Wall clock time and date at job start Tue Mar 9 2021 13:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37656 * 125.67879 * 2 1 4 4 C 1.46674 * 126.23137 * 359.96308 * 3 2 1 5 5 O 1.21694 * 120.00262 * 354.49928 * 4 3 2 6 6 N 1.34774 * 120.00106 * 174.49184 * 4 3 2 7 7 C 1.46498 * 120.00427 * 185.08860 * 6 4 3 8 8 C 1.52993 * 109.47422 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.47430 * 180.02562 * 8 7 6 10 10 Si 1.86302 * 109.47403 * 180.02562 * 9 8 7 11 11 C 1.86301 * 109.47193 * 59.99793 * 10 9 8 12 12 C 1.86303 * 109.46932 * 179.97438 * 10 9 8 13 13 C 1.86295 * 109.47020 * 299.99631 * 10 9 8 14 14 C 1.37873 * 107.53227 * 179.97438 * 3 2 1 15 15 C 1.39833 * 107.08968 * 359.97438 * 14 3 2 16 16 C 1.35453 * 107.86263 * 0.02562 * 15 14 3 17 17 C 1.50699 * 125.56329 * 179.97438 * 16 15 14 18 18 O 1.42900 * 109.47106 * 210.02537 * 17 16 15 19 19 Si 1.86294 * 109.47303 * 330.02895 * 17 16 15 20 20 H 1.48505 * 109.47194 * 59.99881 * 19 17 16 21 21 H 1.48500 * 109.47136 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47204 * 299.99848 * 19 17 16 23 23 H 1.08998 * 109.46986 * 94.59057 * 1 2 3 24 24 H 1.09001 * 109.46641 * 214.59085 * 1 2 3 25 25 H 1.09001 * 109.47012 * 334.58485 * 1 2 3 26 26 H 0.97006 * 120.00039 * 5.08795 * 6 4 3 27 27 H 1.09001 * 109.47376 * 300.00739 * 7 6 4 28 28 H 1.09005 * 109.46811 * 60.00167 * 7 6 4 29 29 H 1.09004 * 109.47399 * 299.99875 * 8 7 6 30 30 H 1.08997 * 109.47272 * 59.99965 * 8 7 6 31 31 H 1.09009 * 109.47012 * 300.00273 * 9 8 7 32 32 H 1.08997 * 109.47093 * 59.99645 * 9 8 7 33 33 H 1.09001 * 109.46603 * 60.00157 * 11 10 9 34 34 H 1.08994 * 109.46588 * 180.02562 * 11 10 9 35 35 H 1.09001 * 109.46906 * 300.00288 * 11 10 9 36 36 H 1.09005 * 109.47058 * 60.00001 * 12 10 9 37 37 H 1.09004 * 109.47075 * 179.97438 * 12 10 9 38 38 H 1.08993 * 109.47321 * 299.99708 * 12 10 9 39 39 H 1.09001 * 109.46913 * 59.99814 * 13 10 9 40 40 H 1.08993 * 109.47705 * 180.02562 * 13 10 9 41 41 H 1.09005 * 109.47350 * 300.00232 * 13 10 9 42 42 H 1.08000 * 126.45025 * 180.02562 * 14 3 2 43 43 H 1.07992 * 126.06973 * 179.74022 * 15 14 3 44 44 H 1.09003 * 109.47019 * 90.03079 * 17 16 15 45 45 H 0.96703 * 114.00074 * 60.00636 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2679 1.1182 0.0000 4 6 1.8124 2.5124 -0.0008 5 8 0.6264 2.7651 -0.1025 6 7 2.7075 3.5138 0.1114 7 6 2.2460 4.8997 0.2229 8 6 3.4539 5.8319 0.3362 9 6 2.9720 7.2793 0.4533 10 14 4.4428 8.4144 0.5905 11 6 5.5090 8.2357 -0.9268 12 6 3.8559 10.1769 0.7323 13 6 5.4344 7.9660 2.1026 14 6 3.5780 0.6888 0.0006 15 6 3.5522 -0.7093 0.0015 16 6 2.2556 -1.1009 0.0009 17 6 1.7710 -2.5279 0.0011 18 8 0.5136 -2.6040 -0.6738 19 14 3.0124 -3.6055 -0.8754 20 1 4.3191 -3.5263 -0.1741 21 1 2.5352 -5.0117 -0.8747 22 1 3.1730 -3.1374 -2.2756 23 1 -0.3633 -0.0822 -1.0244 24 1 -0.3632 -0.8460 0.5834 25 1 -0.3633 0.9282 0.4411 26 1 3.6573 3.3168 0.1183 27 1 1.6668 5.1622 -0.6624 28 1 1.6213 5.0044 1.1100 29 1 4.0335 5.5696 1.2214 30 1 4.0782 5.7271 -0.5511 31 1 2.3921 7.5419 -0.4316 32 1 2.3478 7.3837 1.3407 33 1 4.9287 8.4982 -1.8114 34 1 6.3697 8.8995 -0.8461 35 1 5.8523 7.2045 -1.0101 36 1 3.2319 10.2818 1.6199 37 1 4.7164 10.8411 0.8131 38 1 3.2760 10.4390 -0.1525 39 1 5.7777 6.9348 2.0192 40 1 6.2946 8.6303 2.1833 41 1 4.8106 8.0705 2.9904 42 1 4.4583 1.3144 0.0011 43 1 4.4132 -1.3611 -0.0018 44 1 1.6530 -2.8715 1.0288 45 1 0.5437 -2.3130 -1.5955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_10803936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:32 Heat of formation + Delta-G solvation = -80.090910 kcal Electronic energy + Delta-G solvation = -21928.522824 eV Core-core repulsion = 18683.677039 eV Total energy + Delta-G solvation = -3244.845785 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.53667 -40.14092 -37.79749 -36.75514 -34.11917 -33.34167 -31.33522 -29.58412 -28.46780 -28.46334 -27.76767 -27.35527 -25.78752 -23.02619 -22.58198 -21.32902 -20.33094 -18.85820 -18.15198 -17.05143 -16.96272 -16.61996 -16.25837 -15.77632 -15.50983 -15.03196 -14.81039 -14.76092 -14.48225 -14.26747 -14.16685 -14.08432 -13.97191 -13.85159 -13.51529 -13.42834 -13.23095 -13.14082 -13.13339 -13.11525 -12.97499 -12.62346 -12.40171 -12.07508 -11.93687 -11.88005 -11.03661 -10.86097 -10.83622 -10.74630 -10.54410 -10.09140 -9.71506 -9.05741 0.45100 1.01199 1.41993 1.47602 1.63076 1.69498 1.77663 1.83241 1.84371 1.96958 2.43693 2.45925 2.60448 3.21241 3.56914 3.76967 3.99140 4.01759 4.07905 4.23314 4.34657 4.39822 4.47789 4.53433 4.61867 4.64288 4.68190 4.70712 4.72086 4.72966 4.73219 4.75240 4.83237 4.95213 5.00550 5.11210 5.15921 5.29641 5.41938 5.47561 5.51483 5.51581 5.72689 6.00854 6.17251 6.34377 6.52109 7.23686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.391 5.391 3 C -0.051 4.051 4 C 0.589 3.411 5 O -0.547 6.547 6 N -0.721 5.721 7 C 0.122 3.878 8 C -0.121 4.121 9 C -0.412 4.412 10 Si 1.013 2.987 11 C -0.451 4.451 12 C -0.453 4.453 13 C -0.451 4.451 14 C -0.136 4.136 15 C -0.208 4.208 16 C 0.013 3.987 17 C -0.063 4.063 18 O -0.542 6.542 19 Si 0.979 3.021 20 H -0.247 1.247 21 H -0.252 1.252 22 H -0.250 1.250 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.403 0.597 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.124 0.876 45 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 0.342 -0.069 3.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.063 5.063 3 C -0.166 4.166 4 C 0.377 3.623 5 O -0.426 6.426 6 N -0.373 5.373 7 C -0.001 4.001 8 C -0.159 4.159 9 C -0.497 4.497 10 Si 1.209 2.791 11 C -0.559 4.559 12 C -0.560 4.560 13 C -0.559 4.559 14 C -0.162 4.162 15 C -0.232 4.232 16 C -0.105 4.105 17 C -0.173 4.173 18 O -0.347 6.347 19 Si 0.799 3.201 20 H -0.170 1.170 21 H -0.175 1.175 22 H -0.174 1.174 23 H 0.095 0.905 24 H 0.111 0.889 25 H 0.118 0.882 26 H 0.238 0.762 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.141 0.859 45 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.611 -0.176 0.033 2.618 hybrid contribution 0.281 0.524 -0.199 0.627 sum 2.893 0.348 -0.166 2.918 Atomic orbital electron populations 1.22366 0.75384 1.05531 1.04107 1.43757 1.07063 1.03994 1.51474 1.20060 0.90510 0.87522 1.18473 1.16981 0.85581 0.83549 0.76220 1.90803 1.16417 1.84863 1.50531 1.45686 1.09875 1.06556 1.75145 1.21529 0.97250 0.78878 1.02477 1.21426 0.97259 0.94395 1.02820 1.26145 1.14703 1.03558 1.05291 0.79154 0.66413 0.66541 0.67023 1.26169 1.09800 1.04504 1.15390 1.26149 1.06067 1.19256 1.04524 1.26170 1.09077 1.05303 1.15315 1.21277 0.94406 0.95151 1.05360 1.20655 0.95101 0.95519 1.11949 1.21128 0.90940 0.89343 1.09129 1.24910 0.94278 0.94322 1.03762 1.86505 1.30014 1.89070 1.29092 0.85294 0.76816 0.78159 0.79857 1.17028 1.17534 1.17356 0.90533 0.88895 0.88236 0.76193 0.91236 0.91367 0.90962 0.90955 0.90248 0.90256 0.91293 0.91327 0.91295 0.91286 0.91284 0.91279 0.91285 0.91327 0.91298 0.83618 0.83498 0.85885 0.77458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.09 9.27 59.85 0.55 0.65 16 2 N -0.39 -0.93 3.16 -115.62 -0.37 -1.30 16 3 C -0.05 -0.14 6.88 -81.98 -0.56 -0.70 16 4 C 0.59 2.02 7.77 -12.86 -0.10 1.92 16 5 O -0.55 -3.57 14.65 5.19 0.08 -3.50 16 6 N -0.72 -0.20 5.54 -61.62 -0.34 -0.55 16 7 C 0.12 -0.01 5.68 -4.05 -0.02 -0.03 16 8 C -0.12 0.31 4.70 -26.73 -0.13 0.19 16 9 C -0.41 1.13 4.45 37.16 0.17 1.29 16 10 Si 1.01 -3.55 12.19 -169.99 -2.07 -5.62 16 11 C -0.45 1.02 8.65 101.05 0.87 1.89 16 12 C -0.45 0.81 8.65 101.05 0.87 1.68 16 13 C -0.45 1.02 8.65 101.05 0.87 1.89 16 14 C -0.14 -0.11 10.35 -39.12 -0.41 -0.51 16 15 C -0.21 -0.16 9.37 -39.98 -0.37 -0.54 16 16 C 0.01 0.01 6.14 -81.95 -0.50 -0.49 16 17 C -0.06 0.05 2.90 36.01 0.10 0.16 16 18 O -0.54 0.32 10.50 -35.23 -0.37 -0.05 16 19 Si 0.98 -1.35 26.55 -169.99 -4.51 -5.86 16 20 H -0.25 0.29 6.79 56.52 0.38 0.68 16 21 H -0.25 0.04 7.11 56.52 0.40 0.44 16 22 H -0.25 0.12 7.11 56.52 0.40 0.52 16 23 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 24 H 0.09 0.05 7.10 -51.93 -0.37 -0.32 16 25 H 0.10 0.30 6.19 -51.93 -0.32 -0.02 16 26 H 0.40 -0.95 7.38 -40.82 -0.30 -1.25 16 27 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 28 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 29 H 0.07 -0.24 7.79 -51.93 -0.40 -0.65 16 30 H 0.07 -0.24 7.79 -51.93 -0.40 -0.65 16 31 H 0.08 -0.20 7.96 -51.92 -0.41 -0.61 16 32 H 0.08 -0.20 7.96 -51.93 -0.41 -0.62 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 34 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 35 H 0.07 -0.17 7.79 -51.93 -0.40 -0.57 16 36 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 37 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 39 H 0.07 -0.17 7.79 -51.93 -0.40 -0.57 16 40 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 41 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 42 H 0.15 -0.31 7.45 -52.49 -0.39 -0.70 16 43 H 0.15 -0.14 6.64 -52.49 -0.35 -0.49 16 44 H 0.12 -0.21 7.96 -51.93 -0.41 -0.62 16 45 H 0.38 -1.18 8.70 45.56 0.40 -0.78 16 LS Contribution 365.76 15.07 5.51 5.51 Total: 0.00 -7.15 365.76 -7.89 -15.04 By element: Atomic # 1 Polarization: -3.90 SS G_CDS: -7.17 Total: -11.07 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 1.35 Total: 7.39 kcal Atomic # 7 Polarization: -1.14 SS G_CDS: -0.71 Total: -1.85 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -0.29 Total: -3.55 kcal Atomic # 14 Polarization: -4.89 SS G_CDS: -6.59 Total: -11.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -7.15 -7.89 -15.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_10803936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.048 kcal (2) G-P(sol) polarization free energy of solvation -7.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds