Wall clock time and date at job start Tue Mar 9 2021 13:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46834 * 2 1 4 4 C 1.53006 * 109.46862 * 65.00342 * 3 2 1 5 5 C 1.53000 * 109.47378 * 185.00075 * 3 2 1 6 6 C 1.50697 * 109.47451 * 175.80498 * 5 3 2 7 7 O 1.21274 * 120.00092 * 322.12422 * 6 5 3 8 8 N 1.34779 * 120.00152 * 142.11960 * 6 5 3 9 9 C 1.46494 * 120.00148 * 184.88380 * 8 6 5 10 10 C 1.53005 * 109.47095 * 180.02562 * 9 8 6 11 11 C 1.52995 * 109.46941 * 179.97438 * 10 9 8 12 12 Si 1.86307 * 109.46979 * 180.02562 * 11 10 9 13 13 C 1.86297 * 109.47090 * 59.99880 * 12 11 10 14 14 C 1.86296 * 109.46850 * 180.02562 * 12 11 10 15 15 C 1.86295 * 109.46866 * 299.99695 * 12 11 10 16 16 N 1.46500 * 109.46915 * 55.80567 * 5 3 2 17 17 C 1.36340 * 125.63598 * 60.02481 * 16 5 3 18 18 C 1.34851 * 108.22178 * 179.97438 * 17 16 5 19 19 C 1.40896 * 107.41288 * 0.26395 * 18 17 16 20 20 C 1.34846 * 107.41994 * 359.56744 * 19 18 17 21 21 C 1.50694 * 125.89428 * 180.15598 * 20 19 18 22 22 O 1.42892 * 109.47538 * 150.32405 * 21 20 19 23 23 Si 1.86295 * 109.47025 * 30.31972 * 21 20 19 24 24 H 1.48500 * 109.47069 * 60.00324 * 23 21 20 25 25 H 1.48500 * 109.47127 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47695 * 300.00405 * 23 21 20 27 27 H 1.08998 * 109.47436 * 299.99234 * 1 2 3 28 28 H 1.08996 * 109.47507 * 59.99880 * 1 2 3 29 29 H 1.09002 * 109.46766 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46836 * 240.00835 * 2 1 3 31 31 H 1.08996 * 109.47507 * 120.00119 * 2 1 3 32 32 H 1.08994 * 109.47625 * 305.00610 * 3 2 1 33 33 H 1.08997 * 109.46695 * 295.19867 * 4 3 2 34 34 H 1.08995 * 109.47038 * 55.20088 * 4 3 2 35 35 H 1.09003 * 109.46988 * 175.19470 * 4 3 2 36 36 H 1.09000 * 109.47111 * 295.80772 * 5 3 2 37 37 H 0.97001 * 119.99463 * 4.88390 * 8 6 5 38 38 H 1.09006 * 109.46804 * 299.99837 * 9 8 6 39 39 H 1.08994 * 109.47382 * 60.00163 * 9 8 6 40 40 H 1.08997 * 109.47080 * 300.00077 * 10 9 8 41 41 H 1.09007 * 109.46798 * 59.99887 * 10 9 8 42 42 H 1.09007 * 109.47247 * 300.00022 * 11 10 9 43 43 H 1.08994 * 109.47401 * 59.99992 * 11 10 9 44 44 H 1.08997 * 109.47040 * 60.00267 * 13 12 11 45 45 H 1.09004 * 109.46889 * 180.02562 * 13 12 11 46 46 H 1.08996 * 109.47040 * 299.99813 * 13 12 11 47 47 H 1.08997 * 109.47336 * 60.00399 * 14 12 11 48 48 H 1.09004 * 109.46734 * 179.97438 * 14 12 11 49 49 H 1.08997 * 109.47407 * 299.99810 * 14 12 11 50 50 H 1.09010 * 109.47185 * 60.00295 * 15 12 11 51 51 H 1.08997 * 109.47444 * 179.97438 * 15 12 11 52 52 H 1.08999 * 109.47814 * 300.00393 * 15 12 11 53 53 H 1.08005 * 125.89253 * 359.97438 * 17 16 5 54 54 H 1.07995 * 126.29769 * 179.97438 * 18 17 16 55 55 H 1.08004 * 126.28896 * 179.69931 * 19 18 17 56 56 H 1.09007 * 109.47043 * 270.32559 * 21 20 19 57 57 H 0.96705 * 114.00223 * 300.00276 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6351 2.1265 1.3075 5 6 3.5647 1.4445 -0.1257 6 6 4.0585 2.8645 -0.2294 7 8 3.4239 3.6826 -0.8610 8 7 5.2052 3.2255 0.3799 9 6 5.6302 4.6274 0.3698 10 6 6.9541 4.7644 1.1245 11 6 7.3983 6.2284 1.1134 12 14 9.0107 6.3951 2.0317 13 6 10.3085 5.3460 1.2034 14 6 9.5512 8.1779 2.0187 15 6 8.7843 5.8283 3.7918 16 7 3.9566 0.7024 -1.3265 17 6 3.5928 1.0094 -2.6041 18 6 4.1474 0.0996 -3.4307 19 6 4.8754 -0.8058 -2.6335 20 6 4.7459 -0.4091 -1.3513 21 6 5.3617 -1.0821 -0.1518 22 8 5.6139 -0.1087 0.8634 23 14 6.9647 -1.8911 -0.6485 24 1 7.8978 -0.8609 -1.1714 25 1 7.5712 -2.5548 0.5334 26 1 6.7027 -2.9027 -1.7035 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6053 1.9816 -0.8417 33 1 0.5489 2.2014 1.3571 34 1 1.9980 1.5402 2.1516 35 1 2.0704 3.1252 1.3450 36 1 4.0024 0.9709 0.7530 37 1 5.7490 2.5569 0.8252 38 1 5.7635 4.9592 -0.6600 39 1 4.8705 5.2409 0.8538 40 1 6.8214 4.4324 2.1542 41 1 7.7137 4.1508 0.6400 42 1 7.5312 6.5600 0.0835 43 1 6.6389 6.8422 1.5975 44 1 10.4409 5.6777 0.1736 45 1 11.2517 5.4433 1.7410 46 1 9.9920 4.3031 1.2114 47 1 8.7918 8.7913 2.5037 48 1 10.4944 8.2755 2.5564 49 1 9.6835 8.5100 0.9891 50 1 8.4678 4.7852 3.7998 51 1 9.7277 5.9254 4.3290 52 1 8.0250 6.4420 4.2765 53 1 2.9681 1.8383 -2.9028 54 1 4.0476 0.0677 -4.5055 55 1 5.4361 -1.6593 -2.9852 56 1 4.6768 -1.8384 0.2320 57 1 6.2169 0.5965 0.5911 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_12360566.mol2 57 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:06:57 Heat of formation + Delta-G solvation = -78.244100 kcal Electronic energy + Delta-G solvation = -31496.411828 eV Core-core repulsion = 27629.495651 eV Total energy + Delta-G solvation = -3866.916177 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.225 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.82186 -40.76270 -37.91546 -37.76680 -36.73565 -33.92458 -33.10441 -31.11982 -30.83654 -29.43793 -28.31410 -28.25999 -28.10864 -26.60176 -26.05778 -24.88062 -22.54254 -22.14517 -21.82755 -20.95677 -20.34340 -18.90455 -18.25613 -17.39280 -17.29956 -16.69284 -16.48440 -16.04471 -15.71236 -15.54425 -15.41540 -14.95198 -14.80436 -14.45924 -14.40618 -14.23672 -14.13097 -14.06215 -13.97463 -13.77675 -13.49305 -13.36976 -13.30540 -13.28314 -13.24667 -13.06330 -13.01433 -12.99050 -12.95822 -12.61911 -12.51026 -12.36551 -12.05805 -11.95059 -11.85261 -11.72791 -11.71443 -11.62533 -11.28483 -10.69813 -10.64314 -10.62712 -10.42091 -10.25687 -9.60477 -9.00226 0.87546 1.13001 1.30169 1.54717 1.60974 1.83245 1.94580 2.00669 2.03755 2.08234 2.09010 2.32154 2.77202 3.14026 3.45282 3.51014 3.64134 3.81301 3.97930 4.09646 4.13161 4.14129 4.23020 4.35026 4.39430 4.46034 4.54817 4.60420 4.61819 4.64029 4.66963 4.67685 4.76081 4.82333 4.82668 4.88601 4.89522 4.91150 4.91953 4.94006 5.01694 5.02667 5.05950 5.12813 5.24300 5.24508 5.25944 5.30574 5.34130 5.39848 5.51518 5.61272 5.69208 5.71810 5.93613 6.14786 6.27871 6.35433 6.42870 7.00280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.086 4.086 4 C -0.144 4.144 5 C 0.111 3.889 6 C 0.507 3.493 7 O -0.564 6.564 8 N -0.711 5.711 9 C 0.117 3.883 10 C -0.120 4.120 11 C -0.422 4.422 12 Si 1.088 2.912 13 C -0.467 4.467 14 C -0.475 4.475 15 C -0.465 4.465 16 N -0.418 5.418 17 C -0.014 4.014 18 C -0.205 4.205 19 C -0.209 4.209 20 C -0.015 4.015 21 C -0.055 4.055 22 O -0.543 6.543 23 Si 1.006 2.994 24 H -0.263 1.263 25 H -0.261 1.261 26 H -0.258 1.258 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.162 0.838 37 H 0.413 0.587 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.064 0.936 52 H 0.066 0.934 53 H 0.151 0.849 54 H 0.142 0.858 55 H 0.149 0.851 56 H 0.138 0.862 57 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.399 -2.012 4.594 6.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.106 4.106 4 C -0.202 4.202 5 C 0.006 3.994 6 C 0.291 3.709 7 O -0.441 6.441 8 N -0.364 5.364 9 C -0.007 4.007 10 C -0.157 4.157 11 C -0.506 4.506 12 Si 1.279 2.721 13 C -0.573 4.573 14 C -0.580 4.580 15 C -0.571 4.571 16 N -0.095 5.095 17 C -0.144 4.144 18 C -0.229 4.229 19 C -0.233 4.233 20 C -0.126 4.126 21 C -0.164 4.164 22 O -0.349 6.349 23 Si 0.828 3.172 24 H -0.187 1.187 25 H -0.185 1.185 26 H -0.182 1.182 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.179 0.821 37 H 0.251 0.749 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.083 0.917 52 H 0.085 0.915 53 H 0.169 0.831 54 H 0.160 0.840 55 H 0.167 0.833 56 H 0.156 0.844 57 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.218 -1.965 4.561 5.918 hybrid contribution -0.147 0.807 -0.648 1.046 sum 3.071 -1.158 3.913 5.107 Atomic orbital electron populations 1.21780 0.95058 1.02103 1.01908 1.21477 0.96530 0.94274 1.02456 1.21322 0.91015 0.98203 1.00033 1.21825 1.02694 0.99741 0.95925 1.22084 0.98153 0.89152 0.90047 1.20916 0.81115 0.90288 0.78562 1.90718 1.57602 1.54171 1.41635 1.46074 1.23027 1.11314 1.56014 1.21591 0.97524 0.80880 1.00675 1.21489 0.94788 0.97889 1.01568 1.26297 1.17389 0.97702 1.09255 0.77990 0.64436 0.64458 0.65199 1.26359 1.12925 1.10402 1.07621 1.26441 1.05747 1.21766 1.04082 1.26328 1.04456 1.06419 1.19910 1.43752 1.38359 1.22087 1.05322 1.21897 1.05967 1.03077 0.83410 1.21063 1.04279 0.97932 0.99631 1.20913 1.07336 1.03250 0.91833 1.21111 1.01748 0.92617 0.97113 1.24873 1.09907 0.94932 0.86721 1.86406 1.69138 1.40129 1.39227 0.84887 0.73844 0.79333 0.79183 1.18680 1.18480 1.18172 0.91765 0.93589 0.92097 0.92614 0.90588 0.91800 0.91055 0.90471 0.93773 0.82145 0.74925 0.93091 0.92326 0.89191 0.89679 0.90682 0.90347 0.91710 0.91671 0.90629 0.91541 0.91620 0.91674 0.90548 0.91701 0.91496 0.83118 0.84001 0.83297 0.84437 0.77003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.03 9.67 71.98 0.70 0.67 16 2 C -0.11 -0.04 5.28 30.59 0.16 0.12 16 3 C -0.09 -0.17 1.59 -10.79 -0.02 -0.18 16 4 C -0.14 0.00 8.71 71.98 0.63 0.63 16 5 C 0.11 0.08 2.00 44.24 0.09 0.17 16 6 C 0.51 2.06 5.64 87.66 0.49 2.56 16 7 O -0.56 -7.11 16.15 -3.01 -0.05 -7.16 16 8 N -0.71 1.46 5.55 -463.07 -2.57 -1.11 16 9 C 0.12 -0.13 5.68 86.38 0.49 0.36 16 10 C -0.12 0.86 4.70 30.59 0.14 1.01 16 11 C -0.42 2.73 4.45 71.98 0.32 3.05 16 12 Si 1.09 -8.79 12.19 68.60 0.84 -7.95 16 13 C -0.47 2.63 8.65 113.37 0.98 3.61 16 14 C -0.48 1.69 8.65 113.37 0.98 2.67 16 15 C -0.46 2.86 8.65 113.37 0.98 3.84 16 16 N -0.42 -1.12 1.59 -491.52 -0.78 -1.90 16 17 C -0.01 -0.09 10.48 83.21 0.87 0.78 16 18 C -0.20 -1.15 10.86 22.14 0.24 -0.91 16 19 C -0.21 -0.66 9.43 22.14 0.21 -0.46 16 20 C -0.01 -0.01 6.15 41.08 0.25 0.24 16 21 C -0.05 0.25 2.96 71.23 0.21 0.46 16 22 O -0.54 3.71 9.85 -148.98 -1.47 2.25 16 23 Si 1.01 -3.98 26.59 68.60 1.82 -2.16 16 24 H -0.26 0.52 7.11 99.48 0.71 1.22 16 25 H -0.26 0.62 7.11 99.48 0.71 1.33 16 26 H -0.26 0.52 6.82 99.48 0.68 1.20 16 27 H 0.06 -0.07 6.67 -2.39 -0.02 -0.08 16 28 H 0.04 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.06 0.19 7.25 -2.38 -0.02 0.17 16 31 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.06 0.45 7.61 -2.39 -0.02 0.44 16 33 H 0.07 -0.02 6.80 -2.39 -0.02 -0.04 16 34 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.04 0.13 7.13 -2.39 -0.02 0.11 16 36 H 0.16 -0.54 5.15 -2.39 -0.01 -0.55 16 37 H 0.41 -3.55 7.05 -92.71 -0.65 -4.21 16 38 H 0.05 0.15 8.14 -2.38 -0.02 0.13 16 39 H 0.06 0.07 8.14 -2.39 -0.02 0.06 16 40 H 0.09 -0.91 7.79 -2.39 -0.02 -0.93 16 41 H 0.08 -0.81 7.79 -2.38 -0.02 -0.83 16 42 H 0.07 -0.40 7.96 -2.38 -0.02 -0.41 16 43 H 0.08 -0.46 7.96 -2.39 -0.02 -0.48 16 44 H 0.06 -0.29 7.96 -2.39 -0.02 -0.31 16 45 H 0.06 -0.30 7.96 -2.38 -0.02 -0.32 16 46 H 0.07 -0.52 7.79 -2.39 -0.02 -0.54 16 47 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 48 H 0.06 -0.19 7.96 -2.38 -0.02 -0.21 16 49 H 0.06 -0.18 7.96 -2.39 -0.02 -0.20 16 50 H 0.08 -0.57 7.79 -2.38 -0.02 -0.59 16 51 H 0.06 -0.32 7.96 -2.39 -0.02 -0.34 16 52 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 53 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 54 H 0.14 0.52 8.06 -2.91 -0.02 0.50 16 55 H 0.15 0.08 6.71 -2.91 -0.02 0.06 16 56 H 0.14 -0.96 7.96 -2.38 -0.02 -0.98 16 57 H 0.38 -4.41 7.30 -74.05 -0.54 -4.95 16 Total: 0.00 -15.85 443.97 5.88 -9.97 By element: Atomic # 1 Polarization: -10.90 SS G_CDS: 0.35 Total: -10.55 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 7.73 Total: 18.61 kcal Atomic # 7 Polarization: 0.34 SS G_CDS: -3.35 Total: -3.01 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -1.52 Total: -4.92 kcal Atomic # 14 Polarization: -12.77 SS G_CDS: 2.66 Total: -10.11 kcal Total: -15.85 5.88 -9.97 kcal The number of atoms in the molecule is 57 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_12360566.mol2 57 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.270 kcal (2) G-P(sol) polarization free energy of solvation -15.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds