Wall clock time and date at job start Tue Mar 9 2021 13:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86296 * 109.46966 * 2 1 4 4 C 1.86304 * 109.46940 * 240.00338 * 2 1 3 5 5 C 1.86293 * 109.47174 * 120.00190 * 2 1 3 6 6 C 1.53005 * 109.47279 * 60.00156 * 5 2 1 7 7 C 1.53000 * 109.47108 * 180.02562 * 6 5 2 8 8 N 1.46494 * 109.46932 * 179.97438 * 7 6 5 9 9 C 1.34778 * 119.99835 * 179.97438 * 8 7 6 10 10 O 1.21696 * 120.00215 * 359.97438 * 9 8 7 11 11 C 1.46436 * 119.99894 * 180.02562 * 9 8 7 12 12 C 1.34806 * 119.99593 * 180.02562 * 11 9 8 13 13 C 1.47215 * 119.99742 * 179.97438 * 12 11 9 14 14 C 1.39835 * 120.16558 * 0.25578 * 13 12 11 15 15 C 1.37893 * 119.82392 * 180.23040 * 14 13 12 16 16 C 1.38403 * 120.16807 * 359.51074 * 15 14 13 17 17 C 1.50700 * 119.82534 * 180.27866 * 16 15 14 18 18 O 1.42902 * 109.47185 * 65.00304 * 17 16 15 19 19 Si 1.86305 * 109.47237 * 185.00044 * 17 16 15 20 20 H 1.48500 * 109.46999 * 59.99831 * 19 17 16 21 21 H 1.48493 * 109.47375 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47072 * 300.00498 * 19 17 16 23 23 C 1.38404 * 120.34900 * 0.25594 * 16 15 14 24 24 C 1.37896 * 120.16551 * 359.97438 * 23 16 15 25 25 H 1.09003 * 109.47153 * 300.00065 * 1 2 3 26 26 H 1.08999 * 109.47371 * 59.99661 * 1 2 3 27 27 H 1.08999 * 109.47281 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47160 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47348 * 299.99792 * 3 2 1 30 30 H 1.08995 * 109.47384 * 60.00265 * 3 2 1 31 31 H 1.09003 * 109.46664 * 299.99366 * 4 2 1 32 32 H 1.08999 * 109.47546 * 60.00102 * 4 2 1 33 33 H 1.09000 * 109.47003 * 180.02562 * 4 2 1 34 34 H 1.08995 * 109.47027 * 299.99643 * 5 2 1 35 35 H 1.09000 * 109.46957 * 180.02562 * 5 2 1 36 36 H 1.08994 * 109.47034 * 59.99548 * 6 5 2 37 37 H 1.08994 * 109.46445 * 299.99693 * 6 5 2 38 38 H 1.09003 * 109.47058 * 59.99753 * 7 6 5 39 39 H 1.09000 * 109.46943 * 299.99836 * 7 6 5 40 40 H 0.96995 * 120.00142 * 359.97438 * 8 7 6 41 41 H 1.07996 * 119.99567 * 359.97438 * 11 9 8 42 42 H 1.07996 * 120.00310 * 359.97438 * 12 11 9 43 43 H 1.08004 * 120.09366 * 0.02562 * 14 13 12 44 44 H 1.08002 * 119.91884 * 179.79492 * 15 14 13 45 45 H 1.08998 * 109.47440 * 304.99825 * 17 16 15 46 46 H 0.96704 * 113.99978 * 59.99649 * 18 17 16 47 47 H 1.07992 * 119.92040 * 179.97438 * 23 16 15 48 48 H 1.08002 * 120.08154 * 180.02562 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4840 -0.8782 1.5210 6 6 1.9740 -2.3208 1.5210 7 6 2.4835 -3.0419 2.7706 8 7 1.9948 -4.4229 2.7708 9 6 2.3203 -5.2527 3.7817 10 8 3.0207 -4.8550 4.6940 11 6 1.8322 -6.6333 3.7817 12 6 2.1574 -7.4632 4.7930 13 6 1.6662 -8.8510 4.7933 14 6 0.8666 -9.3136 3.7436 15 6 0.4064 -10.6134 3.7534 16 6 0.7425 -11.4624 4.7935 17 6 0.2405 -12.8833 4.7932 18 8 0.8113 -13.5900 3.6900 19 14 0.7325 -13.7161 6.3855 20 1 0.1394 -12.9818 7.5319 21 1 0.2384 -15.1164 6.3850 22 1 2.2125 -13.7138 6.5086 23 6 1.5376 -11.0134 5.8336 24 6 2.0015 -9.7149 5.8405 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.5739 1.7565 -0.0005 29 1 2.1206 2.2703 -0.8900 30 1 2.1207 2.2703 0.8899 31 1 2.1206 -1.9059 -1.5212 32 1 2.1207 -0.3643 -2.4112 33 1 3.5740 -0.8786 -1.5210 34 1 2.1207 -0.3644 2.4110 35 1 3.5740 -0.8778 1.5212 36 1 2.3373 -2.8345 0.6310 37 1 0.8841 -2.3207 1.5211 38 1 2.1198 -2.5279 3.6603 39 1 3.5735 -3.0418 2.7710 40 1 1.4369 -4.7400 2.0435 41 1 1.2110 -6.9864 2.9718 42 1 2.7782 -7.1099 5.6030 43 1 0.6072 -8.6536 2.9289 44 1 -0.2140 -10.9713 2.9451 45 1 -0.8457 -12.8850 4.7029 46 1 1.7775 -13.6286 3.7052 47 1 1.7952 -11.6816 6.6419 48 1 2.6222 -9.3660 6.6526 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_12360594.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:04 Heat of formation + Delta-G solvation = -83.123904 kcal Electronic energy + Delta-G solvation = -23073.962596 eV Core-core repulsion = 19637.958920 eV Total energy + Delta-G solvation = -3436.003675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.167 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.92543 -40.43503 -37.78733 -36.81719 -35.08869 -33.51771 -32.09069 -31.36943 -29.42036 -28.29925 -28.26103 -27.75016 -26.31959 -24.06628 -23.67879 -22.47218 -21.91823 -20.39980 -18.59338 -18.42506 -17.23046 -16.93780 -16.74219 -16.45811 -16.21376 -15.81038 -15.44714 -15.29206 -15.05948 -14.58030 -14.29325 -14.17036 -14.05548 -13.99958 -13.81755 -13.77068 -13.51491 -13.43054 -13.27356 -13.02326 -12.99609 -12.95731 -12.93832 -12.48409 -12.22241 -12.17892 -12.06140 -11.70321 -11.57612 -11.36009 -11.17818 -10.68538 -10.64125 -10.40763 -10.39986 -10.16264 -9.98959 -9.25274 -0.56315 0.37872 0.87724 1.17501 1.44221 1.51657 1.90895 1.94654 2.03382 2.08592 2.22272 2.27573 2.78031 2.80729 3.49230 3.60180 3.69064 3.78989 3.94358 4.09706 4.12678 4.18012 4.21791 4.34270 4.38247 4.47850 4.61043 4.69819 4.78653 4.83614 4.83776 4.88293 4.88939 4.90232 4.91164 4.91375 4.94418 5.06302 5.08920 5.15507 5.27731 5.36679 5.40424 5.46666 5.53287 5.59251 5.62525 5.69686 5.71370 5.89779 6.54207 6.68686 7.20622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.466 4.466 2 Si 1.088 2.912 3 C -0.474 4.474 4 C -0.466 4.466 5 C -0.424 4.424 6 C -0.118 4.118 7 C 0.116 3.884 8 N -0.713 5.713 9 C 0.537 3.463 10 O -0.597 6.597 11 C -0.209 4.209 12 C -0.022 4.022 13 C -0.082 4.082 14 C -0.100 4.100 15 C -0.099 4.099 16 C -0.112 4.112 17 C -0.078 4.078 18 O -0.551 6.551 19 Si 0.977 3.023 20 H -0.259 1.259 21 H -0.276 1.276 22 H -0.253 1.253 23 C -0.138 4.138 24 C -0.098 4.098 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.419 0.581 41 H 0.163 0.837 42 H 0.123 0.877 43 H 0.152 0.848 44 H 0.142 0.858 45 H 0.128 0.872 46 H 0.389 0.611 47 H 0.132 0.868 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 -0.531 -3.970 4.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.279 2.721 3 C -0.579 4.579 4 C -0.572 4.572 5 C -0.508 4.508 6 C -0.155 4.155 7 C -0.008 4.008 8 N -0.365 5.365 9 C 0.327 3.673 10 O -0.480 6.480 11 C -0.229 4.229 12 C -0.042 4.042 13 C -0.082 4.082 14 C -0.117 4.117 15 C -0.117 4.117 16 C -0.113 4.113 17 C -0.189 4.189 18 O -0.358 6.358 19 Si 0.803 3.197 20 H -0.184 1.184 21 H -0.201 1.201 22 H -0.177 1.177 23 C -0.155 4.155 24 C -0.116 4.116 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.256 0.744 41 H 0.180 0.820 42 H 0.141 0.859 43 H 0.169 0.831 44 H 0.160 0.840 45 H 0.146 0.854 46 H 0.238 0.762 47 H 0.149 0.851 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.425 -0.681 -2.736 3.719 hybrid contribution 0.446 0.404 -0.203 0.635 sum -1.979 -0.277 -2.939 3.554 Atomic orbital electron populations 1.26343 1.22078 1.04652 1.04128 0.77990 0.65145 0.64360 0.64595 1.26421 1.06276 1.21079 1.04141 1.26343 1.06207 1.08611 1.16040 1.26321 1.06180 1.01483 1.16800 1.21456 1.02164 0.95438 0.96452 1.21536 0.98736 0.80804 0.99714 1.45880 1.53180 1.12380 1.25035 1.18823 0.79696 0.87144 0.81624 1.90809 1.40613 1.78640 1.37954 1.23016 1.05408 0.92108 1.02373 1.22380 0.93702 0.91226 0.96844 1.19116 0.99749 0.93017 0.96347 1.21725 0.95841 0.96272 0.97894 1.21162 0.99416 0.92854 0.98246 1.20625 0.98078 0.97109 0.95443 1.24996 1.03023 0.90136 1.00719 1.86497 1.26791 1.75816 1.46681 0.85278 0.80454 0.78536 0.75466 1.18365 1.20148 1.17722 1.21167 0.98817 0.96681 0.98871 1.21538 0.98822 0.93163 0.98097 0.91576 0.91638 0.90709 0.91570 0.91565 0.91569 0.90711 0.91633 0.91577 0.90551 0.90548 0.89589 0.89598 0.92982 0.92973 0.74388 0.81955 0.85928 0.83051 0.83978 0.85448 0.76194 0.85096 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 2.44 8.65 113.37 0.98 3.42 16 2 Si 1.09 -8.05 12.19 68.60 0.84 -7.22 16 3 C -0.47 1.53 8.65 113.37 0.98 2.51 16 4 C -0.47 2.44 8.65 113.37 0.98 3.42 16 5 C -0.42 2.29 4.45 71.98 0.32 2.61 16 6 C -0.12 0.68 4.70 30.60 0.14 0.82 16 7 C 0.12 0.07 5.67 86.38 0.49 0.56 16 8 N -0.71 0.41 5.55 -467.34 -2.59 -2.18 16 9 C 0.54 3.10 7.74 86.38 0.67 3.77 16 10 O -0.60 -9.32 16.23 -4.34 -0.07 -9.39 16 11 C -0.21 0.01 9.41 23.62 0.22 0.23 16 12 C -0.02 -0.04 9.46 23.84 0.23 0.18 16 13 C -0.08 -0.03 5.87 -20.15 -0.12 -0.15 16 14 C -0.10 0.22 9.41 22.57 0.21 0.44 16 15 C -0.10 0.18 9.66 22.23 0.21 0.39 16 16 C -0.11 0.12 5.36 -19.79 -0.11 0.01 16 17 C -0.08 0.20 2.80 71.24 0.20 0.40 16 18 O -0.55 0.64 12.83 -148.98 -1.91 -1.27 16 19 Si 0.98 -1.82 25.12 68.60 1.72 -0.10 16 20 H -0.26 0.09 7.11 99.48 0.71 0.80 16 21 H -0.28 -0.51 7.11 99.48 0.71 0.20 16 22 H -0.25 0.44 7.04 99.48 0.70 1.14 16 23 C -0.14 0.06 8.65 22.23 0.19 0.25 16 24 C -0.10 -0.03 9.80 22.57 0.22 0.19 16 25 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 26 H 0.06 -0.28 7.96 -2.39 -0.02 -0.30 16 27 H 0.07 -0.47 7.79 -2.39 -0.02 -0.49 16 28 H 0.07 -0.18 7.96 -2.39 -0.02 -0.19 16 29 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 30 H 0.07 -0.18 7.96 -2.39 -0.02 -0.19 16 31 H 0.07 -0.47 7.79 -2.39 -0.02 -0.49 16 32 H 0.06 -0.28 7.96 -2.39 -0.02 -0.30 16 33 H 0.06 -0.29 7.96 -2.39 -0.02 -0.31 16 34 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 35 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 36 H 0.09 -0.72 7.79 -2.39 -0.02 -0.74 16 37 H 0.09 -0.72 7.79 -2.39 -0.02 -0.73 16 38 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.42 -3.32 8.45 -92.71 -0.78 -4.10 16 41 H 0.16 -1.21 6.07 -2.91 -0.02 -1.23 16 42 H 0.12 0.56 7.52 -2.91 -0.02 0.54 16 43 H 0.15 -1.12 6.17 -2.91 -0.02 -1.14 16 44 H 0.14 -0.60 8.06 -2.91 -0.02 -0.62 16 45 H 0.13 -0.56 7.96 -2.39 -0.02 -0.58 16 46 H 0.39 -2.80 8.70 -74.05 -0.64 -3.44 16 47 H 0.13 -0.35 4.84 -2.91 -0.01 -0.36 16 48 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 Total: 0.00 -18.94 397.06 4.08 -14.87 By element: Atomic # 1 Polarization: -14.03 SS G_CDS: 0.26 Total: -13.76 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 5.83 Total: 19.06 kcal Atomic # 7 Polarization: 0.41 SS G_CDS: -2.59 Total: -2.18 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -1.98 Total: -10.67 kcal Atomic # 14 Polarization: -9.88 SS G_CDS: 2.56 Total: -7.32 kcal Total: -18.94 4.08 -14.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_12360594.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.259 kcal (2) G-P(sol) polarization free energy of solvation -18.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds