Wall clock time and date at job start Tue Mar 9 2021 13:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35654 * 116.99934 * 2 1 4 4 C 1.38668 * 120.15331 * 0.02562 * 3 2 1 5 5 C 1.38098 * 120.08451 * 179.97438 * 4 3 2 6 6 C 1.38495 * 120.39172 * 0.04196 * 5 4 3 7 7 C 1.50706 * 119.85200 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.46938 * 119.99654 * 7 6 5 9 9 Si 1.86299 * 109.46748 * 359.97438 * 7 6 5 10 10 H 1.48503 * 109.47188 * 60.00070 * 9 7 6 11 11 H 1.48506 * 109.47139 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47505 * 299.99883 * 9 7 6 13 13 C 1.37827 * 120.30157 * 0.23118 * 6 5 4 14 14 C 1.39667 * 119.90811 * 359.47663 * 13 6 5 15 15 C 1.47534 * 120.19738 * 180.27484 * 14 13 6 16 16 O 1.21587 * 120.00415 * 180.27089 * 15 14 13 17 17 N 1.34785 * 119.99818 * 0.27057 * 15 14 13 18 18 C 1.46493 * 120.00051 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47174 * 179.97438 * 18 17 15 20 20 C 1.53005 * 109.47414 * 180.02562 * 19 18 17 21 21 Si 1.86298 * 109.47218 * 180.02562 * 20 19 18 22 22 C 1.86302 * 109.47310 * 60.00011 * 21 20 19 23 23 C 1.86298 * 109.46973 * 179.97438 * 21 20 19 24 24 C 1.86300 * 109.47030 * 300.00001 * 21 20 19 25 25 H 1.09001 * 109.47447 * 59.99706 * 1 2 3 26 26 H 1.08994 * 109.47532 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47056 * 299.99843 * 1 2 3 28 28 H 1.07998 * 119.95555 * 359.96820 * 4 3 2 29 29 H 1.08005 * 119.79800 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47161 * 239.99920 * 7 6 5 31 31 H 0.96698 * 114.00355 * 299.99977 * 8 7 6 32 32 H 1.08001 * 120.04781 * 179.74442 * 13 6 5 33 33 H 0.96993 * 119.99788 * 0.02562 * 17 15 14 34 34 H 1.08996 * 109.47454 * 300.00166 * 18 17 15 35 35 H 1.09008 * 109.47113 * 60.00381 * 18 17 15 36 36 H 1.08995 * 109.47731 * 300.00238 * 19 18 17 37 37 H 1.09000 * 109.47156 * 60.00354 * 19 18 17 38 38 H 1.09004 * 109.47023 * 300.00147 * 20 19 18 39 39 H 1.09000 * 109.46826 * 59.99960 * 20 19 18 40 40 H 1.08996 * 109.46886 * 59.99971 * 22 21 20 41 41 H 1.08999 * 109.47034 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.46762 * 300.00375 * 22 21 20 43 43 H 1.09000 * 109.47405 * 60.00019 * 23 21 20 44 44 H 1.08999 * 109.47075 * 179.97438 * 23 21 20 45 45 H 1.08996 * 109.47314 * 300.00085 * 23 21 20 46 46 H 1.08998 * 109.47388 * 60.00297 * 24 21 20 47 47 H 1.08999 * 109.47204 * 180.02562 * 24 21 20 48 48 H 1.09000 * 109.47027 * 299.99784 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2927 2.3737 0.0005 5 6 1.9211 3.6034 0.0011 6 6 3.3037 3.6837 0.0002 7 6 3.9768 5.0321 0.0002 8 8 4.7929 5.1570 1.1665 9 14 2.6826 6.3721 0.0007 10 1 1.8354 6.2417 1.2134 11 1 3.3458 7.7008 0.0013 12 1 1.8348 6.2421 -1.2116 13 6 4.0669 2.5360 -0.0060 14 6 3.4445 1.2857 -0.0004 15 6 4.2553 0.0532 -0.0009 16 8 3.7098 -1.0334 -0.0010 17 7 5.6009 0.1317 -0.0012 18 6 6.4060 -1.0922 -0.0011 19 6 7.8913 -0.7254 -0.0022 20 6 8.7323 -2.0036 -0.0028 21 14 10.5410 -1.5571 -0.0033 22 6 10.9339 -0.5559 1.5178 23 6 11.5649 -3.1134 -0.0032 24 6 10.9328 -0.5553 -1.5244 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.2140 2.3192 0.0004 29 1 1.3307 4.5078 0.0019 30 1 4.5983 5.1279 -0.8901 31 1 4.3050 5.0817 1.9980 32 1 5.1448 2.6034 -0.0108 33 1 6.0360 0.9985 -0.0008 34 1 6.1767 -1.6779 0.8890 35 1 6.1762 -1.6783 -0.8910 36 1 8.1205 -0.1399 -0.8926 37 1 8.1215 -0.1391 0.8873 38 1 8.5034 -2.5896 0.8874 39 1 8.5021 -2.5896 -0.8926 40 1 10.7047 -1.1420 2.4077 41 1 11.9921 -0.2942 1.5172 42 1 10.3348 0.3547 1.5182 43 1 11.3351 -3.6996 -0.8930 44 1 12.6231 -2.8522 -0.0040 45 1 11.3355 -3.6992 0.8869 46 1 10.3337 0.3553 -1.5241 47 1 11.9911 -0.2944 -1.5250 48 1 10.7029 -1.1411 -2.4144 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_9704008_12496546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:07:14 Heat of formation + Delta-G solvation = -128.906105 kcal Electronic energy + Delta-G solvation = -25404.057580 eV Core-core repulsion = 21775.612587 eV Total energy + Delta-G solvation = -3628.444992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.167 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.77214 -40.12921 -39.19793 -37.10357 -36.72193 -33.83557 -32.37722 -31.79417 -29.40173 -28.59567 -28.28225 -28.24550 -27.07029 -26.13607 -24.76918 -22.70713 -22.31148 -21.29837 -19.53968 -18.36256 -18.19458 -17.30372 -16.98504 -16.64428 -16.57105 -16.13760 -15.94888 -15.85680 -15.38481 -15.12737 -14.71282 -14.57392 -14.12287 -14.03981 -13.99080 -13.75454 -13.66977 -13.55939 -13.30510 -13.27930 -13.13104 -12.99821 -12.96907 -12.94259 -12.49046 -12.41133 -12.23022 -12.07479 -12.03347 -11.68662 -11.60109 -11.09791 -10.67197 -10.62597 -10.41860 -10.33043 -10.31351 -10.03259 -9.29777 -0.29199 0.20258 1.22250 1.50005 1.54897 1.76427 1.94145 1.96710 2.04850 2.10073 2.20656 2.26201 2.67275 2.79314 3.49784 3.53941 3.68382 3.75913 3.96608 4.10873 4.13957 4.18923 4.27622 4.32032 4.38397 4.42131 4.64267 4.67847 4.71416 4.72302 4.79634 4.84774 4.84908 4.90485 4.91216 4.91759 4.92995 4.93394 5.05772 5.11741 5.25026 5.28998 5.39289 5.54400 5.55477 5.63615 5.71142 5.72934 6.28004 6.53618 6.75534 7.22020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.169 3.831 4 C -0.213 4.213 5 C -0.056 4.056 6 C -0.166 4.166 7 C -0.069 4.069 8 O -0.550 6.550 9 Si 0.974 3.026 10 H -0.251 1.251 11 H -0.277 1.277 12 H -0.256 1.256 13 C -0.012 4.012 14 C -0.195 4.195 15 C 0.552 3.448 16 O -0.569 6.569 17 N -0.717 5.717 18 C 0.119 3.881 19 C -0.118 4.118 20 C -0.423 4.423 21 Si 1.089 2.911 22 C -0.466 4.466 23 C -0.473 4.473 24 C -0.466 4.466 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.145 0.855 30 H 0.131 0.869 31 H 0.389 0.611 32 H 0.158 0.842 33 H 0.413 0.587 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 4.899 0.103 4.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.120 3.880 4 C -0.232 4.232 5 C -0.074 4.074 6 C -0.167 4.167 7 C -0.180 4.180 8 O -0.357 6.357 9 Si 0.799 3.201 10 H -0.175 1.175 11 H -0.202 1.202 12 H -0.180 1.180 13 C -0.031 4.031 14 C -0.199 4.199 15 C 0.341 3.659 16 O -0.449 6.449 17 N -0.371 5.371 18 C -0.004 4.004 19 C -0.155 4.155 20 C -0.507 4.507 21 Si 1.280 2.720 22 C -0.572 4.572 23 C -0.578 4.578 24 C -0.572 4.572 25 H 0.091 0.909 26 H 0.126 0.874 27 H 0.091 0.909 28 H 0.177 0.823 29 H 0.162 0.838 30 H 0.149 0.851 31 H 0.238 0.762 32 H 0.175 0.825 33 H 0.251 0.749 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.111 4.601 -0.336 4.614 hybrid contribution -0.347 -0.382 0.350 0.624 sum -0.458 4.219 0.014 4.244 Atomic orbital electron populations 1.23439 0.76606 1.05473 1.02764 1.86339 1.23143 1.26420 1.86611 1.19419 0.91455 0.85441 0.91648 1.21419 1.01629 0.91004 1.09099 1.21287 0.94297 0.97836 0.93947 1.20285 0.93452 0.96537 1.06405 1.24897 1.02857 0.97756 0.92464 1.86486 1.37835 1.95279 1.16111 0.85331 0.76659 0.76810 0.81251 1.17512 1.20207 1.18012 1.21147 1.01020 0.88819 0.92072 1.19463 0.91052 0.94175 1.15237 1.18359 0.82835 0.88619 0.76118 1.90805 1.72649 1.30487 1.50983 1.45893 1.05126 1.11058 1.75016 1.21527 0.91502 0.86268 1.01111 1.21463 0.91004 0.98893 1.04174 1.26331 1.18880 1.00452 1.05065 0.77985 0.63944 0.64739 0.65382 1.26343 1.05087 1.09683 1.16088 1.26412 1.09866 1.17407 1.04164 1.26339 1.05087 1.09689 1.16065 0.90944 0.87388 0.90910 0.82348 0.83774 0.85094 0.76164 0.82472 0.74887 0.92969 0.92952 0.89606 0.89632 0.90530 0.90513 0.91578 0.91607 0.90758 0.91564 0.91536 0.91564 0.90735 0.91606 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -3.15 8.57 -68.78 -0.59 -3.74 16 3 C 0.17 1.14 6.70 22.85 0.15 1.29 16 4 C -0.21 -0.08 9.03 22.34 0.20 0.12 16 5 C -0.06 0.12 8.65 22.30 0.19 0.31 16 6 C -0.17 0.40 5.38 -19.90 -0.11 0.30 16 7 C -0.07 0.36 2.81 71.24 0.20 0.56 16 8 O -0.55 2.26 12.77 -148.98 -1.90 0.36 16 9 Si 0.97 -4.44 25.05 68.60 1.72 -2.72 16 10 H -0.25 1.13 7.11 99.48 0.71 1.84 16 11 H -0.28 0.10 7.11 99.48 0.71 0.80 16 12 H -0.26 0.92 7.11 99.48 0.71 1.62 16 13 C -0.01 0.01 9.09 22.52 0.20 0.21 16 14 C -0.20 -1.20 5.89 -20.01 -0.12 -1.32 16 15 C 0.55 5.73 7.76 86.69 0.67 6.41 16 16 O -0.57 -11.17 15.16 16.92 0.26 -10.91 16 17 N -0.72 -1.99 5.51 -466.28 -2.57 -4.55 16 18 C 0.12 0.32 5.67 86.38 0.49 0.81 16 19 C -0.12 0.49 4.70 30.59 0.14 0.64 16 20 C -0.42 1.83 4.45 71.98 0.32 2.15 16 21 Si 1.09 -7.17 12.19 68.60 0.84 -6.33 16 22 C -0.47 2.03 8.65 113.37 0.98 3.02 16 23 C -0.47 1.24 8.65 113.37 0.98 2.22 16 24 C -0.47 2.08 8.65 113.37 0.98 3.06 16 25 H 0.07 -0.24 7.66 -2.39 -0.02 -0.26 16 26 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.07 -0.25 7.66 -2.38 -0.02 -0.27 16 28 H 0.16 -0.70 6.30 -2.91 -0.02 -0.72 16 29 H 0.14 -0.87 4.85 -2.91 -0.01 -0.88 16 30 H 0.13 -0.98 7.96 -2.39 -0.02 -1.00 16 31 H 0.39 -3.79 8.70 -74.06 -0.64 -4.44 16 32 H 0.16 -0.89 6.40 -2.91 -0.02 -0.91 16 33 H 0.41 -1.66 6.50 -92.71 -0.60 -2.26 16 34 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.05 0.30 8.14 -2.38 -0.02 0.28 16 36 H 0.09 -0.58 7.79 -2.39 -0.02 -0.60 16 37 H 0.09 -0.57 7.79 -2.39 -0.02 -0.59 16 38 H 0.08 -0.27 7.96 -2.38 -0.02 -0.29 16 39 H 0.08 -0.28 7.96 -2.39 -0.02 -0.29 16 40 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 41 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 42 H 0.07 -0.39 7.79 -2.39 -0.02 -0.41 16 43 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 44 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 45 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 46 H 0.07 -0.40 7.79 -2.39 -0.02 -0.42 16 47 H 0.06 -0.24 7.96 -2.39 -0.02 -0.26 16 48 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 Total: 0.00 -21.81 389.79 4.63 -17.18 By element: Atomic # 1 Polarization: -10.63 SS G_CDS: 0.46 Total: -10.17 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 6.41 Total: 20.89 kcal Atomic # 7 Polarization: -1.99 SS G_CDS: -2.57 Total: -4.55 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -2.23 Total: -14.30 kcal Atomic # 14 Polarization: -11.61 SS G_CDS: 2.56 Total: -9.05 kcal Total: -21.81 4.63 -17.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_12496546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.727 kcal (2) G-P(sol) polarization free energy of solvation -21.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds