Wall clock time and date at job start Tue Mar 9 2021 13:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86297 * 109.47243 * 2 1 4 4 C 1.86293 * 109.47256 * 239.99781 * 2 1 3 5 5 C 1.86306 * 109.47073 * 119.99754 * 2 1 3 6 6 C 1.53002 * 109.46944 * 59.99879 * 5 2 1 7 7 C 1.52999 * 109.47080 * 179.97438 * 6 5 2 8 8 N 1.46502 * 109.47362 * 180.02562 * 7 6 5 9 9 C 1.34772 * 120.00273 * 180.02562 * 8 7 6 10 10 O 1.21568 * 119.99934 * 0.02562 * 9 8 7 11 11 C 1.47696 * 120.00000 * 180.02562 * 9 8 7 12 12 C 1.39619 * 120.16689 * 0.27132 * 11 9 8 13 13 C 1.37896 * 119.87506 * 180.23002 * 12 11 9 14 14 C 1.50706 * 119.88664 * 179.77249 * 13 12 11 15 15 O 1.42895 * 109.46938 * 299.72172 * 14 13 12 16 16 Si 1.86299 * 109.46748 * 179.72337 * 14 13 12 17 17 H 1.48503 * 109.47188 * 60.00070 * 16 14 13 18 18 H 1.48506 * 109.47139 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47505 * 299.99883 * 16 14 13 20 20 C 1.38410 * 120.22216 * 359.49240 * 13 12 11 21 21 C 1.38254 * 120.33786 * 0.26014 * 20 13 12 22 22 C 1.38283 * 120.11411 * 359.97438 * 21 20 13 23 23 F 1.35103 * 120.10656 * 179.97438 * 22 21 20 24 24 H 1.08997 * 109.47557 * 300.00185 * 1 2 3 25 25 H 1.09007 * 109.47473 * 60.00033 * 1 2 3 26 26 H 1.09005 * 109.47465 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47685 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47266 * 299.99783 * 3 2 1 29 29 H 1.09002 * 109.47176 * 59.99887 * 3 2 1 30 30 H 1.09000 * 109.47358 * 299.99814 * 4 2 1 31 31 H 1.09000 * 109.47354 * 59.99705 * 4 2 1 32 32 H 1.09004 * 109.47221 * 180.02562 * 4 2 1 33 33 H 1.08997 * 109.46979 * 300.00414 * 5 2 1 34 34 H 1.08995 * 109.47442 * 180.02562 * 5 2 1 35 35 H 1.09002 * 109.47025 * 60.00038 * 6 5 2 36 36 H 1.08995 * 109.47305 * 300.00395 * 6 5 2 37 37 H 1.09002 * 109.46964 * 60.00241 * 7 6 5 38 38 H 1.08995 * 109.47570 * 300.00473 * 7 6 5 39 39 H 0.97005 * 119.99783 * 0.02562 * 8 7 6 40 40 H 1.08000 * 120.06283 * 359.97438 * 12 11 9 41 41 H 1.09000 * 109.47161 * 59.72438 * 14 13 12 42 42 H 0.96698 * 114.00355 * 299.99977 * 15 14 13 43 43 H 1.07991 * 119.83523 * 180.27306 * 20 13 12 44 44 H 1.07995 * 119.94112 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5210 5 6 2.4839 -0.8782 1.5212 6 6 1.9739 -2.3207 1.5213 7 6 2.4844 -3.0421 2.7702 8 7 1.9965 -4.4235 2.7700 9 6 2.3222 -5.2534 3.7807 10 8 3.0204 -4.8555 4.6929 11 6 1.8308 -6.6462 3.7802 12 6 1.0334 -7.1084 2.7314 13 6 0.5739 -8.4086 2.7394 14 6 -0.2911 -8.9063 1.6101 15 8 -1.4841 -8.1226 1.5429 16 14 -0.7361 -10.6905 1.9087 17 1 -1.4783 -10.8079 3.1896 18 1 -1.5890 -11.1809 0.7963 19 1 0.5037 -11.5050 1.9786 20 6 0.9093 -9.2597 3.7781 21 6 1.7026 -8.8129 4.8185 22 6 2.1670 -7.5104 4.8271 23 9 2.9418 -7.0739 5.8442 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.5739 1.7565 0.0005 28 1 2.1207 2.2703 -0.8900 29 1 2.1206 2.2703 0.8900 30 1 2.1207 -1.9059 -1.5210 31 1 2.1206 -0.3645 -2.4111 32 1 3.5740 -0.8786 -1.5208 33 1 2.1205 -0.3644 2.4111 34 1 3.5739 -0.8778 1.5215 35 1 2.3372 -2.8346 0.6313 36 1 0.8839 -2.3207 1.5212 37 1 2.1214 -2.5284 3.6604 38 1 3.5743 -3.0421 2.7698 39 1 1.4391 -4.7409 2.0423 40 1 0.7734 -6.4477 1.9176 41 1 0.2537 -8.8201 0.6699 42 1 -2.0200 -8.1523 2.3472 43 1 0.5497 -10.2779 3.7758 44 1 1.9600 -9.4823 5.6259 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_12335834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:38 Heat of formation + Delta-G solvation = -143.075813 kcal Electronic energy + Delta-G solvation = -23528.275877 eV Core-core repulsion = 19903.982276 eV Total energy + Delta-G solvation = -3624.293601 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.83882 -41.25955 -39.91016 -37.63365 -36.75379 -33.94003 -32.53515 -32.24736 -29.57893 -28.46352 -28.46026 -27.22631 -26.73745 -25.08103 -23.12370 -22.49112 -21.35649 -19.29814 -18.41753 -18.30311 -17.46281 -16.97649 -16.64558 -16.55995 -16.30095 -16.08113 -15.70158 -15.34976 -15.33196 -14.77482 -14.38264 -14.25988 -14.18596 -14.10842 -13.95975 -13.80240 -13.55974 -13.43360 -13.25431 -13.15171 -13.13069 -13.10712 -12.89193 -12.61564 -12.44251 -12.24771 -11.88499 -11.81363 -11.09745 -10.85577 -10.83377 -10.65322 -10.52140 -10.41731 -10.07607 -9.82871 -0.50925 -0.10531 0.97262 1.29224 1.35778 1.68757 1.72053 1.77740 1.82660 1.84672 2.09852 2.50573 2.59823 3.02364 3.21052 3.35505 3.45360 3.53196 3.85787 3.98828 4.00378 4.05087 4.22910 4.31827 4.45597 4.62177 4.64242 4.66211 4.68399 4.70963 4.72388 4.73351 4.73420 4.74747 4.77338 4.85418 4.96730 5.02938 5.10979 5.28448 5.39555 5.46978 5.51605 5.52010 5.53772 6.35361 6.41705 7.17392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.012 2.988 3 C -0.453 4.453 4 C -0.451 4.451 5 C -0.412 4.412 6 C -0.121 4.121 7 C 0.119 3.881 8 N -0.726 5.726 9 C 0.556 3.444 10 O -0.521 6.521 11 C -0.174 4.174 12 C -0.029 4.029 13 C -0.141 4.141 14 C -0.079 4.079 15 O -0.537 6.537 16 Si 0.946 3.054 17 H -0.249 1.249 18 H -0.250 1.250 19 H -0.248 1.248 20 C -0.069 4.069 21 C -0.156 4.156 22 C 0.166 3.834 23 F -0.111 7.111 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.400 0.600 40 H 0.141 0.859 41 H 0.123 0.877 42 H 0.379 0.621 43 H 0.135 0.865 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 -1.600 -3.893 5.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.208 2.792 3 C -0.560 4.560 4 C -0.558 4.558 5 C -0.497 4.497 6 C -0.159 4.159 7 C -0.004 4.004 8 N -0.379 5.379 9 C 0.343 3.657 10 O -0.398 6.398 11 C -0.178 4.178 12 C -0.048 4.048 13 C -0.142 4.142 14 C -0.190 4.190 15 O -0.342 6.342 16 Si 0.768 3.232 17 H -0.172 1.172 18 H -0.174 1.174 19 H -0.172 1.172 20 C -0.087 4.087 21 C -0.175 4.175 22 C 0.146 3.854 23 F -0.089 7.089 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.236 0.764 40 H 0.159 0.841 41 H 0.141 0.859 42 H 0.226 0.774 43 H 0.153 0.847 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.486 -2.004 -3.627 4.832 hybrid contribution -0.107 0.257 0.371 0.464 sum -2.593 -1.746 -3.256 4.514 Atomic orbital electron populations 1.26170 1.20906 1.04363 1.04415 0.79159 0.66934 0.66728 0.66352 1.26147 1.06275 1.19142 1.04423 1.26168 1.06252 1.07994 1.15435 1.26144 1.06203 1.01206 1.16158 1.21430 1.01372 0.95787 0.97317 1.21555 0.99686 0.80059 0.99106 1.45939 1.54063 1.12782 1.25115 1.17973 0.80569 0.84734 0.82439 1.90874 1.36972 1.76685 1.35235 1.20112 1.05106 0.95012 0.97553 1.21027 0.92495 0.95256 0.96020 1.20310 1.01532 0.94688 0.97633 1.24974 0.87122 1.07001 0.99862 1.86525 1.33820 1.71474 1.42391 0.85719 0.81590 0.74482 0.81407 1.17239 1.17371 1.17185 1.21120 0.95567 0.99576 0.92438 1.21148 1.00686 0.94431 1.01192 1.17751 0.90640 0.92119 0.84926 1.91632 1.71169 1.89768 1.56304 0.91287 0.91322 0.91290 0.91279 0.91281 0.91276 0.91308 0.91314 0.91295 0.90227 0.90233 0.91001 0.90960 0.91195 0.91207 0.76419 0.84092 0.85923 0.77400 0.84714 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.99 8.65 101.05 0.87 1.87 16 2 Si 1.01 -3.47 12.19 -169.99 -2.07 -5.55 16 3 C -0.45 0.78 8.65 101.05 0.87 1.65 16 4 C -0.45 1.01 8.65 101.05 0.87 1.88 16 5 C -0.41 1.08 4.45 37.16 0.17 1.24 16 6 C -0.12 0.31 4.70 -26.73 -0.13 0.18 16 7 C 0.12 0.01 5.67 -4.04 -0.02 -0.01 16 8 N -0.73 -0.10 5.51 -61.30 -0.34 -0.43 16 9 C 0.56 1.93 7.77 -12.40 -0.10 1.83 16 10 O -0.52 -4.05 15.34 5.31 0.08 -3.97 16 11 C -0.17 -0.28 5.88 -104.91 -0.62 -0.90 16 12 C -0.03 0.04 9.10 -39.19 -0.36 -0.32 16 13 C -0.14 0.26 5.38 -104.68 -0.56 -0.30 16 14 C -0.08 0.23 2.82 36.01 0.10 0.34 16 15 O -0.54 1.24 12.77 -35.23 -0.45 0.79 16 16 Si 0.95 -2.52 25.06 -169.99 -4.26 -6.78 16 17 H -0.25 0.61 7.11 56.52 0.40 1.01 16 18 H -0.25 0.22 7.11 56.52 0.40 0.62 16 19 H -0.25 0.52 7.11 56.52 0.40 0.92 16 20 C -0.07 0.11 8.66 -39.51 -0.34 -0.23 16 21 C -0.16 0.05 10.01 -39.56 -0.40 -0.35 16 22 C 0.17 0.41 7.29 -38.96 -0.28 0.12 16 23 F -0.11 -0.59 15.55 2.25 0.04 -0.55 16 24 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 25 H 0.07 -0.13 7.96 -51.92 -0.41 -0.54 16 26 H 0.07 -0.16 7.79 -51.93 -0.40 -0.57 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.17 7.79 -51.93 -0.40 -0.57 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 33 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 34 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 35 H 0.07 -0.24 7.79 -51.93 -0.40 -0.65 16 36 H 0.07 -0.24 7.79 -51.93 -0.40 -0.65 16 37 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 38 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.40 -1.13 6.51 -40.82 -0.27 -1.39 16 40 H 0.14 -0.49 6.40 -52.49 -0.34 -0.82 16 41 H 0.12 -0.49 7.96 -51.93 -0.41 -0.90 16 42 H 0.38 -1.97 8.70 45.56 0.40 -1.58 16 43 H 0.14 -0.45 4.85 -52.49 -0.25 -0.71 16 44 H 0.15 -0.32 8.06 -52.49 -0.42 -0.74 16 LS Contribution 367.03 15.07 5.53 5.53 Total: 0.00 -7.93 367.03 -7.66 -15.59 By element: Atomic # 1 Polarization: -5.35 SS G_CDS: -6.28 Total: -11.63 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 0.09 Total: 7.00 kcal Atomic # 7 Polarization: -0.10 SS G_CDS: -0.34 Total: -0.43 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: -0.37 Total: -3.18 kcal Atomic # 9 Polarization: -0.59 SS G_CDS: 0.04 Total: -0.55 kcal Atomic # 14 Polarization: -6.00 SS G_CDS: -6.33 Total: -12.33 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -7.93 -7.66 -15.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_12335834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.485 kcal (2) G-P(sol) polarization free energy of solvation -7.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds