.95761 -16.68155 -16.28579 -15.92182 -15.35395 -15.19745 -14.99715 -14.51760 -14.48056 -14.16794 -14.04806 -13.97735 -13.78373 -13.48927 -13.43021 -13.31995 -13.27586 -13.17544 -13.02071 -13.00133 -12.95885 -12.49633 -12.39420 -11.99180 -11.79907 -11.71195 -11.24581 -10.68846 -10.64366 -10.41546 -10.27070 -10.21322 -9.71675 -9.22168 0.36071 1.28509 1.49883 1.53115 1.63985 1.68285 1.98041 2.03901 2.04916 2.08122 2.22094 2.35790 2.77791 3.56415 3.79338 3.85352 4.11429 4.11863 4.14545 4.24322 4.31767 4.32976 4.37333 4.63861 4.66658 4.69720 4.74707 4.77633 4.83543 4.83736 4.88559 4.89785 4.90717 4.91013 5.06300 5.14047 5.27028 5.31377 5.52230 5.61910 5.65105 5.69601 5.71005 5.88082 6.16062 6.42816 6.96014 7.07180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.417 5.417 3 C 0.053 3.947 4 C -0.186 4.186 5 C -0.046 4.046 6 O -0.567 6.567 7 Si 0.978 3.022 8 H -0.259 1.259 9 H -0.254 1.254 10 H -0.273 1.273 11 C -0.139 4.139 12 C -0.074 4.074 13 C 0.583 3.417 14 O -0.585 6.585 15 N -0.710 5.710 16 C 0.121 3.879 17 C -0.120 4.120 18 C -0.421 4.421 19 Si 1.088 2.912 20 C -0.466 4.466 21 C -0.473 4.473 22 C -0.467 4.467 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.112 0.888 26 H 0.195 0.805 27 H 0.090 0.910 28 H 0.395 0.605 29 H 0.159 0.841 30 H 0.415 0.585 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 1.336 1.727 4.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.089 5.089 3 C -0.084 4.084 4 C -0.192 4.192 5 C -0.156 4.156 6 O -0.376 6.376 7 Si 0.802 3.198 8 H -0.183 1.183 9 H -0.178 1.178 10 H -0.197 1.197 11 C -0.166 4.166 12 C -0.187 4.187 13 C 0.372 3.628 14 O -0.467 6.467 15 N -0.362 5.362 16 C -0.002 4.002 17 C -0.158 4.158 18 C -0.506 4.506 19 Si 1.279 2.721 20 C -0.572 4.572 21 C -0.578 4.578 22 C -0.573 4.573 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.130 0.870 26 H 0.212 0.788 27 H 0.108 0.892 28 H 0.245 0.755 29 H 0.177 0.823 30 H 0.252 0.748 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.849 0.249 1.539 3.248 hybrid contribution 0.175 0.486 0.050 0.519 sum 3.024 0.734 1.588 3.494 Atomic orbital electron populations 1.22356 0.74950 1.05645 1.04460 1.44105 1.07677 1.04982 1.52172 1.22313 0.89818 0.92260 1.03982 1.19000 0.94087 0.93078 1.13018 1.24048 1.03578 0.97124 0.90899 1.86460 1.52645 1.55088 1.43423 0.85318 0.75107 0.79265 0.80085 1.18342 1.17790 1.19742 1.21397 0.94822 0.95072 1.05266 1.19998 0.90760 0.87686 1.20289 1.17208 0.85381 0.84308 0.75898 1.90774 1.17636 1.85480 1.52825 1.45682 1.11614 1.05992 1.72875 1.21594 0.98506 0.78751 1.01377 1.21487 0.96476 0.93756 1.04073 1.26300 1.15413 1.03527 1.05334 0.77994 0.64598 0.64266 0.65258 1.26353 1.07387 1.04936 1.18574 1.26408 1.05881 1.21204 1.04327 1.26359 1.12149 1.05311 1.13477 0.90030 0.89978 0.86984 0.78839 0.89213 0.75494 0.82334 0.74805 0.92407 0.92470 0.89666 0.89619 0.90323 0.90352 0.91518 0.91656 0.90812 0.91525 0.91589 0.91507 0.90828 0.91652 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.12 10.49 127.77 1.34 1.46 16 2 N -0.42 -2.24 3.16 -534.32 -1.69 -3.93 16 3 C 0.05 0.15 11.27 83.48 0.94 1.09 16 4 C -0.19 -0.60 5.44 -20.12 -0.11 -0.71 16 5 C -0.05 0.06 2.99 71.23 0.21 0.28 16 6 O -0.57 0.19 12.85 -148.98 -1.91 -1.72 16 7 Si 0.98 -1.86 25.92 68.60 1.78 -0.08 16 8 H -0.26 0.52 7.11 99.48 0.71 1.22 16 9 H -0.25 0.39 7.11 99.48 0.71 1.10 16 10 H -0.27 -0.52 7.11 99.48 0.71 0.19 16 11 C -0.14 -0.52 8.83 22.57 0.20 -0.32 16 12 C -0.07 -0.53 6.89 40.35 0.28 -0.25 16 13 C 0.58 5.18 7.77 86.45 0.67 5.86 16 14 O -0.58 -8.97 14.78 -4.32 -0.06 -9.03 16 15 N -0.71 -1.58 5.53 -467.07 -2.58 -4.16 16 16 C 0.12 0.14 5.68 86.38 0.49 0.63 16 17 C -0.12 0.60 4.70 30.60 0.14 0.74 16 18 C -0.42 2.23 4.45 71.98 0.32 2.55 16 19 Si 1.09 -7.65 12.19 68.60 0.84 -6.81 16 20 C -0.47 2.20 8.65 113.37 0.98 3.18 16 21 C -0.47 1.46 8.65 113.37 0.98 2.44 16 22 C -0.47 2.14 8.65 113.37 0.98 3.13 16 23 H 0.08 0.06 8.14 -2.39 -0.02 0.05 16 24 H 0.08 0.51 6.54 -2.39 -0.02 0.49 16 25 H 0.11 -0.45 8.12 -2.39 -0.02 -0.47 16 26 H 0.19 -0.51 8.06 -2.91 -0.02 -0.54 16 27 H 0.09 -0.49 7.96 -2.38 -0.02 -0.51 16 28 H 0.40 -3.65 8.74 -74.05 -0.65 -4.30 16 29 H 0.16 -0.18 5.81 -2.91 -0.02 -0.20 16 30 H 0.41 -1.41 7.42 -92.71 -0.69 -2.10 16 31 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.08 -0.62 7.79 -2.39 -0.02 -0.63 16 34 H 0.09 -0.63 7.79 -2.39 -0.02 -0.65 16 35 H 0.08 -0.38 7.96 -2.39 -0.02 -0.39 16 36 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 37 H 0.07 -0.27 7.96 -2.39 -0.02 -0.28 16 38 H 0.06 -0.25 7.96 -2.38 -0.02 -0.27 16 39 H 0.07 -0.41 7.79 -2.39 -0.02 -0.43 16 40 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 41 H 0.06 -0.16 7.96 -2.38 -0.02 -0.18 16 42 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 43 H 0.07 -0.40 7.79 -2.39 -0.02 -0.41 16 44 H 0.06 -0.24 7.96 -2.38 -0.02 -0.26 16 45 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 Total: 0.00 -19.09 370.13 4.18 -14.91 By element: Atomic # 1 Polarization: -9.63 SS G_CDS: 0.39 Total: -9.25 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: 7.43 Total: 20.07 kcal Atomic # 7 Polarization: -3.82 SS G_CDS: -4.27 Total: -8.09 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -1.98 Total: -10.75 kcal Atomic # 14 Polarization: -9.51 SS G_CDS: 2.61 Total: -6.89 kcal Total: -19.09 4.18 -14.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_10803934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.065 kcal (2) G-P(sol) polarization free energy of solvation -19.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds