Wall clock time and date at job start Tue Mar 9 2021 13:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86299 * 109.46856 * 2 1 4 4 C 1.86294 * 109.47479 * 239.99620 * 2 1 3 5 5 C 1.86306 * 109.46829 * 119.99628 * 2 1 3 6 6 C 1.52996 * 109.47149 * 60.00258 * 5 2 1 7 7 C 1.52999 * 109.47372 * 179.97438 * 6 5 2 8 8 N 1.46495 * 109.47467 * 180.02562 * 7 6 5 9 9 C 1.34772 * 120.00287 * 180.02562 * 8 7 6 10 10 O 1.21557 * 120.00310 * 359.97438 * 9 8 7 11 11 C 1.47845 * 120.00218 * 179.97438 * 9 8 7 12 12 C 1.39986 * 120.55758 * 179.97438 * 11 9 8 13 13 C 1.38398 * 118.28423 * 180.02562 * 12 11 9 14 14 C 1.50705 * 120.34879 * 179.97438 * 13 12 11 15 15 O 1.42904 * 109.46435 * 65.00176 * 14 13 12 16 16 Si 1.86298 * 109.47238 * 185.00282 * 14 13 12 17 17 H 1.48488 * 109.47231 * 60.00270 * 16 14 13 18 18 H 1.48505 * 109.46766 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46970 * 299.99884 * 16 14 13 20 20 C 1.38311 * 119.30542 * 0.02562 * 13 12 11 21 21 N 1.31956 * 121.08154 * 359.97438 * 20 13 12 22 22 C 1.31664 * 121.87842 * 359.97438 * 21 20 13 23 23 H 1.08992 * 109.47329 * 299.99932 * 1 2 3 24 24 H 1.09007 * 109.46751 * 60.00514 * 1 2 3 25 25 H 1.09001 * 109.46783 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46690 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47202 * 299.99316 * 3 2 1 28 28 H 1.08996 * 109.47594 * 59.99920 * 3 2 1 29 29 H 1.09001 * 109.47537 * 300.00057 * 4 2 1 30 30 H 1.08998 * 109.47152 * 60.00334 * 4 2 1 31 31 H 1.08999 * 109.47372 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.47122 * 300.00141 * 5 2 1 33 33 H 1.08999 * 109.47020 * 180.02562 * 5 2 1 34 34 H 1.09004 * 109.47204 * 59.99933 * 6 5 2 35 35 H 1.09003 * 109.47456 * 299.99784 * 6 5 2 36 36 H 1.09004 * 109.46906 * 59.99879 * 7 6 5 37 37 H 1.09003 * 109.46759 * 300.00339 * 7 6 5 38 38 H 0.97004 * 119.99800 * 359.97438 * 8 7 6 39 39 H 1.07998 * 120.86134 * 0.02562 * 12 11 9 40 40 H 1.08995 * 109.47022 * 305.00400 * 14 13 12 41 41 H 0.96695 * 114.00323 * 60.00908 * 15 14 13 42 42 H 1.08000 * 119.45634 * 180.02562 * 20 13 12 43 43 H 1.08003 * 119.71519 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5210 5 6 2.4839 -0.8782 1.5213 6 6 1.9740 -2.3206 1.5213 7 6 2.4844 -3.0420 2.7703 8 7 1.9966 -4.4234 2.7700 9 6 2.3222 -5.2533 3.7808 10 8 3.0210 -4.8557 4.6925 11 6 1.8294 -6.6472 3.7808 12 6 2.1609 -7.5192 4.8245 13 6 1.6746 -8.8140 4.7767 14 6 2.0031 -9.7919 5.8754 15 8 1.4146 -9.3480 7.0996 16 14 1.3277 -11.4712 5.4346 17 1 1.9392 -11.9324 4.1625 18 1 1.6510 -12.4345 6.5176 19 1 -0.1460 -11.3851 5.2729 20 6 0.8847 -9.2015 3.7095 21 7 0.5884 -8.3575 2.7395 22 6 1.0261 -7.1158 2.7403 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.5740 1.7564 0.0005 27 1 2.1207 2.2703 -0.8900 28 1 2.1206 2.2703 0.8899 29 1 2.1208 -1.9060 -1.5210 30 1 2.1208 -0.3645 -2.4110 31 1 3.5741 -0.8787 -1.5207 32 1 2.1205 -0.3643 2.4112 33 1 3.5739 -0.8778 1.5215 34 1 2.3374 -2.8345 0.6313 35 1 0.8839 -2.3207 1.5213 36 1 2.1213 -2.5283 3.6605 37 1 3.5744 -3.0420 2.7699 38 1 1.4386 -4.7406 2.0427 39 1 2.7802 -7.1901 5.6458 40 1 3.0848 -9.8550 5.9941 41 1 0.4515 -9.2686 7.0670 42 1 0.5035 -10.2113 3.6700 43 1 0.7618 -6.4544 1.9285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_9704008_13287814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:23 Heat of formation + Delta-G solvation = -88.478286 kcal Electronic energy + Delta-G solvation = -21010.666926 eV Core-core repulsion = 17792.768916 eV Total energy + Delta-G solvation = -3217.898010 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.88560 -40.24428 -37.99574 -36.86481 -34.06368 -33.76868 -32.71327 -29.61055 -28.48510 -28.48455 -27.53966 -27.28165 -25.04930 -23.83889 -22.63341 -21.46506 -19.25679 -18.27216 -18.05013 -17.70775 -16.88705 -16.66048 -16.44456 -15.97630 -15.62572 -15.10888 -15.02898 -14.65122 -14.37047 -14.26792 -14.18316 -14.10373 -13.99282 -13.61979 -13.52785 -13.44158 -13.20019 -13.17038 -13.14957 -12.78715 -12.66837 -12.29877 -12.09518 -11.92869 -11.35433 -11.04507 -10.88458 -10.85790 -10.67407 -10.62843 -10.49705 -10.37764 -10.12497 -0.58753 -0.02999 0.97576 1.30434 1.38335 1.69053 1.73726 1.79139 1.80378 1.82234 2.05051 2.57281 2.63332 3.00082 3.28131 3.38518 3.58141 3.68281 3.72906 3.94632 3.97451 4.08532 4.18001 4.20830 4.46194 4.58083 4.61132 4.65882 4.68527 4.70097 4.71294 4.71374 4.72212 4.82174 4.86671 4.95261 5.06840 5.22127 5.28592 5.35555 5.44155 5.49341 5.49882 6.34102 6.39184 6.60598 7.08545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.452 4.452 2 Si 1.013 2.987 3 C -0.453 4.453 4 C -0.452 4.452 5 C -0.412 4.412 6 C -0.122 4.122 7 C 0.118 3.882 8 N -0.726 5.726 9 C 0.563 3.437 10 O -0.528 6.528 11 C -0.188 4.188 12 C 0.014 3.986 13 C -0.179 4.179 14 C -0.077 4.077 15 O -0.534 6.534 16 Si 0.944 3.056 17 H -0.245 1.245 18 H -0.246 1.246 19 H -0.247 1.247 20 C 0.119 3.881 21 N -0.478 5.478 22 C 0.139 3.861 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.154 0.846 40 H 0.124 0.876 41 H 0.378 0.622 42 H 0.157 0.843 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 0.152 -3.107 3.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.209 2.791 3 C -0.560 4.560 4 C -0.559 4.559 5 C -0.497 4.497 6 C -0.160 4.160 7 C -0.005 4.005 8 N -0.379 5.379 9 C 0.349 3.651 10 O -0.405 6.405 11 C -0.193 4.193 12 C -0.012 4.012 13 C -0.182 4.182 14 C -0.188 4.188 15 O -0.339 6.339 16 Si 0.765 3.235 17 H -0.169 1.169 18 H -0.169 1.169 19 H -0.170 1.170 20 C -0.037 4.037 21 N -0.185 5.185 22 C -0.020 4.020 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.235 0.765 39 H 0.172 0.828 40 H 0.142 0.858 41 H 0.225 0.775 42 H 0.174 0.826 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.566 -0.642 -3.151 3.577 hybrid contribution -0.108 0.666 0.172 0.696 sum -1.674 0.024 -2.979 3.417 Atomic orbital electron populations 1.26172 1.20937 1.04338 1.04430 0.79149 0.66898 0.66732 0.66324 1.26149 1.06281 1.19144 1.04434 1.26172 1.06265 1.07984 1.15459 1.26141 1.06219 1.01172 1.16179 1.21438 1.01383 0.95833 0.97319 1.21574 0.99741 0.79972 0.99171 1.45964 1.53911 1.12898 1.25084 1.18007 0.80264 0.84667 0.82194 1.90826 1.37381 1.76767 1.35536 1.21069 1.03816 0.95687 0.98703 1.21644 0.92894 0.90847 0.95850 1.21404 1.01063 0.96811 0.98879 1.24963 1.04059 1.04942 0.84866 1.86564 1.25623 1.90068 1.31638 0.85754 0.80757 0.75677 0.81278 1.16887 1.16936 1.17044 1.22925 0.92654 0.99207 0.88909 1.67724 1.21582 1.03334 1.25878 1.23042 0.90954 0.92301 0.95712 0.91283 0.91313 0.91320 0.91273 0.91275 0.91272 0.91320 0.91309 0.91287 0.90208 0.90209 0.90959 0.90952 0.91115 0.91122 0.76464 0.82819 0.85827 0.77504 0.82586 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.13 8.65 101.05 0.87 2.00 16 2 Si 1.01 -3.82 12.19 -169.99 -2.07 -5.89 16 3 C -0.45 0.90 8.65 101.05 0.87 1.77 16 4 C -0.45 1.13 8.65 101.05 0.87 2.00 16 5 C -0.41 1.28 4.45 37.16 0.17 1.45 16 6 C -0.12 0.38 4.70 -26.73 -0.13 0.26 16 7 C 0.12 -0.09 5.67 -4.04 -0.02 -0.11 16 8 N -0.73 0.62 5.51 -61.25 -0.34 0.28 16 9 C 0.56 1.22 7.78 -12.33 -0.10 1.12 16 10 O -0.53 -3.22 16.42 5.32 0.09 -3.13 16 11 C -0.19 -0.17 5.89 -104.82 -0.62 -0.79 16 12 C 0.01 0.02 9.38 -38.87 -0.36 -0.35 16 13 C -0.18 0.03 5.35 -104.53 -0.56 -0.53 16 14 C -0.08 0.11 2.82 36.01 0.10 0.21 16 15 O -0.53 0.22 12.84 -35.23 -0.45 -0.24 16 16 Si 0.94 -1.73 25.16 -169.99 -4.28 -6.00 16 17 H -0.25 0.32 7.11 56.52 0.40 0.72 16 18 H -0.25 0.07 7.11 56.52 0.40 0.47 16 19 H -0.25 0.46 7.05 56.52 0.40 0.86 16 20 C 0.12 0.02 9.84 -17.47 -0.17 -0.16 16 21 N -0.48 -0.56 10.35 -12.91 -0.13 -0.69 16 22 C 0.14 -0.05 10.71 -17.13 -0.18 -0.23 16 23 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 24 H 0.07 -0.14 7.96 -51.92 -0.41 -0.55 16 25 H 0.07 -0.19 7.79 -51.93 -0.40 -0.59 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.19 7.79 -51.93 -0.40 -0.59 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 32 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 33 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 34 H 0.07 -0.29 7.79 -51.93 -0.40 -0.69 16 35 H 0.07 -0.29 7.79 -51.93 -0.40 -0.69 16 36 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 37 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.40 -1.52 6.54 -40.82 -0.27 -1.78 16 39 H 0.15 0.24 7.74 -52.49 -0.41 -0.16 16 40 H 0.12 -0.26 7.96 -51.93 -0.41 -0.68 16 41 H 0.38 -1.39 8.70 45.56 0.40 -0.99 16 42 H 0.16 -0.25 4.87 -52.49 -0.26 -0.50 16 43 H 0.16 -0.59 6.42 -52.48 -0.34 -0.92 16 LS Contribution 357.63 15.07 5.39 5.39 Total: 0.00 -7.82 357.63 -7.32 -15.13 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: -6.27 Total: -11.49 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 0.75 Total: 6.64 kcal Atomic # 7 Polarization: 0.06 SS G_CDS: -0.47 Total: -0.41 kcal Atomic # 8 Polarization: -3.00 SS G_CDS: -0.37 Total: -3.37 kcal Atomic # 14 Polarization: -5.55 SS G_CDS: -6.35 Total: -11.90 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -7.82 -7.32 -15.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_9704008_13287814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.345 kcal (2) G-P(sol) polarization free energy of solvation -7.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds