Wall clock time and date at job start Tue Mar 9 2021 13:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35446 * 125.56215 * 2 1 4 4 C 1.50704 * 126.07249 * 0.02562 * 3 2 1 5 5 O 1.42900 * 109.47207 * 129.39938 * 4 3 2 6 6 Si 1.86292 * 109.47129 * 249.39923 * 4 3 2 7 7 H 1.48506 * 109.46861 * 185.05903 * 6 4 3 8 8 H 1.48500 * 109.47566 * 305.06214 * 6 4 3 9 9 H 1.48499 * 109.47051 * 65.06445 * 6 4 3 10 10 C 1.39843 * 107.86368 * 180.02562 * 3 2 1 11 11 C 1.50695 * 126.45852 * 180.02562 * 10 3 2 12 12 C 1.37870 * 107.08107 * 0.02562 * 10 3 2 13 13 C 1.46683 * 126.22763 * 180.02562 * 12 10 3 14 14 O 1.21688 * 120.00216 * 0.02562 * 13 12 10 15 15 N 1.34783 * 119.99693 * 179.97438 * 13 12 10 16 16 C 1.46499 * 119.99864 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.46917 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.47158 * 179.97438 * 17 16 15 19 19 Si 1.86296 * 109.47183 * 179.97438 * 18 17 16 20 20 C 1.86289 * 109.47267 * 60.00213 * 19 18 17 21 21 C 1.86302 * 109.46921 * 180.02562 * 19 18 17 22 22 C 1.86307 * 109.47191 * 299.99955 * 19 18 17 23 23 N 1.35530 * 125.56253 * 179.70063 * 2 1 3 24 24 H 1.09008 * 109.47313 * 84.71080 * 1 2 3 25 25 H 1.08997 * 109.47450 * 324.70732 * 1 2 3 26 26 H 1.08995 * 109.47189 * 204.70514 * 1 2 3 27 27 H 1.08999 * 109.46477 * 9.40372 * 4 3 2 28 28 H 0.96691 * 114.00130 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.47442 * 89.99623 * 11 10 3 30 30 H 1.09004 * 109.47418 * 209.99864 * 11 10 3 31 31 H 1.09000 * 109.47255 * 330.00111 * 11 10 3 32 32 H 0.96995 * 120.00126 * 0.02562 * 15 13 12 33 33 H 1.08997 * 109.47320 * 300.00175 * 16 15 13 34 34 H 1.08997 * 109.47190 * 60.00079 * 16 15 13 35 35 H 1.08997 * 109.47101 * 300.00104 * 17 16 15 36 36 H 1.08997 * 109.47293 * 59.99937 * 17 16 15 37 37 H 1.08998 * 109.46932 * 300.00785 * 18 17 16 38 38 H 1.09004 * 109.46379 * 60.00101 * 18 17 16 39 39 H 1.09006 * 109.47294 * 59.99883 * 20 19 18 40 40 H 1.09000 * 109.47642 * 179.97438 * 20 19 18 41 41 H 1.09004 * 109.47252 * 299.99740 * 20 19 18 42 42 H 1.09004 * 109.47203 * 60.00205 * 21 19 18 43 43 H 1.09003 * 109.46921 * 179.97438 * 21 19 18 44 44 H 1.08997 * 109.47227 * 299.99909 * 21 19 18 45 45 H 1.09000 * 109.46870 * 59.99952 * 22 19 18 46 46 H 1.08993 * 109.46722 * 180.02562 * 22 19 18 47 47 H 1.08997 * 109.47073 * 300.00198 * 22 19 18 48 48 H 0.97002 * 125.67951 * 359.96340 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2947 1.1018 0.0000 4 6 1.8199 2.5321 0.0005 5 8 2.4818 3.2534 1.0416 6 14 2.2102 3.3166 -1.6435 7 1 1.8542 4.7577 -1.6011 8 1 3.6604 3.1731 -1.9287 9 1 1.4268 2.6444 -2.7110 10 6 3.6270 0.6767 -0.0006 11 6 4.8485 1.5591 -0.0003 12 6 3.6121 -0.7019 -0.0015 13 6 4.7860 -1.5815 -0.0019 14 8 5.9048 -1.1030 -0.0008 15 7 4.6252 -2.9197 -0.0023 16 6 5.7976 -3.7982 -0.0032 17 6 5.3406 -5.2584 -0.0042 18 6 6.5650 -6.1760 -0.0058 19 14 6.0086 -7.9539 -0.0062 20 6 4.9837 -8.2835 -1.5265 21 6 7.4995 -9.0711 -0.0073 22 6 4.9864 -8.2851 1.5158 23 7 2.2952 -1.1025 0.0058 24 1 -0.3634 0.0947 -1.0234 25 1 -0.3634 0.8387 0.5937 26 1 -0.3633 -0.9336 0.4295 27 1 0.7433 2.5573 0.1689 28 1 2.2238 4.1833 1.1012 29 1 5.1433 1.7713 1.0275 30 1 5.6642 1.0508 -0.5146 31 1 4.6218 2.4937 -0.5134 32 1 3.7334 -3.3011 -0.0028 33 1 6.3961 -3.6046 -0.8934 34 1 6.3969 -3.6053 0.8865 35 1 4.7419 -5.4523 0.8858 36 1 4.7415 -5.4510 -0.8941 37 1 7.1634 -5.9818 -0.8959 38 1 7.1644 -5.9834 0.8841 39 1 5.5818 -8.0898 -2.4169 40 1 4.6585 -9.3239 -1.5270 41 1 4.1114 -7.6299 -1.5254 42 1 8.0988 -8.8782 0.8825 43 1 7.1739 -10.1114 -0.0071 44 1 8.0979 -8.8775 -0.8975 45 1 4.1141 -7.6314 1.5169 46 1 4.6613 -9.3254 1.5157 47 1 5.5861 -8.0922 2.4053 48 1 1.9833 -2.0210 0.0111 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_12297754.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:43 Heat of formation + Delta-G solvation = -91.932337 kcal Electronic energy + Delta-G solvation = -23903.257957 eV Core-core repulsion = 20502.361070 eV Total energy + Delta-G solvation = -3400.896887 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.62823 -40.31593 -37.60910 -36.87503 -34.04238 -33.62019 -32.70834 -29.45767 -29.20605 -28.32312 -28.27974 -28.08414 -26.81358 -25.54023 -22.54217 -22.37591 -20.65960 -19.97841 -19.25711 -18.27170 -17.08176 -16.95221 -16.78025 -16.10962 -15.78603 -15.26650 -15.07187 -14.81924 -14.48872 -14.22509 -14.14497 -14.07918 -14.05979 -13.95663 -13.77836 -13.55758 -13.46554 -13.30347 -13.24669 -13.13061 -13.03017 -13.01919 -12.97538 -12.57800 -12.51024 -12.40725 -12.16952 -11.73836 -11.62499 -11.11234 -10.70342 -10.65931 -10.51770 -10.42139 -10.28045 -9.44651 -8.95031 0.35549 1.12057 1.44632 1.52987 1.69746 1.87991 2.00364 2.03616 2.07159 2.07510 2.19636 2.26973 2.76001 3.61501 3.80521 3.92055 4.06331 4.09136 4.14109 4.26436 4.33833 4.44700 4.51392 4.62067 4.67372 4.75191 4.81552 4.82043 4.82407 4.84349 4.87188 4.88353 4.89171 4.89402 4.97081 5.04906 5.09817 5.20362 5.24404 5.27136 5.33588 5.50645 5.60687 5.67520 5.69480 5.70599 5.87302 6.38424 6.55345 6.98484 7.08653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.091 3.909 3 C -0.200 4.200 4 C -0.031 4.031 5 O -0.562 6.562 6 Si 0.957 3.043 7 H -0.249 1.249 8 H -0.277 1.277 9 H -0.263 1.263 10 C -0.071 4.071 11 C -0.088 4.088 12 C -0.085 4.085 13 C 0.584 3.416 14 O -0.570 6.570 15 N -0.719 5.719 16 C 0.118 3.882 17 C -0.117 4.117 18 C -0.424 4.424 19 Si 1.091 2.909 20 C -0.465 4.465 21 C -0.475 4.475 22 C -0.466 4.466 23 N -0.520 5.520 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.394 0.606 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.410 0.590 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 -3.544 -0.325 8.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.029 4.029 3 C -0.206 4.206 4 C -0.143 4.143 5 O -0.371 6.371 6 Si 0.783 3.217 7 H -0.172 1.172 8 H -0.202 1.202 9 H -0.187 1.187 10 C -0.080 4.080 11 C -0.145 4.145 12 C -0.197 4.197 13 C 0.373 3.627 14 O -0.450 6.450 15 N -0.371 5.371 16 C -0.005 4.005 17 C -0.154 4.154 18 C -0.508 4.508 19 Si 1.281 2.719 20 C -0.572 4.572 21 C -0.580 4.580 22 C -0.572 4.572 23 N -0.119 5.119 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.117 0.883 28 H 0.243 0.757 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.246 0.754 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -6.964 -3.615 -1.026 7.913 hybrid contribution -0.132 -0.244 0.281 0.395 sum -7.096 -3.859 -0.745 8.112 Atomic orbital electron populations 1.20693 0.84360 1.05476 1.04856 1.20722 0.95041 0.84769 1.02361 1.18726 0.91956 0.94406 1.15547 1.23853 0.99263 0.90784 1.00370 1.86514 1.68819 1.27604 1.54124 0.85720 0.79851 0.79522 0.76641 1.17249 1.20241 1.18722 1.19945 0.95635 0.91575 1.00805 1.20358 0.94244 0.98026 1.01842 1.19905 0.83836 0.93697 1.22252 1.17250 0.87197 0.82300 0.75961 1.90806 1.25935 1.75959 1.52322 1.45811 1.11131 1.04837 1.75298 1.21571 0.87367 0.90143 1.01385 1.21460 0.98948 0.90904 1.04136 1.26334 1.01539 1.17818 1.05117 0.77953 0.64685 0.63879 0.65342 1.26340 1.09880 1.04904 1.16046 1.26434 1.16404 1.11006 1.04155 1.26342 1.09856 1.04903 1.16090 1.41696 1.04019 1.09271 1.56937 0.88626 0.88430 0.89196 0.88289 0.75660 0.91961 0.92459 0.91200 0.75376 0.92705 0.92748 0.89614 0.89581 0.90481 0.90508 0.91593 0.91601 0.90707 0.91594 0.91551 0.91582 0.90721 0.91602 0.91613 0.72622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.88 10.01 71.24 0.71 1.59 16 2 C 0.09 -0.08 7.13 41.34 0.29 0.21 16 3 C -0.20 -0.95 4.43 -20.12 -0.09 -1.04 16 4 C -0.03 -0.01 2.78 71.24 0.20 0.19 16 5 O -0.56 -1.13 12.31 -148.98 -1.83 -2.97 16 6 Si 0.96 1.62 26.84 68.60 1.84 3.46 16 7 H -0.25 -0.06 7.11 99.48 0.71 0.65 16 8 H -0.28 -2.11 5.73 99.48 0.57 -1.54 16 9 H -0.26 -0.73 7.11 99.48 0.71 -0.02 16 10 C -0.07 -0.73 5.89 -19.56 -0.12 -0.85 16 11 C -0.09 -1.11 9.12 71.23 0.65 -0.46 16 12 C -0.09 -0.62 7.06 40.35 0.28 -0.33 16 13 C 0.58 5.59 7.79 86.45 0.67 6.26 16 14 O -0.57 -10.40 14.80 -4.31 -0.06 -10.46 16 15 N -0.72 -0.73 5.55 -467.08 -2.59 -3.32 16 16 C 0.12 0.14 5.67 86.38 0.49 0.63 16 17 C -0.12 0.67 4.70 30.60 0.14 0.82 16 18 C -0.42 2.29 4.45 71.98 0.32 2.61 16 19 Si 1.09 -8.26 12.19 68.60 0.84 -7.42 16 20 C -0.47 2.58 8.65 113.37 0.98 3.56 16 21 C -0.47 1.52 8.65 113.37 0.98 2.50 16 22 C -0.47 2.54 8.65 113.37 0.98 3.52 16 23 N -0.52 0.75 5.99 -171.94 -1.03 -0.28 16 24 H 0.10 -1.05 8.14 -2.38 -0.02 -1.07 16 25 H 0.10 -1.00 7.21 -2.39 -0.02 -1.01 16 26 H 0.09 -1.11 8.14 -2.39 -0.02 -1.13 16 27 H 0.10 -0.61 6.66 -2.39 -0.02 -0.62 16 28 H 0.39 -2.87 8.74 -74.06 -0.65 -3.52 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.92 6.49 -2.39 -0.02 0.90 16 31 H 0.07 0.76 5.04 -2.39 -0.01 0.75 16 32 H 0.41 -2.72 7.60 -92.71 -0.70 -3.42 16 33 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.09 -0.72 7.79 -2.39 -0.02 -0.74 16 36 H 0.09 -0.73 7.79 -2.39 -0.02 -0.75 16 37 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 38 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 39 H 0.06 -0.30 7.96 -2.38 -0.02 -0.32 16 40 H 0.06 -0.30 7.96 -2.39 -0.02 -0.32 16 41 H 0.07 -0.50 7.79 -2.38 -0.02 -0.52 16 42 H 0.06 -0.17 7.96 -2.38 -0.02 -0.19 16 43 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 44 H 0.06 -0.17 7.96 -2.39 -0.02 -0.19 16 45 H 0.07 -0.50 7.79 -2.39 -0.02 -0.51 16 46 H 0.06 -0.30 7.96 -2.39 -0.02 -0.32 16 47 H 0.06 -0.29 7.96 -2.39 -0.02 -0.31 16 48 H 0.43 -4.09 8.19 -92.71 -0.76 -4.85 16 Total: 0.00 -23.63 386.07 3.13 -20.50 By element: Atomic # 1 Polarization: -18.20 SS G_CDS: -0.53 Total: -18.73 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 6.51 Total: 19.21 kcal Atomic # 7 Polarization: 0.02 SS G_CDS: -3.62 Total: -3.60 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -1.90 Total: -13.43 kcal Atomic # 14 Polarization: -6.63 SS G_CDS: 2.68 Total: -3.96 kcal Total: -23.63 3.13 -20.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_12297754.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.431 kcal (2) G-P(sol) polarization free energy of solvation -23.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds