Wall clock time and date at job start Tue Mar 9 2021 13:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86299 * 109.47157 * 2 1 4 4 C 1.86295 * 109.47311 * 239.99344 * 2 1 3 5 5 C 1.86301 * 109.46795 * 119.99469 * 2 1 3 6 6 C 1.53001 * 109.47208 * 59.99999 * 5 2 1 7 7 C 1.52994 * 109.47536 * 179.97438 * 6 5 2 8 8 N 1.46498 * 109.47683 * 180.02562 * 7 6 5 9 9 C 1.34773 * 120.00428 * 180.02562 * 8 7 6 10 10 O 1.21586 * 120.00012 * 0.02562 * 9 8 7 11 11 C 1.47567 * 119.99971 * 180.02562 * 9 8 7 12 12 C 1.39420 * 120.12546 * 359.97438 * 11 9 8 13 13 C 1.39211 * 119.76105 * 180.02562 * 12 11 9 14 14 C 1.47815 * 120.00012 * 180.02562 * 13 12 11 15 15 C 1.35939 * 125.93068 * 180.02562 * 14 13 12 16 16 C 1.40969 * 106.74297 * 180.26472 * 15 14 13 17 17 C 1.34709 * 107.02575 * 359.60453 * 16 15 14 18 18 C 1.50701 * 125.66038 * 180.14532 * 17 16 15 19 19 O 1.42902 * 109.46986 * 300.26834 * 18 17 16 20 20 Si 1.86310 * 109.46997 * 180.27369 * 18 17 16 21 21 H 1.48500 * 109.47075 * 180.02562 * 20 18 17 22 22 H 1.48503 * 109.46957 * 299.99817 * 20 18 17 23 23 H 1.48497 * 109.47078 * 59.99968 * 20 18 17 24 24 O 1.34336 * 108.67250 * 0.39789 * 17 16 15 25 25 C 1.39801 * 119.99949 * 0.27959 * 13 12 11 26 26 C 1.37820 * 120.24113 * 359.44126 * 25 13 12 27 27 C 1.38776 * 120.24422 * 0.56059 * 26 25 13 28 28 O 1.35649 * 119.99832 * 179.69740 * 27 26 25 29 29 H 1.09003 * 109.47303 * 300.00924 * 1 2 3 30 30 H 1.09003 * 109.46476 * 60.00268 * 1 2 3 31 31 H 1.08998 * 109.47480 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46992 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46727 * 299.99278 * 3 2 1 34 34 H 1.08996 * 109.47518 * 59.99997 * 3 2 1 35 35 H 1.08998 * 109.47120 * 300.00553 * 4 2 1 36 36 H 1.09007 * 109.46826 * 60.00008 * 4 2 1 37 37 H 1.08997 * 109.47528 * 180.02562 * 4 2 1 38 38 H 1.08996 * 109.47518 * 299.99782 * 5 2 1 39 39 H 1.08998 * 109.47232 * 179.97438 * 5 2 1 40 40 H 1.09004 * 109.46907 * 59.99785 * 6 5 2 41 41 H 1.09004 * 109.46982 * 300.00247 * 6 5 2 42 42 H 1.09004 * 109.46860 * 60.00170 * 7 6 5 43 43 H 1.09004 * 109.47524 * 300.00329 * 7 6 5 44 44 H 0.97006 * 119.99753 * 0.02562 * 8 7 6 45 45 H 1.08003 * 120.11907 * 0.02562 * 12 11 9 46 46 H 1.08002 * 126.62506 * 359.97438 * 15 14 13 47 47 H 1.07992 * 126.48474 * 179.73642 * 16 15 14 48 48 H 1.08995 * 109.47799 * 60.27358 * 18 17 16 49 49 H 0.96707 * 113.99314 * 180.02562 * 19 18 17 50 50 H 1.08002 * 119.88127 * 179.70042 * 25 13 12 51 51 H 1.07996 * 119.87239 * 180.25415 * 26 25 13 52 52 H 0.96694 * 114.00016 * 270.01935 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8784 -1.5210 5 6 2.4839 -0.8781 1.5213 6 6 1.9739 -2.3206 1.5214 7 6 2.4843 -3.0420 2.7703 8 7 1.9965 -4.4234 2.7702 9 6 2.3220 -5.2532 3.7810 10 8 3.0203 -4.8552 4.6933 11 6 1.8310 -6.6448 3.7804 12 6 1.0298 -7.1037 2.7359 13 6 0.5703 -8.4178 2.7433 14 6 -0.2790 -8.9100 1.6382 15 6 -0.7921 -10.1637 1.5240 16 6 -1.5290 -10.1930 0.3226 17 6 -1.4374 -8.9662 -0.2264 18 6 -2.0750 -8.5334 -1.5214 19 8 -1.5865 -9.3484 -2.5887 20 14 -1.6506 -6.7506 -1.8571 21 1 -2.2794 -6.3238 -3.1329 22 1 -2.1582 -5.9036 -0.7480 23 1 -0.1763 -6.6033 -1.9578 24 8 -0.6786 -8.1945 0.5695 25 6 0.9079 -9.2703 3.7986 26 6 1.7047 -8.8184 4.8283 27 6 2.1682 -7.5104 4.8311 28 8 2.9471 -7.0691 5.8503 29 1 -0.3634 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 3.5740 1.7564 -0.0005 33 1 2.1208 2.2702 -0.8901 34 1 2.1208 2.2703 0.8899 35 1 2.1207 -1.9060 -1.5209 36 1 2.1207 -0.3646 -2.4110 37 1 3.5740 -0.8788 -1.5208 38 1 2.1207 -0.3642 2.4112 39 1 3.5739 -0.8785 1.5211 40 1 2.3373 -2.8345 0.6314 41 1 0.8839 -2.3206 1.5213 42 1 2.1212 -2.5282 3.6605 43 1 3.5743 -3.0420 2.7700 44 1 1.4390 -4.7408 2.0424 45 1 0.7665 -6.4421 1.9238 46 1 -0.6569 -10.9808 2.2171 47 1 -2.0671 -11.0382 -0.0802 48 1 -3.1571 -8.6415 -1.4476 49 1 -1.9551 -9.1251 -3.4544 50 1 0.5464 -10.2880 3.8048 51 1 1.9651 -9.4833 5.6385 52 1 2.4513 -6.6866 6.5871 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_13259648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:46 Heat of formation + Delta-G solvation = -118.364318 kcal Electronic energy + Delta-G solvation = -31759.299663 eV Core-core repulsion = 27427.951183 eV Total energy + Delta-G solvation = -4331.348480 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.166 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.69234 -41.45614 -39.64831 -38.11345 -37.79840 -36.63825 -34.28353 -33.76573 -32.78559 -32.17224 -30.13856 -29.58900 -28.48192 -28.47629 -27.13522 -26.37784 -24.91253 -23.50186 -22.82630 -22.53696 -21.59590 -21.04575 -19.61044 -18.94584 -18.81386 -17.73662 -17.30747 -17.09851 -16.83953 -16.50368 -16.29898 -16.25975 -16.01353 -15.50899 -15.23635 -14.78347 -14.77032 -14.52739 -14.32474 -14.27120 -14.16955 -14.10919 -13.98159 -13.94856 -13.64732 -13.44928 -13.39753 -13.22042 -13.16148 -13.14646 -13.13835 -13.06378 -12.76088 -12.62613 -12.26576 -12.08823 -11.88435 -11.80643 -11.03485 -10.91545 -10.85079 -10.81982 -10.68684 -10.51971 -10.37508 -10.30142 -9.99782 -8.87970 -0.54554 -0.20820 0.75280 0.93985 1.21476 1.39043 1.53253 1.65008 1.71310 1.81398 1.82867 1.83023 1.98632 2.16649 2.58485 2.66092 3.09595 3.17349 3.43778 3.54225 3.60314 3.80162 3.97818 3.98807 3.99351 4.07844 4.11804 4.22127 4.24716 4.38787 4.60255 4.62288 4.63178 4.64032 4.66855 4.69383 4.70591 4.71952 4.72271 4.74514 4.78448 4.85084 4.95767 5.02539 5.11042 5.12493 5.16955 5.28965 5.40951 5.42844 5.46290 5.48168 5.49613 5.50602 6.01653 6.35676 6.47964 6.68743 7.25280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.010 2.990 3 C -0.451 4.451 4 C -0.452 4.452 5 C -0.411 4.411 6 C -0.123 4.123 7 C 0.120 3.880 8 N -0.731 5.731 9 C 0.558 3.442 10 O -0.517 6.517 11 C -0.163 4.163 12 C -0.056 4.056 13 C -0.033 4.033 14 C 0.034 3.966 15 C -0.186 4.186 16 C -0.165 4.165 17 C -0.008 4.008 18 C -0.042 4.042 19 O -0.541 6.541 20 Si 0.944 3.056 21 H -0.246 1.246 22 H -0.244 1.244 23 H -0.243 1.243 24 O -0.171 6.171 25 C -0.053 4.053 26 C -0.148 4.148 27 C 0.179 3.821 28 O -0.475 6.475 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.398 0.602 45 H 0.134 0.866 46 H 0.156 0.844 47 H 0.156 0.844 48 H 0.096 0.904 49 H 0.389 0.611 50 H 0.141 0.859 51 H 0.146 0.854 52 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 -0.244 -2.930 6.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.206 2.794 3 C -0.559 4.559 4 C -0.559 4.559 5 C -0.496 4.496 6 C -0.161 4.161 7 C -0.003 4.003 8 N -0.384 5.384 9 C 0.345 3.655 10 O -0.393 6.393 11 C -0.167 4.167 12 C -0.074 4.074 13 C -0.033 4.033 14 C -0.015 4.015 15 C -0.205 4.205 16 C -0.184 4.184 17 C -0.057 4.057 18 C -0.152 4.152 19 O -0.349 6.349 20 Si 0.764 3.236 21 H -0.169 1.169 22 H -0.167 1.167 23 H -0.166 1.166 24 O -0.068 6.068 25 C -0.071 4.071 26 C -0.166 4.166 27 C 0.132 3.868 28 O -0.287 6.287 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.233 0.767 45 H 0.152 0.848 46 H 0.173 0.827 47 H 0.173 0.827 48 H 0.114 0.886 49 H 0.238 0.762 50 H 0.159 0.841 51 H 0.164 0.836 52 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -3.739 0.782 -2.319 4.469 hybrid contribution -1.094 -0.499 -0.464 1.289 sum -4.834 0.283 -2.782 5.585 Atomic orbital electron populations 1.26167 1.20921 1.04309 1.04441 0.79200 0.66957 0.66822 0.66442 1.26133 1.06295 1.19033 1.04425 1.26171 1.06322 1.07960 1.15432 1.26135 1.06232 1.01163 1.16095 1.21444 1.01306 0.95846 0.97474 1.21523 0.99679 0.80171 0.98926 1.46008 1.54237 1.12824 1.25343 1.17983 0.80448 0.84699 0.82364 1.90835 1.36603 1.76611 1.35300 1.20304 1.03247 0.94848 0.98307 1.21292 0.94433 0.94889 0.96830 1.17569 0.98990 0.93957 0.92770 1.20228 1.01607 0.90667 0.89010 1.21858 1.02036 0.96910 0.99710 1.21512 1.03534 0.97520 0.95813 1.21326 0.99107 0.91121 0.94186 1.23752 0.99136 1.07912 0.84394 1.86473 1.70593 1.59789 1.18007 0.85701 0.82583 0.73511 0.81797 1.16907 1.16727 1.16619 1.83875 1.53656 1.40290 1.29025 1.21122 0.95200 0.99571 0.91223 1.21395 0.98868 0.95784 1.00587 1.18595 0.88508 0.90933 0.88762 1.84749 1.33537 1.80946 1.29451 0.91246 0.91298 0.91366 0.91247 0.91280 0.91254 0.91363 0.91300 0.91231 0.90207 0.90191 0.91053 0.91060 0.91242 0.91231 0.76664 0.84833 0.82662 0.82674 0.88593 0.76230 0.84142 0.83613 0.74183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.92 8.65 101.05 0.87 1.79 16 2 Si 1.01 -3.18 12.19 -169.99 -2.07 -5.25 16 3 C -0.45 0.72 8.65 101.05 0.87 1.60 16 4 C -0.45 0.84 8.65 101.05 0.87 1.72 16 5 C -0.41 0.95 4.45 37.16 0.17 1.12 16 6 C -0.12 0.24 4.70 -26.73 -0.13 0.11 16 7 C 0.12 0.06 5.67 -4.05 -0.02 0.04 16 8 N -0.73 -0.66 5.50 -61.34 -0.34 -0.99 16 9 C 0.56 2.03 7.76 -12.46 -0.10 1.93 16 10 O -0.52 -3.63 15.14 -16.66 -0.25 -3.88 16 11 C -0.16 -0.36 5.88 -104.90 -0.62 -0.98 16 12 C -0.06 -0.05 9.20 -38.78 -0.36 -0.40 16 13 C -0.03 -0.03 5.87 -105.03 -0.62 -0.64 16 14 C 0.03 0.05 7.03 -36.49 -0.26 -0.20 16 15 C -0.19 -0.14 10.26 -39.37 -0.40 -0.54 16 16 C -0.16 -0.19 10.77 -39.80 -0.43 -0.62 16 17 C -0.01 -0.01 6.25 -35.56 -0.22 -0.23 16 18 C -0.04 0.05 2.98 36.01 0.11 0.16 16 19 O -0.54 0.50 12.84 -35.23 -0.45 0.05 16 20 Si 0.94 -1.15 27.38 -169.99 -4.65 -5.81 16 21 H -0.25 0.45 7.11 56.52 0.40 0.85 16 22 H -0.24 0.12 7.11 56.52 0.40 0.52 16 23 H -0.24 -0.17 7.11 56.52 0.40 0.23 16 24 O -0.17 -0.37 8.78 4.59 0.04 -0.33 16 25 C -0.05 0.03 9.54 -39.15 -0.37 -0.34 16 26 C -0.15 0.03 9.96 -39.54 -0.39 -0.37 16 27 C 0.18 0.35 6.72 -38.63 -0.26 0.09 16 28 O -0.48 -1.26 11.55 -40.60 -0.47 -1.73 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.15 7.79 -51.93 -0.40 -0.55 16 32 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 33 H 0.07 -0.10 7.96 -51.92 -0.41 -0.51 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.13 7.79 -51.93 -0.40 -0.54 16 36 H 0.07 -0.11 7.96 -51.92 -0.41 -0.52 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 38 H 0.08 -0.18 7.96 -51.93 -0.41 -0.59 16 39 H 0.08 -0.17 7.96 -51.93 -0.41 -0.58 16 40 H 0.07 -0.18 7.79 -51.93 -0.40 -0.59 16 41 H 0.07 -0.20 7.79 -51.93 -0.40 -0.61 16 42 H 0.07 0.09 8.14 -51.93 -0.42 -0.34 16 43 H 0.07 0.12 8.14 -51.93 -0.42 -0.31 16 44 H 0.40 -0.57 6.50 -40.82 -0.27 -0.84 16 45 H 0.13 -0.11 6.24 -52.48 -0.33 -0.44 16 46 H 0.16 -0.27 7.24 -52.49 -0.38 -0.65 16 47 H 0.16 -0.05 8.06 -52.49 -0.42 -0.47 16 48 H 0.10 -0.35 7.96 -51.93 -0.41 -0.76 16 49 H 0.39 -2.24 8.74 45.56 0.40 -1.84 16 50 H 0.14 -0.42 6.96 -52.49 -0.37 -0.78 16 51 H 0.15 -0.31 8.06 -52.49 -0.42 -0.73 16 52 H 0.40 -0.47 9.06 45.56 0.41 -0.06 16 LS Contribution 435.65 15.07 6.57 6.57 Total: 0.00 -10.20 435.65 -9.68 -19.88 By element: Atomic # 1 Polarization: -5.96 SS G_CDS: -6.77 Total: -12.73 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.28 Total: 4.23 kcal Atomic # 7 Polarization: -0.66 SS G_CDS: -0.34 Total: -0.99 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -1.13 Total: -5.89 kcal Atomic # 14 Polarization: -4.33 SS G_CDS: -6.73 Total: -11.06 kcal Total LS contribution 6.57 Total: 6.57 kcal Total: -10.20 -9.68 -19.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_13259648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.484 kcal (2) G-P(sol) polarization free energy of solvation -10.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds