Wall clock time and date at job start Tue Mar 9 2021 13:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35654 * 116.99934 * 2 1 4 4 C 1.38668 * 120.15331 * 0.02562 * 3 2 1 5 5 C 1.38098 * 120.08451 * 179.97438 * 4 3 2 6 6 C 1.38495 * 120.39172 * 0.04196 * 5 4 3 7 7 C 1.50706 * 119.85200 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.46938 * 119.99654 * 7 6 5 9 9 Si 1.86299 * 109.46748 * 359.97438 * 7 6 5 10 10 H 1.48503 * 109.47188 * 60.00070 * 9 7 6 11 11 H 1.48506 * 109.47139 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47505 * 299.99883 * 9 7 6 13 13 C 1.37827 * 120.30157 * 0.23118 * 6 5 4 14 14 C 1.39667 * 119.90811 * 359.47663 * 13 6 5 15 15 C 1.47534 * 120.19738 * 180.27484 * 14 13 6 16 16 O 1.21587 * 120.00415 * 180.27089 * 15 14 13 17 17 N 1.34785 * 119.99818 * 0.27057 * 15 14 13 18 18 C 1.46493 * 120.00051 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47174 * 179.97438 * 18 17 15 20 20 C 1.53005 * 109.47414 * 180.02562 * 19 18 17 21 21 Si 1.86298 * 109.47218 * 180.02562 * 20 19 18 22 22 C 1.86302 * 109.47310 * 60.00011 * 21 20 19 23 23 C 1.86298 * 109.46973 * 179.97438 * 21 20 19 24 24 C 1.86300 * 109.47030 * 300.00001 * 21 20 19 25 25 H 1.09001 * 109.47447 * 59.99706 * 1 2 3 26 26 H 1.08994 * 109.47532 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47056 * 299.99843 * 1 2 3 28 28 H 1.07998 * 119.95555 * 359.96820 * 4 3 2 29 29 H 1.08005 * 119.79800 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47161 * 239.99920 * 7 6 5 31 31 H 0.96698 * 114.00355 * 299.99977 * 8 7 6 32 32 H 1.08001 * 120.04781 * 179.74442 * 13 6 5 33 33 H 0.96993 * 119.99788 * 0.02562 * 17 15 14 34 34 H 1.08996 * 109.47454 * 300.00166 * 18 17 15 35 35 H 1.09008 * 109.47113 * 60.00381 * 18 17 15 36 36 H 1.08995 * 109.47731 * 300.00238 * 19 18 17 37 37 H 1.09000 * 109.47156 * 60.00354 * 19 18 17 38 38 H 1.09004 * 109.47023 * 300.00147 * 20 19 18 39 39 H 1.09000 * 109.46826 * 59.99960 * 20 19 18 40 40 H 1.08996 * 109.46886 * 59.99971 * 22 21 20 41 41 H 1.08999 * 109.47034 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.46762 * 300.00375 * 22 21 20 43 43 H 1.09000 * 109.47405 * 60.00019 * 23 21 20 44 44 H 1.08999 * 109.47075 * 179.97438 * 23 21 20 45 45 H 1.08996 * 109.47314 * 300.00085 * 23 21 20 46 46 H 1.08998 * 109.47388 * 60.00297 * 24 21 20 47 47 H 1.08999 * 109.47204 * 180.02562 * 24 21 20 48 48 H 1.09000 * 109.47027 * 299.99784 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2927 2.3737 0.0005 5 6 1.9211 3.6034 0.0011 6 6 3.3037 3.6837 0.0002 7 6 3.9768 5.0321 0.0002 8 8 4.7929 5.1570 1.1665 9 14 2.6826 6.3721 0.0007 10 1 1.8354 6.2417 1.2134 11 1 3.3458 7.7008 0.0013 12 1 1.8348 6.2421 -1.2116 13 6 4.0669 2.5360 -0.0060 14 6 3.4445 1.2857 -0.0004 15 6 4.2553 0.0532 -0.0009 16 8 3.7098 -1.0334 -0.0010 17 7 5.6009 0.1317 -0.0012 18 6 6.4060 -1.0922 -0.0011 19 6 7.8913 -0.7254 -0.0022 20 6 8.7323 -2.0036 -0.0028 21 14 10.5410 -1.5571 -0.0033 22 6 10.9339 -0.5559 1.5178 23 6 11.5649 -3.1134 -0.0032 24 6 10.9328 -0.5553 -1.5244 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.2140 2.3192 0.0004 29 1 1.3307 4.5078 0.0019 30 1 4.5983 5.1279 -0.8901 31 1 4.3050 5.0817 1.9980 32 1 5.1448 2.6034 -0.0108 33 1 6.0360 0.9985 -0.0008 34 1 6.1767 -1.6779 0.8890 35 1 6.1762 -1.6783 -0.8910 36 1 8.1205 -0.1399 -0.8926 37 1 8.1215 -0.1391 0.8873 38 1 8.5034 -2.5896 0.8874 39 1 8.5021 -2.5896 -0.8926 40 1 10.7047 -1.1420 2.4077 41 1 11.9921 -0.2942 1.5172 42 1 10.3348 0.3547 1.5182 43 1 11.3351 -3.6996 -0.8930 44 1 12.6231 -2.8522 -0.0040 45 1 11.3355 -3.6992 0.8869 46 1 10.3337 0.3553 -1.5241 47 1 11.9911 -0.2944 -1.5250 48 1 10.7029 -1.1411 -2.4144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_12496546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:15 Heat of formation + Delta-G solvation = -132.684642 kcal Electronic energy + Delta-G solvation = -25404.221429 eV Core-core repulsion = 21775.612587 eV Total energy + Delta-G solvation = -3628.608842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.167 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.68901 -39.93033 -39.20382 -37.18302 -36.58610 -33.76162 -32.38096 -31.81529 -29.54842 -28.64034 -28.43143 -28.42540 -27.03922 -26.21236 -24.73547 -22.76485 -22.28403 -21.17683 -19.50463 -18.41526 -18.11939 -17.27227 -16.90265 -16.55038 -16.50909 -16.24163 -16.02253 -15.87245 -15.27159 -15.20783 -14.71993 -14.56766 -14.21987 -14.12195 -14.07866 -13.91189 -13.73265 -13.62215 -13.39575 -13.31231 -13.20336 -13.09961 -13.07036 -13.05414 -12.55490 -12.43604 -12.35402 -12.13923 -12.09125 -11.80905 -11.68599 -10.90429 -10.80279 -10.79702 -10.55522 -10.37486 -10.21389 -9.89857 -9.26008 -0.23458 0.20270 1.07182 1.35400 1.42488 1.77286 1.83753 1.86615 1.88241 1.92186 2.23208 2.29474 2.63974 2.77318 3.35676 3.49248 3.62489 3.66652 3.96369 4.05299 4.06194 4.15134 4.20455 4.21500 4.30393 4.38082 4.51713 4.57758 4.66135 4.68796 4.69009 4.72726 4.74678 4.75706 4.76370 4.76809 4.81381 4.89344 5.02000 5.10531 5.18411 5.23340 5.35666 5.47723 5.50803 5.54797 5.55252 5.58913 6.30425 6.46501 6.63639 7.41958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.279 6.279 3 C 0.192 3.808 4 C -0.213 4.213 5 C -0.056 4.056 6 C -0.169 4.169 7 C -0.074 4.074 8 O -0.539 6.539 9 Si 0.946 3.054 10 H -0.251 1.251 11 H -0.252 1.252 12 H -0.250 1.250 13 C -0.018 4.018 14 C -0.173 4.173 15 C 0.559 3.441 16 O -0.517 6.517 17 N -0.732 5.732 18 C 0.121 3.879 19 C -0.121 4.121 20 C -0.411 4.411 21 Si 1.011 2.989 22 C -0.451 4.451 23 C -0.452 4.452 24 C -0.451 4.451 25 H 0.058 0.942 26 H 0.105 0.895 27 H 0.058 0.942 28 H 0.140 0.860 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.377 0.623 32 H 0.138 0.862 33 H 0.398 0.602 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 3.171 0.083 3.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.189 6.189 3 C 0.143 3.857 4 C -0.232 4.232 5 C -0.074 4.074 6 C -0.170 4.170 7 C -0.185 4.185 8 O -0.344 6.344 9 Si 0.769 3.231 10 H -0.175 1.175 11 H -0.176 1.176 12 H -0.174 1.174 13 C -0.036 4.036 14 C -0.177 4.177 15 C 0.346 3.654 16 O -0.393 6.393 17 N -0.386 5.386 18 C -0.002 4.002 19 C -0.159 4.159 20 C -0.497 4.497 21 Si 1.207 2.793 22 C -0.558 4.558 23 C -0.560 4.560 24 C -0.558 4.558 25 H 0.077 0.923 26 H 0.123 0.877 27 H 0.077 0.923 28 H 0.158 0.842 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.224 0.776 32 H 0.156 0.844 33 H 0.233 0.767 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.426 2.856 -0.367 2.911 hybrid contribution -0.259 0.120 0.346 0.449 sum -0.685 2.976 -0.021 3.054 Atomic orbital electron populations 1.23232 0.78249 1.04746 1.01407 1.86387 1.21144 1.25189 1.86191 1.19097 0.90994 0.85015 0.90589 1.21206 1.00686 0.91584 1.09729 1.21013 0.93937 0.97521 0.94950 1.20097 0.93386 0.96192 1.07337 1.24884 1.02741 0.98890 0.91996 1.86509 1.37171 1.95368 1.15360 0.85728 0.77281 0.78345 0.81723 1.17472 1.17607 1.17422 1.20971 0.99985 0.89712 0.92981 1.19382 0.90880 0.94022 1.13446 1.17947 0.81938 0.88613 0.76879 1.90845 1.71573 1.28631 1.48256 1.45963 1.05957 1.10141 1.76517 1.21484 0.89715 0.86466 1.02561 1.21425 0.93286 0.98410 1.02783 1.26141 1.17818 1.00474 1.05233 0.79173 0.66094 0.66937 0.67051 1.26166 1.05100 1.09134 1.15436 1.26145 1.09389 1.16004 1.04422 1.26166 1.05093 1.09132 1.15440 0.92340 0.87654 0.92345 0.84242 0.85526 0.86283 0.77551 0.84445 0.76653 0.91428 0.91436 0.91070 0.91036 0.90275 0.90278 0.91300 0.91352 0.91271 0.91294 0.91308 0.91282 0.91281 0.91350 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.28 -1.13 8.57 -40.54 -0.35 -1.48 16 3 C 0.19 0.55 6.70 -38.69 -0.26 0.29 16 4 C -0.21 -0.08 9.03 -39.47 -0.36 -0.44 16 5 C -0.06 0.03 8.65 -39.54 -0.34 -0.32 16 6 C -0.17 0.10 5.38 -104.67 -0.56 -0.46 16 7 C -0.07 0.13 2.81 36.01 0.10 0.23 16 8 O -0.54 0.66 12.77 -35.23 -0.45 0.21 16 9 Si 0.95 -1.57 25.05 -169.99 -4.26 -5.83 16 10 H -0.25 0.36 7.11 56.52 0.40 0.77 16 11 H -0.25 0.01 7.11 56.52 0.40 0.41 16 12 H -0.25 0.27 7.11 56.52 0.40 0.68 16 13 C -0.02 0.00 9.09 -39.20 -0.36 -0.36 16 14 C -0.17 -0.46 5.89 -104.84 -0.62 -1.07 16 15 C 0.56 2.41 7.76 -12.47 -0.10 2.31 16 16 O -0.52 -4.29 15.16 -16.58 -0.25 -4.54 16 17 N -0.73 -0.75 5.51 -61.35 -0.34 -1.09 16 18 C 0.12 0.09 5.67 -4.05 -0.02 0.07 16 19 C -0.12 0.23 4.70 -26.73 -0.13 0.10 16 20 C -0.41 0.88 4.45 37.16 0.17 1.05 16 21 Si 1.01 -3.08 12.19 -169.99 -2.07 -5.16 16 22 C -0.45 0.82 8.65 101.05 0.87 1.70 16 23 C -0.45 0.65 8.65 101.05 0.87 1.52 16 24 C -0.45 0.84 8.65 101.05 0.87 1.71 16 25 H 0.06 -0.11 7.66 -51.93 -0.40 -0.50 16 26 H 0.11 -0.14 8.14 -51.93 -0.42 -0.56 16 27 H 0.06 -0.11 7.66 -51.92 -0.40 -0.51 16 28 H 0.14 -0.25 6.30 -52.49 -0.33 -0.58 16 29 H 0.13 -0.26 4.85 -52.48 -0.25 -0.52 16 30 H 0.12 -0.33 7.96 -51.93 -0.41 -0.74 16 31 H 0.38 -1.55 8.70 45.56 0.40 -1.15 16 32 H 0.14 -0.29 6.40 -52.49 -0.34 -0.63 16 33 H 0.40 -0.70 6.50 -40.82 -0.27 -0.96 16 34 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.07 0.13 8.14 -51.92 -0.42 -0.30 16 36 H 0.07 -0.19 7.79 -51.93 -0.40 -0.60 16 37 H 0.07 -0.19 7.79 -51.93 -0.40 -0.60 16 38 H 0.08 -0.15 7.96 -51.93 -0.41 -0.57 16 39 H 0.08 -0.15 7.96 -51.93 -0.41 -0.57 16 40 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 41 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 42 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 43 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 44 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 45 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 46 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 47 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 48 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 LS Contribution 389.79 15.07 5.87 5.87 Total: 0.00 -8.46 389.79 -8.11 -16.57 By element: Atomic # 1 Polarization: -4.48 SS G_CDS: -7.40 Total: -11.88 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 1.14 Total: 7.33 kcal Atomic # 7 Polarization: -0.75 SS G_CDS: -0.34 Total: -1.09 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -1.05 Total: -5.82 kcal Atomic # 14 Polarization: -4.66 SS G_CDS: -6.33 Total: -10.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -8.46 -8.11 -16.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_12496546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.115 kcal (2) G-P(sol) polarization free energy of solvation -8.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds