Wall clock time and date at job start Tue Mar 9 2021 13:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86293 * 109.47378 * 2 1 4 4 C 1.86299 * 109.47082 * 239.99467 * 2 1 3 5 5 C 1.86310 * 109.46962 * 120.00094 * 2 1 3 6 6 C 1.52992 * 109.47226 * 59.99447 * 5 2 1 7 7 C 1.53001 * 109.47176 * 180.02562 * 6 5 2 8 8 N 1.46502 * 109.47056 * 180.02562 * 7 6 5 9 9 C 1.34779 * 119.99861 * 180.02562 * 8 7 6 10 10 O 1.21513 * 119.99871 * 359.97438 * 9 8 7 11 11 C 1.48162 * 119.99992 * 179.97438 * 9 8 7 12 12 C 1.39269 * 119.72302 * 180.02562 * 11 9 8 13 13 C 1.38635 * 119.06183 * 179.97438 * 12 11 9 14 14 C 1.38578 * 118.48649 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.32262 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47199 * 65.00172 * 15 14 13 17 17 Si 1.86300 * 109.47281 * 185.00338 * 15 14 13 18 18 H 1.48494 * 109.47393 * 59.99990 * 17 15 14 19 19 H 1.48497 * 109.47255 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46937 * 300.00166 * 17 15 14 21 21 C 1.38600 * 119.35549 * 0.02562 * 14 13 12 22 22 N 1.31495 * 120.89953 * 0.02562 * 21 14 13 23 23 H 1.09004 * 109.46811 * 300.00361 * 1 2 3 24 24 H 1.09003 * 109.47018 * 59.99799 * 1 2 3 25 25 H 1.08992 * 109.47320 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47179 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47210 * 300.00083 * 3 2 1 28 28 H 1.09004 * 109.47444 * 60.00026 * 3 2 1 29 29 H 1.09002 * 109.47387 * 300.00377 * 4 2 1 30 30 H 1.09003 * 109.46595 * 60.00475 * 4 2 1 31 31 H 1.09002 * 109.47279 * 180.02562 * 4 2 1 32 32 H 1.08999 * 109.46549 * 299.99597 * 5 2 1 33 33 H 1.08994 * 109.47113 * 180.02562 * 5 2 1 34 34 H 1.09004 * 109.47146 * 60.00089 * 6 5 2 35 35 H 1.08994 * 109.47553 * 300.00317 * 6 5 2 36 36 H 1.08996 * 109.46896 * 60.00575 * 7 6 5 37 37 H 1.09002 * 109.46917 * 300.00251 * 7 6 5 38 38 H 0.96998 * 119.99829 * 359.97438 * 8 7 6 39 39 H 1.08000 * 120.47045 * 0.25050 * 12 11 9 40 40 H 1.07998 * 120.75265 * 180.02562 * 13 12 11 41 41 H 1.09004 * 109.47386 * 305.00454 * 15 14 13 42 42 H 0.96696 * 114.00064 * 179.97438 * 16 15 14 43 43 H 1.07996 * 119.55392 * 179.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8784 -1.5210 5 6 2.4840 -0.8783 1.5212 6 6 1.9739 -2.3207 1.5213 7 6 2.4834 -3.0418 2.7708 8 7 1.9954 -4.4231 2.7706 9 6 2.3202 -5.2528 3.7819 10 8 3.0181 -4.8551 4.6936 11 6 1.8262 -6.6496 3.7819 12 6 2.1649 -7.5018 4.8301 13 6 1.6948 -8.8059 4.8165 14 6 0.9018 -9.2116 3.7550 15 6 0.3680 -10.6198 3.6987 16 8 -0.5383 -10.8293 4.7834 17 14 -0.5243 -10.8816 2.0844 18 1 0.4175 -10.6639 0.9572 19 1 -1.0509 -12.2690 2.0292 20 1 -1.6515 -9.9204 1.9803 21 6 0.6044 -8.3097 2.7455 22 7 1.0645 -7.0784 2.7829 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.5741 1.7563 -0.0005 27 1 2.1208 2.2702 -0.8900 28 1 2.1208 2.2703 0.8900 29 1 2.1206 -1.9060 -1.5210 30 1 2.1207 -0.3645 -2.4110 31 1 3.5740 -0.8788 -1.5208 32 1 2.1207 -0.3644 2.4111 33 1 3.5740 -0.8779 1.5215 34 1 2.3372 -2.8346 0.6313 35 1 0.8840 -2.3207 1.5212 36 1 2.1196 -2.5278 3.6605 37 1 3.5734 -3.0418 2.7713 38 1 1.4380 -4.7404 2.0429 39 1 2.7814 -7.1503 5.6443 40 1 1.9403 -9.4898 5.6155 41 1 1.1954 -11.3254 3.7751 42 1 -0.9219 -11.7166 4.8097 43 1 -0.0129 -8.6226 1.9165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_13287726.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:00 Heat of formation + Delta-G solvation = -87.920622 kcal Electronic energy + Delta-G solvation = -20947.751591 eV Core-core repulsion = 17729.877763 eV Total energy + Delta-G solvation = -3217.873828 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.76460 -40.10604 -37.94484 -36.74703 -34.20545 -33.21713 -32.92843 -29.57643 -28.44855 -28.43077 -28.28950 -26.42338 -24.99434 -23.53356 -22.49852 -21.59605 -19.12538 -18.75456 -18.15541 -16.92508 -16.79378 -16.70856 -16.17059 -15.79060 -15.68063 -15.20964 -14.72921 -14.49850 -14.38961 -14.21804 -14.16906 -14.04784 -13.97919 -13.88360 -13.43792 -13.40128 -13.13356 -13.11116 -13.09935 -12.59363 -12.55556 -12.24892 -12.13082 -11.83386 -11.31585 -11.01332 -10.85065 -10.80385 -10.77087 -10.55124 -10.46282 -10.23835 -9.95895 -0.51153 0.10993 0.94327 1.28433 1.35483 1.70897 1.75386 1.75450 1.85884 1.87482 2.15174 2.62700 2.72340 2.98390 3.21140 3.56270 3.70311 3.77495 3.91344 4.03977 4.10026 4.21916 4.24585 4.29617 4.56007 4.65558 4.67958 4.71448 4.73875 4.75092 4.75772 4.75947 4.78832 4.87598 4.99794 5.02640 5.15761 5.33237 5.39504 5.45313 5.51543 5.54524 5.54795 6.37072 6.40496 6.69167 7.22002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.012 2.988 3 C -0.452 4.452 4 C -0.451 4.451 5 C -0.411 4.411 6 C -0.121 4.121 7 C 0.117 3.883 8 N -0.712 5.712 9 C 0.571 3.429 10 O -0.530 6.530 11 C 0.079 3.921 12 C -0.108 4.108 13 C -0.050 4.050 14 C -0.106 4.106 15 C -0.081 4.081 16 O -0.543 6.543 17 Si 0.939 3.061 18 H -0.244 1.244 19 H -0.250 1.250 20 H -0.243 1.243 21 C 0.098 3.902 22 N -0.453 5.453 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.412 0.588 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.084 0.916 42 H 0.385 0.615 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.311 -2.971 -2.680 4.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.208 2.792 3 C -0.560 4.560 4 C -0.559 4.559 5 C -0.497 4.497 6 C -0.159 4.159 7 C -0.006 4.006 8 N -0.364 5.364 9 C 0.355 3.645 10 O -0.406 6.406 11 C -0.059 4.059 12 C -0.129 4.129 13 C -0.076 4.076 14 C -0.108 4.108 15 C -0.192 4.192 16 O -0.350 6.350 17 Si 0.760 3.240 18 H -0.168 1.168 19 H -0.173 1.173 20 H -0.166 1.166 21 C -0.061 4.061 22 N -0.164 5.164 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.248 0.752 39 H 0.171 0.829 40 H 0.166 0.834 41 H 0.102 0.898 42 H 0.233 0.767 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.253 -1.536 -3.339 3.883 hybrid contribution 0.012 -1.310 0.668 1.470 sum -1.241 -2.846 -2.671 4.095 Atomic orbital electron populations 1.26170 1.20943 1.04381 1.04377 0.79162 0.66935 0.66686 0.66403 1.26146 1.06260 1.19142 1.04405 1.26170 1.06236 1.08039 1.15417 1.26141 1.06166 1.01252 1.16112 1.21423 1.01435 0.95672 0.97376 1.21588 0.99661 0.80253 0.99135 1.45902 1.53060 1.12286 1.25121 1.17842 0.80217 0.84052 0.82355 1.90814 1.37741 1.76176 1.35877 1.21183 0.97197 0.95033 0.92449 1.22221 0.98589 0.93241 0.98800 1.21530 0.93525 0.95529 0.96986 1.20539 0.98122 0.95805 0.96310 1.24673 0.97337 0.95224 1.01996 1.86501 1.61817 1.37621 1.49012 0.85821 0.80936 0.81681 0.75517 1.16786 1.17343 1.16588 1.22587 0.97291 0.88409 0.97845 1.67522 1.08325 1.16371 1.24169 0.91301 0.91349 0.91270 0.91282 0.91302 0.91277 0.91273 0.91348 0.91303 0.90247 0.90248 0.90951 0.90953 0.91173 0.91176 0.75241 0.82885 0.83391 0.89850 0.76737 0.82484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.78 8.65 101.05 0.87 1.65 16 2 Si 1.01 -3.05 12.19 -169.99 -2.07 -5.13 16 3 C -0.45 0.66 8.65 101.05 0.87 1.54 16 4 C -0.45 0.80 8.65 101.05 0.87 1.67 16 5 C -0.41 0.91 4.45 37.15 0.17 1.07 16 6 C -0.12 0.21 4.70 -26.73 -0.13 0.08 16 7 C 0.12 0.08 5.67 -4.04 -0.02 0.06 16 8 N -0.71 -1.14 5.55 -61.15 -0.34 -1.48 16 9 C 0.57 2.32 7.81 -12.18 -0.10 2.22 16 10 O -0.53 -3.67 16.32 5.35 0.09 -3.58 16 11 C 0.08 0.24 6.75 -83.01 -0.56 -0.32 16 12 C -0.11 -0.20 9.63 -39.05 -0.38 -0.57 16 13 C -0.05 -0.02 9.83 -39.31 -0.39 -0.41 16 14 C -0.11 -0.04 5.40 -104.36 -0.56 -0.60 16 15 C -0.08 0.16 2.81 36.01 0.10 0.26 16 16 O -0.54 0.72 12.82 -35.23 -0.45 0.27 16 17 Si 0.94 -2.06 25.16 -169.99 -4.28 -6.34 16 18 H -0.24 0.40 7.11 56.52 0.40 0.80 16 19 H -0.25 0.50 7.11 56.52 0.40 0.90 16 20 H -0.24 0.21 7.04 56.52 0.40 0.61 16 21 C 0.10 0.10 9.84 -17.56 -0.17 -0.07 16 22 N -0.45 -1.07 9.54 -9.80 -0.09 -1.17 16 23 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 24 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 25 H 0.07 -0.12 7.79 -51.93 -0.40 -0.53 16 26 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 29 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 31 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 32 H 0.08 -0.17 7.96 -51.93 -0.41 -0.58 16 33 H 0.08 -0.17 7.96 -51.93 -0.41 -0.58 16 34 H 0.07 -0.17 7.79 -51.93 -0.40 -0.58 16 35 H 0.07 -0.17 7.79 -51.93 -0.40 -0.57 16 36 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 38 H 0.41 0.02 7.80 -40.82 -0.32 -0.30 16 39 H 0.15 0.19 7.64 -52.49 -0.40 -0.21 16 40 H 0.15 -0.24 8.06 -52.49 -0.42 -0.66 16 41 H 0.08 -0.33 7.96 -51.93 -0.41 -0.74 16 42 H 0.38 -2.19 8.74 45.56 0.40 -1.79 16 43 H 0.16 -0.14 4.88 -52.49 -0.26 -0.40 16 LS Contribution 359.90 15.07 5.42 5.42 Total: 0.00 -7.26 359.90 -7.53 -14.79 By element: Atomic # 1 Polarization: -2.97 SS G_CDS: -6.40 Total: -9.37 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 0.59 Total: 6.58 kcal Atomic # 7 Polarization: -2.22 SS G_CDS: -0.43 Total: -2.65 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: -0.36 Total: -3.31 kcal Atomic # 14 Polarization: -5.11 SS G_CDS: -6.35 Total: -11.46 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -7.26 -7.53 -14.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_13287726.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.129 kcal (2) G-P(sol) polarization free energy of solvation -7.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds